TPR and ankyrin repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UvrD-helicase | PF00580 | 105 - 194 | 1.8e-08 | UvrD/REP helicase N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 110 |
| AarI | CACCTGC | 2 cut(s) | 919, 2096 |
| Acc36I | ACCTGC | 2 cut(s) | 919, 2096 |
| AccI | GTMKAC | 2 cut(s) | 427, 4199 |
| AciI | CCGC | 5 cut(s) | 1668, 2048, 2912, 3808, 4273 |
| AclWI | GGATC | 3 cut(s) | 1368, 1917, 3164 |
| AcoI | YGGCCR | 2 cut(s) | 67, 1416 |
| AcuI | CTGAAG | 3 cut(s) | 1539, 2496, 4173 |
| AdeI | CACNNNGTG | 1 cut(s) | 1425 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 111, 2497, 2884, 3174, 3781, 3804 |
| AhlI | ACTAGT | 1 cut(s) | 2515 |
| AjnI | CCWGG | 8 cut(s) | 99, 584, 1628, 2496, 3280, 3391, 3495, 4018 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 257, 289, 626, 658, 2010, 2042 |
| AleI | CACNNNNGTG | 1 cut(s) | 4207 |
| Alw21I | GWGCWC | 2 cut(s) | 1894, 4106 |
| Alw26I | GTCTC | 5 cut(s) | 1751, 2246, 2347, 2755, 4234 |
| Alw44I | GTGCAC | 1 cut(s) | 1890 |
| AlwI | GGATC | 3 cut(s) | 1368, 1917, 3164 |
| Ama87I | CYCGRG | 1 cut(s) | 3173 |
| ApaLI | GTGCAC | 1 cut(s) | 1890 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3774 |
| AspS9I | GGNCC | 5 cut(s) | 156, 301, 1021, 1464, 2187 |
| AsuII | TTCGAA | 2 cut(s) | 1073, 1265 |
| AvaI | CYCGRG | 1 cut(s) | 3173 |
| AvaII | GGWCC | 1 cut(s) | 1464 |
| BaeGI | GKGCMC | 1 cut(s) | 1894 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 709, 742, 3498, 3525, 3531, 3558 |
| BalI | TGGCCA | 2 cut(s) | 69, 1418 |
| BanII | GRGCYC | 2 cut(s) | 2890, 4106 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 402, 434 |
| BauI | CACGAG | 2 cut(s) | 2555, 3671 |
| BbsI | GAAGAC | 3 cut(s) | 3413, 3659, 4161 |
| Bbv12I | GWGCWC | 2 cut(s) | 1894, 4106 |
| BciT130I | CCWGG | 8 cut(s) | 101, 586, 1630, 2498, 3282, 3393, 3497, 4020 |
| BciVI | GTATCC | 1 cut(s) | 1848 |
| BclI | TGATCA | 2 cut(s) | 454, 2451 |
| BcoDI | GTCTC | 5 cut(s) | 1751, 2246, 2347, 2755, 4234 |
| BcuI | ACTAGT | 1 cut(s) | 2515 |
| BfaI | CTAG | 9 cut(s) | 84, 398, 1685, 1839, 1880, 2516, 2570, 3270, 3303 |
| BfmI | CTRYAG | 6 cut(s) | 1251, 1566, 1707, 2814, 3525, 3552 |
| BfuAI | ACCTGC | 2 cut(s) | 919, 2096 |
| BfuI | GTATCC | 1 cut(s) | 1848 |
| BglII | AGATCT | 2 cut(s) | 490, 1436 |
| BlpI | GCTNAGC | 1 cut(s) | 269 |
| BmcAI | AGTACT | 2 cut(s) | 955, 3274 |
| Bme1390I | CCNGG | 8 cut(s) | 101, 586, 1630, 2498, 3282, 3393, 3497, 4020 |
| Bme18I | GGWCC | 1 cut(s) | 1464 |
| BmeT110I | CYCGRG | 1 cut(s) | 3173 |
