RLG00000005699

TPR and ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
916953 .. 928086
11134 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005699

Sequence Viewer

Length: 8145 bp
ATGGAGGTTTCAGGCAAGAAAAAGATCAAGCCTGACCCTTTCACTGATACTGTGTTTTCTTGGTCCCTGGAGGACATTTTCAATGAGGATCTTTACAAAGACAAGGTGAAAAAGATTCCTGAATCATTTCAATCGGCTGAGCATTACTTTGGGTCTTATATATATCCTTTGCTGGAAGAAACCCGAGCAGAAGTGCATTCAAGTATGGAAATTCTTAATAGAGCACCATTTGCTGAAGTAGTGGGTTTTGAAGAAGCCAAGCCACATGGAACAAAGCTATATGATGTCAAGGTTGATTACTGGCGAAACAGGTTCAATGATAGTGGCAAGGAGCCATATAAAACTTTGCCCGGTGATCTTTTTGTTTTAGCTGATGCTAAACCTGAAACTGTTTTTGATTTACAAAGAGTAGGGAGGTCATGGGCTTTTGCATCAGCCACTGATGTCTCAGAAAGTGAGAATGAAGATGACAGTACCTCTCTTTATTTTAAAGTCAAGGCATCAAAAGAGTTTGAAGTTGAAAATAGCAGGACATCACTTTTTATAGTTTTCTTGGTGAATTTAATCCCTGAAAGAAGAATTTGGAAAACGTTGCACATGTCCAGAAATCTGAAGATTATCAACGAAGTTCTATGCCCTGAATCTATGGTTCAGAAAGATTTCTGCTCTGAAAGGAATAATGACATCTGGAATCAGAGTATAGTTGAGAGTTTATCATCTGGATTGAACGAATCCCAAACTGGGGCAGTGTTGGCCTGCCTTGAAATGCTGAATTCTGGTGAAAAGTCTGCCGTGGAACTTATCTGGGGTCCTCCTGGTACTGGAAAAACAAAAGCCACAGTTACTCTGCTTTCAACCCTGCTACAGATGAATTGTAGGACTCTTATTTGTGCTCCAACAAATGTTGCAATAACTGAAGTTGCTTCTCGTCTTGTGAAGATGGTGTGTAAAGCAGAGCCAAATGATTTGTTTTGTTCTTTAGGAGAGATTCTTCTATTTGGGAATAAGGAGCGACTGAAAATTGGTTCAGAGATTGAAGAAATTTATATGGACTACCGTGTCAAAAGGCTTGTAGATTGTTTGGGGCCAAGGACTGGTTGGAGGCATTGCTTTGCTTCCATGATAGGTTTACTTGAGGATTGTGTTTCTGTTTACCGTATTTTCTTGGAAAATGAGATCACAAAAGAGACAGAACAAATGAATGTCAGTGAAACGAAAGATAAAGAATGCAGAAGAGGTGCTCAAGTTAAAAAGGGGAAGTGCAAAACATTTGTTCAATTTTTGAGAGGTAGATTTACGTCTACTGCAGCGCCGTTAAGATATTGCATTTCTGTGTTCTGTACCCATGTAGGGAAAAATTATATTTCGGTCGACAATTTCCAAGACTTGGTTTCGCTTATCCGGTTAGTTGATTCCTTTGAGTTACTGTTGTCTCATGATAATGTTGATTCTGAAGCTTTGGAAGAACTCTTTTCTCATTCAGATGTTGAAGATGTGTCTGAGTCGTTTGTAGGTAACTCCTTTGATATTTGTATGATGAGAAGGGATTGCCTTTCAGCTTTACGCACTCTACGGGATTCTCTTAGTCAACTTAAACTTCCAAATATTGGGAATGAGGAATCTATACGGAAGTTCTGTTTTCAAAGAGCATCTTTAATATTTTGCACTGCATCTAGTTCGTATAAGCTGCATGGAGTGGCAATGGAACCACTAAGCATTGTTGTTATTGACGAGGCTGCACAGCTAAAAGAGTGTGAGTCAACAATACCCCTGCAACTTCGAGGTGTGAAGCATGCTGTTCTTGTTGGTGATGAATGTCAGTTACCAGCTACGGTAATAAGCAAGGTTTCTGATGAAGCTGGTTTTGCAAGAAGCTTGTTTGAGAGGTTGAGCTTAACGGGTCATTCTAAACATCTTTTAAATATGCAATACAGAATGCATCCATCAATAAGTTTATTCCCAAATTCAAATTTCTATTATAACTTGATCCTGGATGCTCCAAATGTAAAACGAAGAAGCTATGAGAAGCACTATCTTCCAGGAGCAATGTTTGGTCCTTATTCTTTTATAAATGTGATTGGTGGAAGAGAGGAGAAAGATGAGGATGGACATAGTCGGAAAAATATGGTGGAGGTTGCTATTGTTTCAAAAATACTGCGAAATCTGTACAAAGAATGGGTCAAATCAAAACAGAGACTCAGTATTGGTATAGTATCTCCCTATGCTGCTCAAGTAGTCGCAATTAAGGACAGAGTGGGTGAGAAGTATGATAGGCTTGATGGCTTTGTAGTGAAGGTAAAAACAGTTGATGGGTTCCAAGGTGGGGAAGAGGATATAATTATAATGTCCACTGTACGATCCAACAGCCATCAATCACTTGAATTCATTTCAAAATTGCAAAGAGTTAATGTCTCTATTACAAGGGCTAGGCACTGTTTGTGGATTTTGGGGAATGAAAGAACTCTTTCCGATAGTGAATCTGTTTGGAAGGCCTTGGTCCTTAATGCCAAAGGTCGTCAATGCTTCTTTAATGCCGATGAAGACAAGGATTTAGCCAAGGCCATATTAGAGGTAAAGAAAGAGTTTGACCAATTTGATGATTTGCTCAATGCCGACAGCGTACTTTTTAGAAGTGCTAGATGGAAGGTACTTTTCAGTGATAACTTTCTGAAGTCATTCAAGAAACTGACATCAGTCCGCTTGAAGAAGTCAGTGCTAAATCTTCTACTGAAGCTTTCCAGTGGTTGGAGACCTAAGAAGCGAAATGTTGAGACAATTTCCGGTAGTTCTTGCATGATCTTGAAGAAATTTAAGGTTGAAGGTCTATACATTGTTTGCACTAATGACATTGCAAAGAACCTGCAGTACGATCAAGTATTAAAGATCTGGGACATATTGCCTCTAGAGGATATCTCAAAGTTGATAAACCGCCTGGATAGTATTTTCAACAGATATACTGATAACTTTATTAATCTTTGCAAGGAGAAGTGTCTCGATGGTGATCTAGAGGTTCCAAAACGCTGGCCACCGTCTTTGGAATTTTCCCGGTTTAAGGATCTTAGCGTCAGTGAAGCTCAGAGTGATTTAGTTGGTGACACTTCTGATTGTAGAAGCTATGTTGAGAATTCACAGGTCAGCGAGAGTTTGTTGCTGATGAAATTTTATTCCTTATCATCTGGGGTAGTAAACCACTTGCTTTCAGACCGTGAGGGTAGAGAACTGGATCTTCCATTTGAAGTTACAGACGAAGAGATGGAGATTATCCTTTATCGTAGAAGTTCCTTTATAGTGGGACGGTCAGGAACTGGGAAAACCACTGTTTTAACCATGAAATTGTTTCAAAAAGAACAATGGCACCAATTTGCAGTTCAAGGATGCTATAGTAGTCAAAATACTAGCAAGGTTGAGCAGAGTGCTGCAGCTACTGAAGGGAAAGTTCTGCGCCAGCTTTTTGTGACAGTGAGTCCTAAGCTATGTTTTGCCATCAAGCGACATGTTTCACACTTGAAAAGTTTTGCATGCGGCAGAGGTAGCTCAACTGACTCAACTGAAAGAGGTTTAATTGATATGGCTGATTTTGATGAGGAGGAAACCCAATTCAAGGATATCCAAGATTCATTTCATGATATTCCTCCGAGTTCTTACCCGCTTGTCATTACATTCCATAAGTTTTTGATGATGCTTGATGGGACATTGAGTAACTCATACTTCGAAAGATTCCTTGATGTGACAGCTACTGTTGGCCATTTTAGGAGTTCGAGATCAGTCGCATTTCAGAGCTTGATAAGGACGAAAGAAGTTAATTATGTGAGGTTTAGCTCTTTGTATTGGCCCCGTTTTAATACTCAGATAACAAAGAAGCTTGACGTTTCAAGAGTCTTTATAGAGATTATTTCTTATATAAAAGGTGGCTTAGGAGCTATAGATGCATGTGATGGTAAACTCAGCCGGGAGGATTATGTTCAACTGTGTGAGGGCCGGGGTTCTAATTTGAGCAAGCAAAAGAGAGAAGCAATATACGATGTTTTTCAGGCTTATGAAAAGTTGAAGATGGAAAATGGTGAATTCGATCTGGCTGATTTTGTAATTGATCTTCACCGTCGACTCAAGCATGAAAAATATGAGGGTGATCAGATGGAATTTGTTTATATTGATGAGGTTCAAGATCTCACAATGAGTCAAATTGCTTTGTTTAAACACATGTGCAACAATGTTGAAGAGGGATTTGTCTTTTCTGGTGATACAGCACAAACAATAGCAAGGGGTATTGACTTTAGGTTTCAGGATATCAAAACTCTGTTCTACAAGAAGTTTGTATTGGAGTCAAGAAGCAATAACAACGATGAAAGAAAAGAAAAAGGCCTCGTCTCTGAATTACTTCAGTTGACTCAAAACTTCCGTACTCATGCTGGTATATTGAAGTTATCACAAAGCATTGTTGAACTACTGTATCGGTTTTTCCCCTTTTCTGTTGATGTTTTAAAACCTGAAACCAGTCTGATTTATGGGGAAGCTCCAGTTTTGCTTGAATCTGGGGAAAACGAAAATGCAATCATGAAAATTTTTGGAAACAGTGGAAATATAGTTGGCTTTGGTGCAGAGCAGGTGATTTTGGTGCGAGATGATAGTGCTCGACGAGAAATATCCAAATTTGTAGGGAAGCATGCTCTTGTCCTAACCATAGTGGAGTGTAAGGGCCTTGAGTTTCAGGATGTCCTCTTATACAACTTTTTCGGCACATCACCTTTGAAAAATCAGTGGAGGGTCATATATGATTACATGAAGGAACAAGATTTACTAGACTCCACATTACCTAAGCGCTTTCCAAGTTTCAGTGAATCAAAACACAACATATTGTGCTCTGAACTGAAGCAATTATATGTGGCTGTTACTCGAACAAGACAGAGATTGTGGATTTGTGAAAATGTGGAAGACCTCTCGAAACCTATGTTTGACTATTGGAAGAAAAAATGTCTTGTGCAACAAAGGCAGTTAGATGATTCACTTGCCCAGGCAATGCAAGTGGCAAGCAGTCCAGTGGAGTGGAAATCACGAGGCATTAAGCTATATCATGAACATAACTATGAAATGGCCACAATGTGCTTTGAAAGAGCTGGTGACACTTACTGGGAAAGGAGGTCTAAAGCTTCCGGCCTCAAAGCTATTGCTGACCGTATGCGAACATCAAATCCTGAAGAGGCTAAATCAATCCTTAGAGAAGCTGCTGAAATATTCGATGCTATTGGCAAGGCAGATTCTGCTGCGAGATGTTTTTCTGATTTGGGGGAGTATGAAAGAGCAGCTAGGATATATTTGGAAAAATGTGGAGACTCGGAACTTCAAAGAGCTGCAGAATGTTTTTCATTAGCGGGATGCTTTGAGGATGCTGCAGATGTCTATGCCAAGGGTAATTTTTTCGCTGAGTGTCTCACTGTTTGTGCAGAGGGGAAACTATTTGAAATGGGTTTGCAGTATATTAATTATTGGAAACAGCATGCTGTTGAGGACTGTGCTAAGGCTAGTAGAGGAGAAGGAATATATAAAATGGAGCAGGAATTTTTAGAGAGCTGCGCGCTTCACTATCATAAGTTGAAAGATAACAGATTAATGATGAAATTTGTGAAAGCTTTCAATTCTAAAATATTGATGCGGGACTTTTTGAAGAGTTTGGGGAGCCTTGATGAGCTTTTGTCATTGGAGGAAGAATTTGGAAATTATCTGGAAGCCGCAAACATCGCCCAGCTTAAAGGTGAAATCCTACTTGAATCTGATTACCTTGGAAAGGCAGGTAAGTTCAAAGAGGCCTCAATGCATATTCTGTTTTATGTAATTTCCAAGTCTCTTTGGTCATCTGGTAGCAAGGGCTGGCCCATGACAAAGTTTCCACAACAGGAGGAGCTTCTGACAAAGGCCAAGTCATTTGCCAAGAATGTGAAAGATAATGTTTATGAGCTGGTTTGCGCTGAGTCGGAGATTTTATTGAATGGGCAAGATAACTTGGCTGTTTTGAAACATCAAATGGATGCTTATGAAAGACTTGAGAGTATTAGAGGTGAAGTGTTATCAGCTCGAAAAATTTTGGACGCCCATCTGTCTCCAAGAACTGATAAGTATTTATGGGAGAAAGAATTAATTGGAGATCTTGTAATGCATTCAAAAGATAAAATATCTAGAAATCAGGTGTCCATTGATTCGCTTGTCTACTACTGGAATTTCTGGAAGGAGAAGATCCTTCACATTATTGAATCTGTAGGATGTGTGGAAACTCCAGAGTACAATAGTTATGTAGAACTCTGTTTTACTTGTTTAGGAGTTTGGAGGTTGTATCATAATCTGAATCCAATCTATGTTTTACTGGTCCCTGATGCTGATTGGGTTAGAGGTCTGGACAAAAGGCATTTGAAAAGTTATGGGAAGTTGGTCTCCATTGATGTTCATCAGCTCATTCCAGCAGCTCAGTATTATTGGAGTTCAGAACTGCTCTCTGTTGGCATCAAAGTTTTGGAAAAGCTTGAAGCACTTTTCAAGTTCCCACTAAAGAGTTCTGACTCGGCATTCTTCCAGTGCAGGGCTCTTACCCTTATCTTTGATGTTGCAAGAAATCTTTTGGATTCCAAATGTCTGAAGCCAAGGTATCATGATTACATGACACTACAGAATCTGGTAACATTTTCGACTGGGGAGTATGTTTCTTACATCTTTCCTTTAGATTGGAGGAATTCGTTGAGACAGAATATGATTTCTCTTAGAAGAACTGATGCTTCAAAGAATGTGCTGAATCAAGTTATAGTTGAATATACCAGCTCGAAGAACGAGCTGTCTTATGGGCAGCTTGGAAGGATTGCAATGATCATTCTCGGGTCAGGTATGCTGCTGAATACTGAGCTCGCTGTTCAGCTTGTCAAAAAGCTTGAAATTGGTACACCATGGAAAGCCTTCATTGAGAATCTCTGTGCGAGCGTTGGACCTGGACATACCCATCAGGAACCAATAGAGGTGTCTGTCATGTTGCGGTTACATGAGGCTTTGGTTGAAACTTACACTGTCAACTGGAGGAAGGTTTCCAACTACATATCACCTGGTTGCTTCTTGTATCTTGTGGAGCGCCTTCTGTTTTCGGCAAGTTGCTATCAAGGTTTTGTCATCACTACAAGTTCTTGCTTTATTGAATGGCTGATATACCAGGATGAAGATACCAGCTTACGTTCCATAGTGACTGGTGGGCGTCCTTCTCTGGGAAACATTCTTCCATTTGTGATTAATGTGGTTAGCGATTGTATTTTTAAGAAGAAGGATATGATTGAATGGATTGAGAAGTCTGACAGCAATTGGAGGAAGTATTATCAGTCACTCATGTTGCGGTTGGTTATTGTCTTGTGTTTGATTAATTTGAACTTCCGCTTGTGTTTGGATATAATCCATGATTTGCTGGGGAGGAACTTTGTCACTGAACTCCTACCATGGGAGTTTTATGATGCACTTAGGAGGAGGAGGAAACCCAATTCTCTCAATTTAAATGTGAATGTGCTTGCTGGAGCTCTCAAGAAGATTAATAATACATTGGTGATTGCGAGTTTCGGGGTTAATTGTTCAGGGTTTTACAGTTCGGATGCCATCTTTGTCGACATGACGACCAATCAATGCAAGGATGACATATTGAGAAAATGGTTTCCAAAGCCGCCTGTCATTCAAGTTGCACAACATCAAGTTGCATCTGTTGAAAAAGGTAGAAGTTCTTGCAGTCCTGCACTCTCTGCAACTGATTCTGAAGAAGGTAAGAGAACTGATTCTGAAGAAGGTAAGAGTTCTAAACTAGTGCCTTCAGAATCCAGCTTGGTAAAAGAGACTGTTGTTGCAGCTGGTAAGCAGTGTGAATCTGAAGACAGTCACAGTAAAGATGAGGGTAATTGCATATCCAATGCCTCAGATCAGCAGTGTCCAGGCCCAAGCTCGGAGCAGCATGACGCCGAGGACAGCCACACAAAAGGCGAGGAAAACAACGCATCCTCCTCCGAGTCAAATCCAACATGTCAAAAAGATGATGGTACTTCCACCCCATCTGGCAGTAAAGAGGCTGGAAACAAGGCGAAGAACAAGACAAAGGGCAAGAACAAGAAAAACAAGAAGAAAGGAGGCCGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2715

Amino Acids

309.12

Weight (kDa)

6.5

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 76 - 204 1.1e-64 Domain of unknown function (DUF6469)
AAA_11 PF13086 242 - 615 3.8e-36 AAA domain
AAA_12 PF13087 623 - 819 5.9e-55 AAA domain
UvrD-helicase PF00580 1330 - 1419 3.6e-08 UvrD/REP helicase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1980, 2069, 2342
AarI CACCTGC 1 cut(s) 4594
AasI GACNNNNNNGTC 1 cut(s) 1058
Acc36I ACCTGC 3 cut(s) 2868, 4594, 5777
AccB1I GGYRCC 1 cut(s) 3354
AccB7I CCANNNNNTGG 4 cut(s) 1094, 1387, 1607, 2745
AccI GTMKAC 5 cut(s) 1301, 1371, 4102, 6201, 7623
AccII CGCG 1 cut(s) 5573
AclI AACGTT 1 cut(s) 590
AclWI GGATC 6 cut(s) 96, 1981, 2352, 3063, 3231, 6223
AcoI YGGCCR 3 cut(s) 3023, 3742, 5091
AcyI GRCGYC 3 cut(s) 6084, 7225, 7965
AdeI CACNNNGTG 1 cut(s) 5100
AfeI AGCGCT 1 cut(s) 4820
AflIII ACRYGT 4 cut(s) 597, 3493, 4200, 8027
AhdI GACNNNNNGTC 1 cut(s) 3462
AhlI ACTAGT 1 cut(s) 7813
AjuI GAANNNNNNNTTGG 6 cut(s) 3351, 3383, 3603, 3635, 4301, 4333
AloI GAACNNNNNNTCC 2 cut(s) 5173, 5205
Alw21I GWGCWC 7 cut(s) 226, 895, 1243, 4633, 4862, 6888, 7540
AlwI GGATC 6 cut(s) 96, 1981, 2352, 3063, 3231, 6223
AlwNI CAGNNNCTG 6 cut(s) 440, 3305, 3425, 3737, 5258, 6661
Ama87I CYCGRG 2 cut(s) 183, 6857
Aor51HI AGCGCT 1 cut(s) 4820
ArsI GACNNNNNNTTYG 4 cut(s) 2163, 2195, 5900, 5932
AseI ATTAAT 7 cut(s) 2970, 5478, 5606, 6131, 7260, 7386, 7551
Asp700I GAANNNNTTC 8 cut(s) 126, 659, 2464, 2675, 4377, 5627, 6935, 7786
AspLEI GCGC 7 cut(s) 1312, 3444, 4821, 5573, 5575, 5963, 7107
AsuC2I CCSGG 4 cut(s) 351, 3046, 3950, 3980
AsuII TTCGAA 1 cut(s) 3711
AvaI CYCGRG 2 cut(s) 183, 6857
AvaII GGWCC 6 cut(s) 63, 809, 2054, 2497, 6358, 6965
BaeI ACNNNNGTAYC 2 cut(s) 4433, 4466
BalI TGGCCA 3 cut(s) 3025, 3744, 5093
BanI GGYRCC 1 cut(s) 3354
BanII GRGCYC 3 cut(s) 6574, 6888, 7540
BarI GAAGNNNNNNTAC 2 cut(s) 4077, 4109
BauI CACGAG 1 cut(s) 5052
BbsI GAAGAC 3 cut(s) 2547, 4938, 7887
Bbv12I GWGCWC 7 cut(s) 226, 895, 1243, 4633, 4862, 6888, 7540
BceAI ACGGC 2 cut(s) 776, 1297
BcgI CGANNNNNNTGC 2 cut(s) 1659, 1693
BclI TGATCA 2 cut(s) 4129, 6849
BcnI CCSGG 4 cut(s) 351, 3046, 3950, 3980
BcuI ACTAGT 1 cut(s) 7813
BfoI RGCGCY 3 cut(s) 1313, 4822, 7108
BfuAI ACCTGC 3 cut(s) 2868, 4594, 5777
