Rroxscaffold_5G00386360

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000223
Physical Location & Seq
Forward (+)
65263778 .. 65265016
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386360.1

Sequence Viewer

Length: 516 bp
ATGGAAGGTTCTGAGTCTTCTGATGATTTCACTGACATTGTGATTTCTAGGTCCCTTGAAGATATTTTTAATGAAAATCTCTACAAGCACCAAGTTGGAAGCCCTGAATCATTTCAGTCCGACCTTCATCAATATTTTGCTTCTTACAAATATCCTTTATTGGAGGAAACTCGAGCTCAAGTGCAATGCAGGATGGAAACCATGTATCGAGCACCATTTGGTAAAGTGATTTTCAGTGATAACTTTCTCAAGTCATTCAGACAACTGACCTCGTTTCATACAAAGATGTCAATACTCATTTTGCTGCTTAAGCTTTCCAGTGGCTGGAGGTCTAAAAAACGTAATGTTGATATAGTTTGTAGAAGCTCTTCAATGATCGTGAAGAAATTCAAAATGGAAGGCCTATATATTGGTTGTTCAACTGATGTTGTAAAACATTTTAGATACACGCAAGTTTTAAAAATATCGGACATATTGCCTGATCTGTGCAGTATCCAATCACTGGTAAATCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

171

Amino Acids

19.88

Weight (kDa)

8.86

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 324, 502
AcsI RAATTY 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 324, 502
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 4 cut(s) 59, 372, 391, 420
AluBI AGCT 3 cut(s) 176, 313, 366
AluI AGCT 3 cut(s) 176, 313, 366
Alw21I GWGCWC 2 cut(s) 178, 214
AlwNI CAGNNNCTG 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 386
Asp700I GAANNNNTTC 3 cut(s) 111, 367, 386
AspS9I GGNCC 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 178
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 178, 214
BbvI GCAGC 1 cut(s) 291
BccI CCATC 1 cut(s) 187
BciVI GTATCC 1 cut(s) 503
BfaI CTAG 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 308
BfuI GTATCC 1 cut(s) 503
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 346
BpuEI CTTGAG 2 cut(s) 162, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 502
Bse1I ACTGG 2 cut(s) 318, 507
Bse3DI GCAATG 1 cut(s) 191
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 324, 502
BseMI GCAATG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 318, 507
BseXI GCAGC 1 cut(s) 291
BsgI GTGCAG 1 cut(s) 508
BshFI GGCC 1 cut(s) 402
BsiHKAI GWGCWC 2 cut(s) 178, 214
BsiHKCI CYCGRG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 324, 502
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 402
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 178, 214
Bsp143I GATC 2 cut(s) 375, 481
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 53
BspQI GCTCTTC 1 cut(s) 373
BspTI CTTAAG 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 191
BsrI ACTGG 2 cut(s) 318, 507
BssMI GATC 2 cut(s) 375, 481
Bst6I CTCTTC 1 cut(s) 373
BstAFI CTTAAG 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 198
BstKTI GATC 2 cut(s) 378, 484
BstMBI GATC 2 cut(s) 375, 481
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 9
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 1 cut(s) 402
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 4 cut(s) 30, 241, 325, 500
CaiI CAGNNNCTG 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 51
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 102, 176, 313, 324, 366, 402
CviKI_1 RGCY 6 cut(s) 102, 176, 313, 324, 366, 402
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 377, 483
DpnII GATC 2 cut(s) 375, 481
DraI TTTAAA 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 1 cut(s) 205
FaiI YATR 6 cut(s) 203, 279, 353, 406, 408, 473
FaqI GGGAC 1 cut(s) 37
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 346
HaeIII GGCC 1 cut(s) 402
Hin1II CATG 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 2 cut(s) 14, 107
Hpy188I TCNGA 5 cut(s) 13, 22, 121, 260, 469
Hpy188III TCNNGA 1 cut(s) 379
HpyAV CCTTC 2 cut(s) 134, 392
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 3 cut(s) 184, 189, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 2 cut(s) 375, 481
LguI GCTCTTC 1 cut(s) 373
LpnPI CCDG 6 cut(s) 117, 175, 310, 331, 488, 492
Lsp1109I GCAGC 1 cut(s) 291
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 340
MalI GATC 2 cut(s) 377, 483
MboI GATC 2 cut(s) 375, 481
MboII GAAGA 4 cut(s) 9, 71, 360, 394
MhlI GDGCHC 2 cut(s) 178, 214
MluCI AATT 1 cut(s) 386
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 2 cut(s) 76, 144
MnlI CCTC 3 cut(s) 157, 280, 321
MroXI GAANNNNTTC 3 cut(s) 111, 367, 386
MseI TTAA 3 cut(s) 69, 309, 458
MspCI CTTAAG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeII GATC 2 cut(s) 375, 481
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 171
PceI AGGCCT 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 373
PdmI GAANNNNTTC 3 cut(s) 111, 367, 386
PfeI GAWTC 1 cut(s) 107
PflMI CCANNNNNTGG 2 cut(s) 324, 502
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 51
PspPPI RGGWCCY 1 cut(s) 51
PspXI VCTCGAGB 1 cut(s) 171
PstNI CAGNNNCTG 1 cut(s) 324
SacI GAGCTC 1 cut(s) 178
SapI GCTCTTC 1 cut(s) 373
SaqAI TTAA 3 cut(s) 69, 309, 458
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 2 cut(s) 375, 481
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 2 cut(s) 178, 214
SetI ASST 9 cut(s) 10, 53, 126, 178, 272, 315, 332, 343, 368
Sfr274I CTCGAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 171
SmlI CTYRAG 4 cut(s) 171, 177, 248, 308
SmoI CTYRAG 4 cut(s) 171, 177, 248, 308
Sse9I AATT 1 cut(s) 386
SseBI AGGCCT 1 cut(s) 402
SspI AATATT 1 cut(s) 134
SspMI CTAG 1 cut(s) 48
SstI GAGCTC 1 cut(s) 178
StuI AGGCCT 1 cut(s) 402
TaiI ACGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 172, 208
TasI AATT 1 cut(s) 386
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 3 cut(s) 69, 309, 458
Tru9I TTAA 3 cut(s) 69, 309, 458
TscAI CASTG 4 cut(s) 37, 241, 325, 507
TseI GCWGC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 87, 116, 266
TspRI CASTG 4 cut(s) 37, 241, 325, 507
Van91I CCANNNNNTGG 2 cut(s) 324, 502
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 386
XhoI CTCGAG 1 cut(s) 171
XmnI GAANNNNTTC 3 cut(s) 111, 367, 386
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.