| BmgT120I | GGNCC | 5 cut(s) | 156, 301, 1021, 1464, 2187 |
| BmiI | GGNNCC | 3 cut(s) | 158, 244, 605 |
| BmrFI | CCNGG | 8 cut(s) | 101, 586, 1630, 2498, 3282, 3393, 3497, 4020 |
| BpiI | GAAGAC | 3 cut(s) | 3413, 3659, 4161 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1733, 1765, 2872, 2904, 2935, 2967 |
| BpmI | CTGGAG | 3 cut(s) | 879, 3385, 4065 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 269 |
| Bpu14I | TTCGAA | 2 cut(s) | 1073, 1265 |
| BpuEI | CTTGAG | 4 cut(s) | 416, 1046, 2937, 3845 |
| Bsa29I | ATCGAT | 1 cut(s) | 4089 |
| BsaI | GGTCTC | 1 cut(s) | 2755 |
| BsaJI | CCNNGG | 6 cut(s) | 585, 1378, 2961, 3239, 3726, 3963 |
| BsaWI | WCCGGW | 2 cut(s) | 841, 1950 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1363, 1393 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 111, 2497, 2884, 3174, 3781, 3804 |
| Bse118I | RCCGGY | 1 cut(s) | 4190 |
| Bse1I | ACTGG | 3 cut(s) | 3291, 3368, 4001 |
| Bse3DI | GCAATG | 2 cut(s) | 2966, 3168 |
| BseBI | CCWGG | 8 cut(s) | 101, 586, 1630, 2498, 3282, 3393, 3497, 4020 |
| BseCI | ATCGAT | 1 cut(s) | 4089 |
| BseDI | CCNNGG | 6 cut(s) | 585, 1378, 2961, 3239, 3726, 3963 |
| BseGI | GGATG | 8 cut(s) | 1042, 1697, 1708, 2579, 3505, 3561, 3973, 4216 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 111, 2497, 2884, 3174, 3781, 3804 |
| BseMI | GCAATG | 2 cut(s) | 2966, 3168 |
| BseMII | CTCAG | 7 cut(s) | 185, 283, 2274, 2363, 2408, 2798, 3324 |
| BseNI | ACTGG | 3 cut(s) | 3291, 3368, 4001 |
| BseRI | GAGGAG | 5 cut(s) | 1271, 1379, 1857, 1860, 3826 |
| BseSI | GKGCMC | 1 cut(s) | 1894 |
| BseYI | CCCAGC | 1 cut(s) | 3748 |
| BsgI | GTGCAG | 1 cut(s) | 942 |
| BshVI | ATCGAT | 1 cut(s) | 4089 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1894, 4106 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3173 |
| BsiSI | CCGG | 3 cut(s) | 842, 1951, 4191 |
| BslFI | GGGAC | 1 cut(s) | 3617 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 111, 2497, 2884, 3174, 3781, 3804 |
| BsmAI | GTCTC | 5 cut(s) | 1751, 2246, 2347, 2755, 4234 |
| BsmFI | GGGAC | 1 cut(s) | 3617 |
| BsmI | GAATGC | 2 cut(s) | 2470, 3599 |
| Bso31I | GGTCTC | 1 cut(s) | 2755 |
| BsoBI | CYCGRG | 1 cut(s) | 3173 |
| Bsp119I | TTCGAA | 2 cut(s) | 1073, 1265 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1894, 2890, 4106 |
| Bsp1407I | TGTACA | 1 cut(s) | 1047 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 269 |
| Bsp19I | CCATGG | 1 cut(s) | 3239 |
| BspACI | CCGC | 5 cut(s) | 1668, 2048, 2912, 3808, 4273 |
| BspCNI | CTCAG | 7 cut(s) | 184, 282, 2275, 2362, 2409, 2797, 3325 |
| BspDI | ATCGAT | 1 cut(s) | 4089 |
| BspLI | GGNNCC | 3 cut(s) | 158, 244, 605 |
| BspMAI | CTGCAG | 1 cut(s) | 1711 |
| BspMI | ACCTGC | 2 cut(s) | 919, 2096 |
| BspPI | GGATC | 3 cut(s) | 1368, 1917, 3164 |
| BspQI | GCTCTTC | 1 cut(s) | 4094 |
| BspT104I | TTCGAA | 2 cut(s) | 1073, 1265 |
| BspTNI | GGTCTC | 1 cut(s) | 2755 |
| BsrDI | GCAATG | 2 cut(s) | 2966, 3168 |
| BsrFI | RCCGGY | 1 cut(s) | 4190 |
| BsrGI | TGTACA | 1 cut(s) | 1047 |
| BsrI | ACTGG | 3 cut(s) | 3291, 3368, 4001 |
| BssAI | RCCGGY | 1 cut(s) | 4190 |
| BssECI | CCNNGG | 6 cut(s) | 585, 1378, 2961, 3239, 3726, 3963 |
| BssSI | CACGAG | 2 cut(s) | 2555, 3671 |
| BssT1I | CCWWGG | 4 cut(s) | 2961, 3239, 3726, 3963 |
| Bst2BI | CACGAG | 2 cut(s) | 2555, 3671 |
| Bst2UI | CCWGG | 8 cut(s) | 101, 586, 1630, 2498, 3282, 3393, 3497, 4020 |
| Bst4CI | ACNGT | 3 cut(s) | 1252, 3738, 4160 |
| Bst6I | CTCTTC | 7 cut(s) | 955, 1515, 1802, 1976, 2690, 2936, 4094 |
| BstAUI | TGTACA | 1 cut(s) | 1047 |
| BstBI | TTCGAA | 2 cut(s) | 1073, 1265 |
| BstDSI | CCRYGG | 2 cut(s) | 1378, 3239 |
| BstEII | GGTNACC | 1 cut(s) | 3586 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 109 |
| BstF5I | GGATG | 8 cut(s) | 1042, 1697, 1708, 2579, 3505, 3561, 3973, 4216 |
| BstMAI | GTCTC | 5 cut(s) | 1751, 2246, 2347, 2755, 4234 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 1312, 1583, 1893, 2054, 2181, 2845, 4232, 4253 |
| BstNI | CCWGG | 8 cut(s) | 101, 586, 1630, 2498, 3282, 3393, 3497, 4020 |
| BstNSI | RCATGY | 5 cut(s) | 258, 992, 1310, 1817, 2360 |
| BstPI | GGTNACC | 1 cut(s) | 3586 |
| BstSCI | CCNGG | 8 cut(s) | 99, 584, 1628, 2496, 3280, 3391, 3495, 4018 |
| BstSFI | CTRYAG | 6 cut(s) | 1251, 1566, 1707, 2814, 3525, 3552 |
| BstSLI | GKGCMC | 1 cut(s) | 1894 |
| BstV2I | GAAGAC | 3 cut(s) | 3413, 3659, 4161 |
| BstX2I | RGATCY | 4 cut(s) | 490, 1373, 1436, 1922 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2738, 4123 |
| BstYI | RGATCY | 4 cut(s) | 490, 1373, 1436, 1922 |
| Bsu15I | ATCGAT | 1 cut(s) | 4089 |
| BsuI | GTATCC | 1 cut(s) | 1848 |
| BsuTUI | ATCGAT | 1 cut(s) | 4089 |
| BtgI | CCRYGG | 2 cut(s) | 1378, 3239 |
| BtgZI | GCGATG | 1 cut(s) | 63 |
| BtsCI | GGATG | 8 cut(s) | 1042, 1697, 1708, 2579, 3505, 3561, 3973, 4216 |
| BtsIMutI | CAGTG | 5 cut(s) | 1165, 2280, 2461, 3477, 3765 |
| BveI | ACCTGC | 2 cut(s) | 919, 2096 |
| Cfr10I | RCCGGY | 1 cut(s) | 4190 |
| Cfr13I | GGNCC | 5 cut(s) | 156, 301, 1021, 1464, 2187 |
| ClaI | ATCGAT | 1 cut(s) | 4089 |
| CseI | GACGC | 1 cut(s) | 3407 |
| CsiI | ACCWGGT | 3 cut(s) | 2496, 3391, 4018 |