BglII AGATCT 3 cut(s) 2883, 4165, 6139
BlpI GCTNAGC 1 cut(s) 138
Bme18I GGWCC 6 cut(s) 63, 809, 2054, 2497, 6358, 6965
BmeRI GACNNNNNGTC 1 cut(s) 3462
BmeT110I CYCGRG 2 cut(s) 183, 6857
BmrI ACTGGG 4 cut(s) 750, 3315, 5137, 6687
BmuI ACTGGG 4 cut(s) 750, 3315, 5137, 6687
BoxI GACNNNNGTC 1 cut(s) 2693
BpiI GAAGAC 3 cut(s) 2547, 4938, 7887
BplI GAGNNNNNCTC 2 cut(s) 2897, 2929
BpmI CTGGAG 5 cut(s) 89, 4500, 6252, 7072, 7554
Bpu10I CCTNAGC 4 cut(s) 3468, 3913, 4815, 5514
Bpu1102I GCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 3711
BpuEI CTTGAG 7 cut(s) 1154, 1227, 2214, 4091, 4721, 6059, 7526
BpuMI CCSGG 4 cut(s) 351, 3046, 3950, 3980
BsaBI GATNNNNATC 2 cut(s) 3000, 6435
BsaHI GRCGYC 3 cut(s) 6084, 7225, 7965
BsaI GGTCTC 2 cut(s) 2743, 6427
BsaWI WCCGGW 2 cut(s) 1401, 2780
BsaXI ACNNNNNCTCC 4 cut(s) 6129, 6159, 7991, 8021
Bse3DI GCAATG 6 cut(s) 1105, 1707, 2052, 2847, 5022, 6852
Bse8I GATNNNNATC 2 cut(s) 3000, 6435
BseJI GATNNNNATC 2 cut(s) 3000, 6435
BseMI GCAATG 6 cut(s) 1105, 1707, 2052, 2847, 5022, 6852
BsePI GCGCGC 1 cut(s) 5571
BseRI GAGGAG 7 cut(s) 2105, 3599, 5541, 5909, 7501, 7504, 7999
BseYI CCCAGC 2 cut(s) 5739, 7429
BsgI GTGCAG 5 cut(s) 1722, 4617, 5460, 6586, 7731
Bsh1236I CGCG 1 cut(s) 5573
Bsh1285I CGRYCG 1 cut(s) 1371
BshNI GGYRCC 1 cut(s) 3354
BsiEI CGRYCG 1 cut(s) 1371
BsiHKAI GWGCWC 7 cut(s) 226, 895, 1243, 4633, 4862, 6888, 7540
BsiHKCI CYCGRG 2 cut(s) 183, 6857
BsiSI CCGG 8 cut(s) 351, 1402, 2781, 3046, 3949, 3979, 5151, 8137
BslFI GGGAC 6 cut(s) 49, 2903, 3306, 3703, 5666, 6344
BsmBI CGTCTC 1 cut(s) 4372
BsmFI GGGAC 6 cut(s) 49, 2903, 3306, 3703, 5666, 6344
BsmI GAATGC 5 cut(s) 196, 1232, 1941, 6151, 6554
Bso31I GGTCTC 2 cut(s) 2743, 6427
BsoBI CYCGRG 2 cut(s) 183, 6857
Bsp119I TTCGAA 1 cut(s) 3711
Bsp1286I GDGCHC 8 cut(s) 226, 895, 1243, 4633, 4862, 6574, 6888, 7540
Bsp1407I TGTACA 1 cut(s) 2166
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp19I CCATGG 2 cut(s) 6926, 7460
BspFNI CGCG 1 cut(s) 5573
BspHI TCATGA 5 cut(s) 1435, 3622, 4554, 5071, 6637
BspMAI CTGCAG 5 cut(s) 1309, 2865, 3421, 5353, 5392
BspMI ACCTGC 3 cut(s) 2868, 4594, 5777
BspPI GGATC 6 cut(s) 96, 1981, 2352, 3063, 3231, 6223
BspT104I TTCGAA 1 cut(s) 3711
BspT107I GGYRCC 1 cut(s) 3354
BspTNI GGTCTC 2 cut(s) 2743, 6427
BsrDI GCAATG 6 cut(s) 1105, 1707, 2052, 2847, 5022, 6852
BsrGI TGTACA 1 cut(s) 2166
BssHII GCGCGC 1 cut(s) 5571
BssNI GRCGYC 3 cut(s) 6084, 7225, 7965
BssSI CACGAG 1 cut(s) 5052
BssT1I CCWWGG 9 cut(s) 1088, 2317, 2493, 2556, 5403, 5776, 6629, 6926, 7460
Bst2BI CACGAG 1 cut(s) 5052
Bst6I CTCTTC 7 cut(s) 1228, 2080, 2322, 3243, 4212, 5190, 5657
BstACI GRCGYC 3 cut(s) 6084, 7225, 7965