| DraI | TTTAAA | 4 cut(s) | 807, 1432, 2628, 4110 |
| DraIII | CACNNNGTG | 1 cut(s) | 1425 |
| EaeI | YGGCCR | 2 cut(s) | 67, 1416 |
| Eam1104I | CTCTTC | 7 cut(s) | 955, 1515, 1802, 1976, 2690, 2936, 4094 |
| EarI | CTCTTC | 7 cut(s) | 955, 1515, 1802, 1976, 2690, 2936, 4094 |
| EciI | GGCGGA | 1 cut(s) | 3823 |
| Ecl136II | GAGCTC | 1 cut(s) | 4104 |
| Eco130I | CCWWGG | 4 cut(s) | 2961, 3239, 3726, 3963 |
| Eco147I | AGGCCT | 2 cut(s) | 104, 2950 |
| Eco24I | GRGCYC | 2 cut(s) | 2890, 4106 |
| Eco31I | GGTCTC | 1 cut(s) | 2755 |
| Eco32I | GATATC | 2 cut(s) | 2487, 4087 |
| Eco47I | GGWCC | 1 cut(s) | 1464 |
| Eco53kI | GAGCTC | 1 cut(s) | 4104 |
| Eco57I | CTGAAG | 3 cut(s) | 1539, 2496, 4173 |
| Eco88I | CYCGRG | 1 cut(s) | 3173 |
| Eco91I | GGTNACC | 1 cut(s) | 3586 |
| EcoICRI | GAGCTC | 1 cut(s) | 4104 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 109 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1021 |
| EcoO65I | GGTNACC | 1 cut(s) | 3586 |
| EcoRI | GAATTC | 2 cut(s) | 2111, 2857 |
| EcoRII | CCWGG | 8 cut(s) | 99, 584, 1628, 2496, 3280, 3391, 3495, 4018 |
| EcoRV | GATATC | 2 cut(s) | 2487, 4087 |
| EcoT14I | CCWWGG | 4 cut(s) | 2961, 3239, 3726, 3963 |
| EcoT22I | ATGCAT | 2 cut(s) | 55, 2133 |
| EcoT38I | GRGCYC | 2 cut(s) | 2890, 4106 |
| ErhI | CCWWGG | 4 cut(s) | 2961, 3239, 3726, 3963 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 257, 289, 3549, 3581 |
| FaqI | GGGAC | 1 cut(s) | 3617 |
| FauNDI | CATATG | 2 cut(s) | 525, 1500 |
| FbaI | TGATCA | 2 cut(s) | 454, 2451 |
| FblI | GTMKAC | 2 cut(s) | 427, 4199 |
| FokI | GGATG | 8 cut(s) | 1049, 1704, 1715, 2586, 3512, 3548, 3980, 4203 |
| FriOI | GRGCYC | 2 cut(s) | 2890, 4106 |
| FspBI | CTAG | 9 cut(s) | 84, 398, 1685, 1839, 1880, 2516, 2570, 3270, 3303 |
| GsaI | CCCAGC | 1 cut(s) | 3752 |
| GsuI | CTGGAG | 3 cut(s) | 879, 3385, 4065 |
| HapII | CCGG | 3 cut(s) | 842, 1951, 4191 |
| HgaI | GACGC | 1 cut(s) | 3407 |
| HincII | GTYRAC | 2 cut(s) | 428, 3943 |
| HindII | GTYRAC | 2 cut(s) | 428, 3943 |
| HindIII | AAGCTT | 2 cut(s) | 2837, 3209 |
| HpaII | CCGG | 3 cut(s) | 842, 1951, 4191 |
| Hpy99I | CGWCG | 1 cut(s) | 429 |
| HpyCH4III | ACNGT | 3 cut(s) | 1252, 3738, 4160 |
| HpyCH4IV | ACGT | 2 cut(s) | 424, 2676 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 1312, 1583, 1893, 2054, 2181, 2845, 4232, 4253 |
| HpySE526I | ACGT | 2 cut(s) | 424, 2676 |
| Ksp22I | TGATCA | 2 cut(s) | 454, 2451 |
| LguI | GCTCTTC | 1 cut(s) | 4094 |
| LmnI | GCTCC | 2 cut(s) | 844, 3415 |
| MabI | ACCWGGT | 3 cut(s) | 2496, 3391, 4018 |
| MaeI | CTAG | 9 cut(s) | 84, 398, 1685, 1839, 1880, 2516, 2570, 3270, 3303 |
| MaeII | ACGT | 2 cut(s) | 424, 2676 |
| MaeIII | GTNAC | 5 cut(s) | 23, 1213, 1442, 2980, 3586 |
| MfeI | CAATTG | 2 cut(s) | 579, 795 |
| MflI | RGATCY | 4 cut(s) | 490, 1373, 1436, 1922 |
| MhlI | GDGCHC | 3 cut(s) | 1894, 2890, 4106 |
| MlsI | TGGCCA | 2 cut(s) | 69, 1418 |
| MluNI | TGGCCA | 2 cut(s) | 69, 1418 |
| MlyI | GAGTC | 8 cut(s) | 210, 423, 511, 656, 706, 1121, 2504, 3221 |
| MmeI | TCCRAC | 4 cut(s) | 624, 2379, 3204, 4140 |
| Mox20I | TGGCCA | 2 cut(s) | 69, 1418 |
| Mph1103I | ATGCAT | 2 cut(s) | 55, 2133 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3774 |
| MscI | TGGCCA | 2 cut(s) | 69, 1418 |
| MslI | CAYNNNNRTG | 2 cut(s) | 4207, 4221 |
| Msp20I | TGGCCA | 2 cut(s) | 69, 1418 |
| MspA1I | CMGCKG | 2 cut(s) | 1670, 2780 |
| MspI | CCGG | 3 cut(s) | 842, 1951, 4191 |
| MspR9I | CCNGG | 8 cut(s) | 101, 586, 1630, 2498, 3282, 3393, 3497, 4020 |
| MssI | GTTTAAAC | 1 cut(s) | 2628 |
| MunI | CAATTG | 2 cut(s) | 579, 795 |
| Mva1269I | GAATGC | 2 cut(s) | 2470, 3599 |
| MvaI | CCWGG | 8 cut(s) | 101, 586, 1630, 2498, 3282, 3393, 3497, 4020 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 1312, 1583, 1893, 2054, 2181, 2845, 4232, 4253 |
| NcoI | CCATGG | 1 cut(s) | 3239 |
| NdeI | CATATG | 2 cut(s) | 525, 1500 |
| NlaIV | GGNNCC | 3 cut(s) | 158, 244, 605 |
| NmeAIII | GCCGAG | 2 cut(s) | 329, 4211 |
| NmuCI | GTSAC | 1 cut(s) | 1442 |
| NsiI | ATGCAT | 2 cut(s) | 55, 2133 |
| NspI | RCATGY | 5 cut(s) | 258, 992, 1310, 1817, 2360 |
| NspV | TTCGAA | 2 cut(s) | 1073, 1265 |
| OliI | CACNNNNGTG | 1 cut(s) | 4207 |
| PaeI | GCATGC | 2 cut(s) | 992, 1817 |
| PaqCI | CACCTGC | 2 cut(s) | 919, 2096 |
| PceI | AGGCCT | 2 cut(s) | 104, 2950 |
| PciSI | GCTCTTC | 1 cut(s) | 4094 |
| PctI | GAATGC | 2 cut(s) | 2470, 3599 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3774 |
| PfeI | GAWTC | 9 cut(s) | 854, 1325, 1580, 2402, 2665, 2864, 3035, 3094, 3868 |
| PleI | GAGTC | 8 cut(s) | 209, 423, 510, 655, 706, 1121, 2504, 3221 |
| PmeI | GTTTAAAC | 1 cut(s) | 2628 |
| PpsI | GAGTC | 8 cut(s) | 209, 423, 510, 655, 706, 1121, 2504, 3221 |
| PsiI | TTATAA | 1 cut(s) | 110 |
| Psp124BI | GAGCTC | 1 cut(s) | 4106 |
| Psp6I | CCWGG | 8 cut(s) | 99, 584, 1628, 2496, 3280, 3391, 3495, 4018 |
| PspEI | GGTNACC | 1 cut(s) | 3586 |
| PspFI | CCCAGC | 1 cut(s) | 3748 |
| PspGI | CCWGG | 8 cut(s) | 99, 584, 1628, 2496, 3280, 3391, 3495, 4018 |
| PspN4I | GGNNCC | 3 cut(s) | 158, 244, 605 |