BstAPI GCANNNNNTGC 3 cut(s) 230, 5258, 7754
BstAUI TGTACA 1 cut(s) 2166
BstBI TTCGAA 1 cut(s) 3711
BstDSI CCRYGG 3 cut(s) 792, 6926, 7460
BstENI CCTNNNNNAGG 1 cut(s) 5780
BstFNI CGCG 1 cut(s) 5573
BstH2I RGCGCY 3 cut(s) 1313, 4822, 7108
BstHHI GCGC 7 cut(s) 1312, 3444, 4821, 5573, 5575, 5963, 7107
BstMCI CGRYCG 1 cut(s) 1371
BstMWI GCNNNNNNNGC 9 cut(s) 230, 752, 1865, 3531, 3926, 4987, 5258, 5735, 7754
BstNSI RCATGY 9 cut(s) 601, 1796, 3497, 3522, 3933, 4204, 4667, 5498, 8031
BstPAI GACNNNNGTC 1 cut(s) 2693
BstUI CGCG 1 cut(s) 5573
BstV2I GAAGAC 3 cut(s) 2547, 4938, 7887
BstX2I RGATCY 7 cut(s) 88, 2883, 3055, 3223, 4165, 6139, 6228
BstXI CCANNNNNNTGG 2 cut(s) 3021, 5043
BstYI RGATCY 7 cut(s) 88, 2883, 3055, 3223, 4165, 6139, 6228
BtgI CCRYGG 3 cut(s) 792, 6926, 7460
BtgZI GCGATG 1 cut(s) 5719
BtsI GCAGTG 4 cut(s) 753, 1665, 7874, 7940
BveI ACCTGC 3 cut(s) 2868, 4594, 5777
CaiI CAGNNNCTG 6 cut(s) 440, 3305, 3425, 3737, 5258, 6661
CciI TCATGA 5 cut(s) 1435, 3622, 4554, 5071, 6637
CfoI GCGC 7 cut(s) 1312, 3444, 4821, 5573, 5575, 5963, 7107
CseI GACGC 4 cut(s) 3052, 6092, 7214, 7973
CsiI ACCWGGT 1 cut(s) 7078
CspCI CAANNNNNGTGG 6 cut(s) 304, 339, 3015, 3050, 5004, 5039
DraI TTTAAA 5 cut(s) 490, 1920, 4195, 4482, 7515
DraIII CACNNNGTG 1 cut(s) 5100
DrdI GACNNNNNNGTC 1 cut(s) 1058
DriI GACNNNNNGTC 1 cut(s) 3462
DseDI GACNNNNNNGTC 1 cut(s) 1058
EaeI YGGCCR 3 cut(s) 3023, 3742, 5091
Eam1104I CTCTTC 7 cut(s) 1228, 2080, 2322, 3243, 4212, 5190, 5657
Eam1105I GACNNNNNGTC 1 cut(s) 3462
EarI CTCTTC 7 cut(s) 1228, 2080, 2322, 3243, 4212, 5190, 5657
Ecl136II GAGCTC 2 cut(s) 6886, 7538
Eco130I CCWWGG 9 cut(s) 1088, 2317, 2493, 2556, 5403, 5776, 6629, 6926, 7460
Eco147I AGGCCT 3 cut(s) 2492, 4362, 5804
Eco24I GRGCYC 3 cut(s) 6574, 6888, 7540
Eco31I GGTCTC 2 cut(s) 2743, 6427
Eco32I GATATC 3 cut(s) 2911, 3607, 4288
Eco47I GGWCC 6 cut(s) 63, 809, 2054, 2497, 6358, 6965
Eco47III AGCGCT 1 cut(s) 4820
Eco53kI GAGCTC 2 cut(s) 6886, 7538
Eco88I CYCGRG 2 cut(s) 183, 6857
EcoICRI GAGCTC 2 cut(s) 6886, 7538
EcoNI CCTNNNNNAGG 1 cut(s) 5780
EcoO109I RGGNCCY 2 cut(s) 809, 4696
EcoRI GAATTC 5 cut(s) 772, 2381, 3124, 4064, 6718
EcoRV GATATC 3 cut(s) 2911, 3607, 4288
EcoT14I CCWWGG 9 cut(s) 1088, 2317, 2493, 2556, 5403, 5776, 6629, 6926, 7460
EcoT22I ATGCAT 4 cut(s) 1941, 3931, 5814, 6153
EcoT38I GRGCYC 3 cut(s) 6574, 6888, 7540
ErhI CCWWGG 9 cut(s) 1088, 2317, 2493, 2556, 5403, 5776, 6629, 6926, 7460
Esp3I CGTCTC 1 cut(s) 4372
FalI AAGNNNNNCTT 2 cut(s) 1636, 1668
FaqI GGGAC 6 cut(s) 49, 2903, 3306, 3703, 5666, 6344
FauI CCCGC 3 cut(s) 3654, 5362, 5643
FbaI TGATCA 2 cut(s) 4129, 6849
FblI GTMKAC 5 cut(s) 1301, 1371, 4102, 6201, 7623