| PspPI | GGNCC | 5 cut(s) | 156, 301, 1021, 1464, 2187 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1104, 1136 |
| PstI | CTGCAG | 1 cut(s) | 1711 |
| PsuI | RGATCY | 4 cut(s) | 490, 1373, 1436, 1922 |
| PvuII | CAGCTG | 1 cut(s) | 2780 |
| RseI | CAYNNNNRTG | 2 cut(s) | 4207, 4221 |
| SacI | GAGCTC | 1 cut(s) | 4106 |
| SalI | GTCGAC | 1 cut(s) | 426 |
| SapI | GCTCTTC | 1 cut(s) | 4094 |
| Sau96I | GGNCC | 5 cut(s) | 156, 301, 1021, 1464, 2187 |
| ScaI | AGTACT | 2 cut(s) | 955, 3274 |
| SchI | GAGTC | 8 cut(s) | 210, 423, 511, 656, 706, 1121, 2504, 3221 |
| ScrFI | CCNGG | 8 cut(s) | 101, 586, 1630, 2498, 3282, 3393, 3497, 4020 |
| SduI | GDGCHC | 3 cut(s) | 1894, 2890, 4106 |
| SexAI | ACCWGGT | 3 cut(s) | 2496, 3391, 4018 |
| SfcI | CTRYAG | 6 cut(s) | 1251, 1566, 1707, 2814, 3525, 3552 |
| SfuI | TTCGAA | 2 cut(s) | 1073, 1265 |
| SinI | GGWCC | 1 cut(s) | 1464 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 4207, 4221 |
| SmlI | CTYRAG | 4 cut(s) | 431, 1025, 2952, 3860 |
| SmoI | CTYRAG | 4 cut(s) | 431, 1025, 2952, 3860 |
| SpeI | ACTAGT | 1 cut(s) | 2515 |
| SphI | GCATGC | 2 cut(s) | 992, 1817 |
| SseBI | AGGCCT | 2 cut(s) | 104, 2950 |
| SsiI | CCGC | 5 cut(s) | 1668, 2048, 2912, 3808, 4273 |
| SspI | AATATT | 4 cut(s) | 888, 1557, 2533, 2792 |
| SspMI | CTAG | 9 cut(s) | 84, 398, 1685, 1839, 1880, 2516, 2570, 3270, 3303 |
| SstI | GAGCTC | 1 cut(s) | 4106 |
| StuI | AGGCCT | 2 cut(s) | 104, 2950 |
| StyD4I | CCNGG | 8 cut(s) | 99, 584, 1628, 2496, 3280, 3391, 3495, 4018 |
| StyI | CCWWGG | 4 cut(s) | 2961, 3239, 3726, 3963 |
| TaaI | ACNGT | 3 cut(s) | 1252, 3738, 4160 |
| TaiI | ACGT | 2 cut(s) | 427, 2679 |
| TatI | WGTACW | 8 cut(s) | 953, 1039, 1047, 2146, 3272, 3691, 3733, 4069 |
| TauI | GCSGC | 1 cut(s) | 1670 |
| TfiI | GAWTC | 9 cut(s) | 854, 1325, 1580, 2402, 2665, 2864, 3035, 3094, 3868 |
| TscAI | CASTG | 5 cut(s) | 1165, 2287, 2461, 3484, 3772 |
| TseFI | GTSAC | 1 cut(s) | 1442 |
| Tsp45I | GTSAC | 1 cut(s) | 1442 |
| TspGWI | ACGGA | 2 cut(s) | 713, 1984 |
| TspRI | CASTG | 5 cut(s) | 1165, 2287, 2461, 3484, 3772 |
| VneI | GTGCAC | 1 cut(s) | 1890 |
| VpaK11BI | GGWCC | 1 cut(s) | 1464 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 109 |
| XbaI | TCTAGA | 2 cut(s) | 83, 1879 |
| XceI | RCATGY | 5 cut(s) | 258, 992, 1310, 1817, 2360 |
| XmiI | GTMKAC | 2 cut(s) | 427, 4199 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3774 |
| XspI | CTAG | 9 cut(s) | 84, 398, 1685, 1839, 1880, 2516, 2570, 3270, 3303 |
| ZrmI | AGTACT | 2 cut(s) | 955, 3274 |
| Zsp2I | ATGCAT | 2 cut(s) | 55, 2133 |