FriOI GRGCYC 3 cut(s) 6574, 6888, 7540
GlaI GCGC 7 cut(s) 1311, 3443, 4820, 5572, 5574, 5962, 7106
GsaI CCCAGC 2 cut(s) 5743, 7433
GsuI CTGGAG 5 cut(s) 89, 4500, 6252, 7072, 7554
HaeII RGCGCY 3 cut(s) 1313, 4822, 7108
HapII CCGG 8 cut(s) 351, 1402, 2781, 3046, 3949, 3979, 5151, 8137
HgaI GACGC 4 cut(s) 3052, 6092, 7214, 7973
HhaI GCGC 7 cut(s) 1312, 3444, 4821, 5573, 5575, 5963, 7107
Hin1I GRCGYC 3 cut(s) 6084, 7225, 7965
Hin6I GCGC 7 cut(s) 1310, 3442, 4819, 5571, 5573, 5961, 7105
HinP1I GCGC 7 cut(s) 1310, 3442, 4819, 5571, 5573, 5961, 7105
HincII GTYRAC 7 cut(s) 1372, 1589, 1761, 4103, 4386, 7048, 7624
HindII GTYRAC 7 cut(s) 1372, 1589, 1761, 4103, 4386, 7048, 7624
HindIII AAGCTT 8 cut(s) 1455, 1873, 2732, 3860, 5145, 5625, 6509, 6908
HpaII CCGG 8 cut(s) 351, 1402, 2781, 3046, 3949, 3979, 5151, 8137
Hpy99I CGWCG 2 cut(s) 4104, 4638
HpyCH4IV ACGT 4 cut(s) 590, 1298, 3867, 7204
HpyF10VI GCNNNNNNNGC 9 cut(s) 230, 752, 1865, 3531, 3926, 4987, 5258, 5735, 7754
HpySE526I ACGT 4 cut(s) 590, 1298, 3867, 7204
Hsp92I GRCGYC 3 cut(s) 6084, 7225, 7965
HspAI GCGC 7 cut(s) 1310, 3442, 4819, 5571, 5573, 5961, 7105
Ksp22I TGATCA 2 cut(s) 4129, 6849
MabI ACCWGGT 1 cut(s) 7078
MaeII ACGT 4 cut(s) 590, 1298, 3867, 7204
MfeI CAATTG 1 cut(s) 7327
MflI RGATCY 7 cut(s) 88, 2883, 3055, 3223, 4165, 6139, 6228
MhlI GDGCHC 8 cut(s) 226, 895, 1243, 4633, 4862, 6574, 6888, 7540
MlsI TGGCCA 3 cut(s) 3025, 3744, 5093
MluNI TGGCCA 3 cut(s) 3025, 3744, 5093
MmeI TCCRAC 9 cut(s) 920, 1079, 2096, 2385, 2726, 5949, 6943, 7089, 8048
Mox20I TGGCCA 3 cut(s) 3025, 3744, 5093
Mph1103I ATGCAT 4 cut(s) 1941, 3931, 5814, 6153
MroXI GAANNNNTTC 8 cut(s) 126, 659, 2464, 2675, 4377, 5627, 6935, 7786
MscI TGGCCA 3 cut(s) 3025, 3744, 5093
MslI CAYNNNNRTG 4 cut(s) 1331, 1440, 1482, 5082
Msp20I TGGCCA 3 cut(s) 3025, 3744, 5093
MspA1I CMGCKG 1 cut(s) 7859
MspI CCGG 8 cut(s) 351, 1402, 2781, 3046, 3949, 3979, 5151, 8137
MssI GTTTAAAC 1 cut(s) 4195
MunI CAATTG 1 cut(s) 7327
Mva1269I GAATGC 5 cut(s) 196, 1232, 1941, 6151, 6554
MvnI CGCG 1 cut(s) 5573
MwoI GCNNNNNNNGC 9 cut(s) 230, 752, 1865, 3531, 3926, 4987, 5258, 5735, 7754
NciI CCSGG 4 cut(s) 351, 3046, 3950, 3980
NcoI CCATGG 2 cut(s) 6926, 7460
NmeAIII GCCGAG 2 cut(s) 6530, 7993
NmuCI GTSAC 8 cut(s) 3092, 3454, 3727, 5117, 7213, 7347, 7444, 7886
NsiI ATGCAT 4 cut(s) 1941, 3931, 5814, 6153
NspI RCATGY 9 cut(s) 601, 1796, 3497, 3522, 3933, 4204, 4667, 5498, 8031
NspV TTCGAA 1 cut(s) 3711
PaeI GCATGC 4 cut(s) 1796, 3522, 4667, 5498
PagI TCATGA 5 cut(s) 1435, 3622, 4554, 5071, 6637
PaqCI CACCTGC 1 cut(s) 4594
PauI GCGCGC 1 cut(s) 5571
PceI AGGCCT 3 cut(s) 2492, 4362, 5804
PciI ACATGT 4 cut(s) 597, 3493, 4200, 8027
PctI GAATGC 5 cut(s) 196, 1232, 1941, 6151, 6554
PdmI GAANNNNTTC 8 cut(s) 126, 659, 2464, 2675, 4377, 5627, 6935, 7786
PflFI GACNNNGTC 1 cut(s) 2112
PflMI CCANNNNNTGG 4 cut(s) 1094, 1387, 1607, 2745
PfoI TCCNGGA 2 cut(s) 1989, 2038
PmeI GTTTAAAC 1 cut(s) 4195
PpuMI RGGWCCY 1 cut(s) 809
PscI ACATGT 4 cut(s) 597, 3493, 4200, 8027
PshAI GACNNNNGTC 1 cut(s) 2693
PshBI ATTAAT 7 cut(s) 2970, 5478, 5606, 6131, 7260, 7386, 7551
PsiI TTATAA 3 cut(s) 1980, 2069, 2342
Psp124BI GAGCTC 2 cut(s) 6888, 7540
Psp1406I AACGTT 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 809
PspFI CCCAGC 2 cut(s) 5739, 7429
PspPPI RGGWCCY 1 cut(s) 809
PsrI GAACNNNNNNTAC 4 cut(s) 2849, 2881, 4779, 4811
PstI CTGCAG 5 cut(s) 1309, 2865, 3421, 5353, 5392
PstNI CAGNNNCTG 6 cut(s) 440, 3305, 3425, 3737, 5258, 6661
PsuI RGATCY 7 cut(s) 88, 2883, 3055, 3223, 4165, 6139, 6228
PsyI GACNNNGTC 1 cut(s) 2112
PteI GCGCGC 1 cut(s) 5571
PvuII CAGCTG 1 cut(s) 7859
RseI CAYNNNNRTG 4 cut(s) 1331, 1440, 1482, 5082
SacI GAGCTC 2 cut(s) 6888, 7540
SalI GTCGAC 3 cut(s) 1370, 4101, 7622
SduI GDGCHC 8 cut(s) 226, 895, 1243, 4633, 4862, 6574, 6888, 7540
SexAI ACCWGGT 1 cut(s) 7078
SfuI TTCGAA 1 cut(s) 3711
SinI GGWCC 6 cut(s) 63, 809, 2054, 2497, 6358, 6965
SmiI ATTTAAAT 1 cut(s) 7515
SmiMI CAYNNNNRTG 4 cut(s) 1331, 1440, 1482, 5082
SmlI CTYRAG 7 cut(s) 1133, 1242, 2229, 4106, 4700, 6038, 7541
SmoI CTYRAG 7 cut(s) 1133, 1242, 2229, 4106, 4700, 6038, 7541
SpeI ACTAGT 1 cut(s) 7813
SphI GCATGC 4 cut(s) 1796, 3522, 4667, 5498
SseBI AGGCCT 3 cut(s) 2492, 4362, 5804
SspI AATATT 4 cut(s) 1606, 1659, 5232, 5643
SstI GAGCTC 2 cut(s) 6888, 7540
StuI AGGCCT 3 cut(s) 2492, 4362, 5804
StyI CCWWGG 9 cut(s) 1088, 2317, 2493, 2556, 5403, 5776, 6629, 6926, 7460
SwaI ATTTAAAT 1 cut(s) 7515
TaiI ACGT 4 cut(s) 593, 1301, 3870, 7207
TaqII GACCGA 1 cut(s) 1357
TatI WGTACW 2 cut(s) 2166, 6273
TauI GCSGC 3 cut(s) 3525, 5729, 7681
TseFI GTSAC 8 cut(s) 3092, 3454, 3727, 5117, 7213, 7347, 7444, 7886
Tsp45I GTSAC 8 cut(s) 3092, 3454, 3727, 5117, 7213, 7347, 7444, 7886
TspGWI ACGGA 2 cut(s) 1642, 4388
Tth111I GACNNNGTC 1 cut(s) 2112
Van91I CCANNNNNTGG 4 cut(s) 1094, 1387, 1607, 2745
VpaK11BI GGWCC 6 cut(s) 63, 809, 2054, 2497, 6358, 6965
VspI ATTAAT 7 cut(s) 2970, 5478, 5606, 6131, 7260, 7386, 7551
XagI CCTNNNNNAGG 1 cut(s) 5780
XbaI TCTAGA 3 cut(s) 2902, 3004, 6170
XceI RCATGY 9 cut(s) 601, 1796, 3497, 3522, 3933, 4204, 4667, 5498, 8031
XcmI CCANNNNNNNNNTGG 1 cut(s) 1095
XmiI GTMKAC 5 cut(s) 1301, 1371, 4102, 6201, 7623
XmnI GAANNNNTTC 8 cut(s) 126, 659, 2464, 2675, 4377, 5627, 6935, 7786
Zsp2I ATGCAT 4 cut(s) 1941, 3931, 5814, 6153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.