RchiOBHm_Chr4g0446031

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000223
Physical Location & Seq
Forward (+)
66345017 .. 66358760
13744 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41356

Sequence Viewer

Length: 9099 bp
ATGATGGAGGTTTCAGGCAAGAAAAAGATCAAGCCTGACCCTTTCACTGATATTGTGTTTTCTTGGTCCCTGGAGGACATTTTCAATGAGGATCTTTACAAAGACAAGGTTCTCATCATTCTGGATTCTCTGTTTCTTCAAATGTTGTTGAGTTTGGTGAAAAAGATTCCTGAATCATTTCAATCGGCTCAACATTACTTTCGGTCTTATATATATCCTTTACTGGAAGAAACCCGAGCAGAATTGCATTCAAATATGAAAACTCTTAATAGAGCACCGTTTGCTCAAGTAGTGGGTTTTGAAGAAGCCCAGCCATATGGAACAAAGCTATATGATGTCAAGGTTGATTACTGGCATAACAGGTTCATTGATAGTGGCAAGGAGCCATATAAAACTTTGCCCGGTGATCTTTTTGTTTTAGCTGATGCTAAACCTGAAACTGTTTCCGATTTACAAAGAGTAGGGAGGTCATGGGCTTTTGCATCGGCCACTAATTATGTCCCAGAAAGTGAGAATGAAGATGACAGTACCTCTCTTTATTTCAAAGTCATGGCATCAAAAGAGTTTGAAGTCAAAAATAGCACGACATCACTTTTTATAGTTTTCTTGGGGAGTTTAATCCGTGATGGAAGAATTTGGAAAGCGTTGCACATGTCCAGAAATCTGAATATTATCAACGAAGTTCTATGCACTGATTCTATGCCGCTTGCGGCTGCAGAAGGCATCTTATCATCTTTTATCAATATATTGAGATTATTCTCTTTTATCTCTGGTGGACTCCAGAATCGTTTGCTTAGGTTTATTGCTGGTAAACCTAGTTTATCATTCCGACTGCGTCATTTATCATCTGGATTGAATGAATCCCAAACTGGGGCAGTGTTGGCCTGCCTTGAAATGCTGCATTCTGGTGAAAAGTCTGCCGTGCAACTTATCTGGGGTCCTCCTGGTACTGGAAAAACAAAAACCACAGTTACTCTGCTTTCAACCCTGCTACAGATGAATTGTAGGACTCTTATTTGTGCTCCAACAAATGTTGCAATAACTGGAGTTGCTTCTCGTCTTGTGAAGATGGTGAGTAAAGCAGAGCCAAATGATTTGTTTTGTTCTTTAGGAGAAATTCTTCTGTTTGGGAATAAGGAGCGACTCAAAATTGGTGCAGACATTGAAGAAATTTATATGGATTGCCGTGTCAAAAGGCTTGAAGATTTTTTGGGGCCAAAGACTGGTTGGAGGGATTGCTTTGCTTCCATGATAGGTTTACTTGAGGATTGTGTTTCTGATTACCATATTTTCTTGGAAAATGAGTTCATGAAAGAGGCAGAACTAAAGAATGTCAGTGAAACAAAAGATAAAGAATGCAGAAGAGGTGCTCAAGTTAAAAAGGAGAAATGCAAAACATTTGTTGAATTTTTGAGAGATGGATTTGGGTCTACTGCAACGCCGTTAAGATATTGCATTTCTGTGTTCTGTACTCATATAGGGAAAAATTATATTTCGGTAGACAATTTCCAAGCCTTGTTGCTTTATGTGGTGAAAAAGATTCCTGAATCATTTCAATCGGCTCAGCATTACTTTGGGTCTTATATATATCCTTTACTAGAAGAAACCCGAGCAGAATTGCATTCAAGTATGGAAACTCTTAATAGAGCACCGTTTGCTGAAGTAGTGGGTTTTGAAGAAGCCAAGCCATATGGAACAAAGCAATATGATGTCAAGGTTGATTGCTGGCGAAACAGGTTCATTGATAGTGGCAAGGAGCCATATAAAACTTTGCCCGGTGATCTTTTTGTTTTAGCTGATGCTAAACCTGAAACTGTTTCTGACTTACAAAGAGTAGGGAGGTCATGGGCTTTTGCTTCGGCCACTTATGTCCCAGGATGTGAGAATGAAGATGACAGTACCTCTCTTTATTTCAAAGTCAAGGCATCAAAAGAGATTGAAGTCGAAAATAGCAGGACATCACTTTTTATAGTTTTCTTGGTGAGTTTGGTCCGTGATGGAAGAATTTGGAAAGCGTTGCACATGTCCAGAAATCTGAAGATTATCAACGAAGTTCTATGCACTGATTCTATGGTTCAGAAAGATTTCTGCTCTGAAAGGAAAAATGACATCTGGAATCAGAGTATAGTTGAGAGTTTATCATCTGGATTGAATGAATCCCAAACTGGGGCAGTGTTGGCCTGCCATGAAATGCTGCATTCTGGTGAAAAGTCTGCTGTGGAACTTATCTGGGGTCCTCCTGGTACTGGAAAAACAAAAACCACAGTCACTCTGCTTTCAACCCTGCTACAGATGAATTGTAGGACTCTTATTTGTGCTCCAACAAATGTTGCAATAACTGGAGTTGCTTCTCGTCTTGTGAAGATGGTGAGTAAAGCAGAGCCAAATGATTTGTTTTGTTCTTTAGGAGAAATTCTTCTGTTTGGTAATAAGGAGCGACTCAAAATTGGTGCAGACATTGAAGAAATTTATATGGATTGCCGTGTCAAAAGGCTTGTAGATTGTTTTGGGCCAAGGACTGGTTGGAGGCCTTGCTTTTCTTCCATGATCGGTTTACTTGAGGATTGCGTTTCTGATTACCATATTTTCTTGGGAAATGAGTTCACGAAAGAGACAGAACTAAAGAATGTCAGTGAAACAAAATATAAAGAATGCAGAAGAGGTGCTCAAGTTATAAAGGAGAAACGCAAAACATTTGTTCAATTTTTGAGAGAGAGATTTTTGTCTACTGCAACGCCATTAAGATATTGCATTTCTGTGCTCTGTACTCATATAGGGAAAAATTATATTTCTGTAGACAATTTCCAAGACTTGATTTCGCTTATCCGGTTAGTTGATTCCTTTGAGTTACTGTTGTCTCAAGATAATGTTGATTCTGAAGCTTTGGAAGAACTCTTTTCTCATTCGGATGTTGAAGATGTGTCCGAGTCGTTTGTAGGTTACTCCTTTGATCTTTGTATGATAAGAAGGGATTGCCTTTCAGCTTTACGCACTCTACGGGATTCTCTTAGTCAACTTAAACTTCCAAATATTAAGAATGAGGAATCTATACGGAAGTTCTGTTTTCAAAGAGCATCTCTAATATTTTGCACTGCATCTACTTCGTATAAGCTGCATAGAGTGGCAATGGAACCACTAAGCATTGTTGTTATTGACGAGGCTGCACAGCTAAAAGAGTGTGAGTCAACAATACCCCTGCAACTTCCAGGTGTGAAGCATGCTGTTCTTGTTGGTGATGAATGTCAGTTACCAGCTACGGTAATAAGCAAGGTTTCTGATGAAGCTGGTTTTGCAAGAAGCTTGTTTGAGAGGTTGAGCTTAATGGGTCATTCAAAACATATTTTAAATATGCAATACAGAATGCATCCATCAATAAGTTTATTCCCAAATTCAAATTTCTATAAAGACTTGATCCAGGATGCTCCAAATGTAAAACGAAGAAGCTATGAGAAGCACTATCTTCCAGGAGCAATGTTTGGTCCTTATTCTTTTATAAATGTGATTGATGGAAGAGAGGAAAAAGAAGAGGATGGACCCAGTCGGAAAAATATAGTGGAGGTTGCTATTGTTTCAAAAATACTGCGGAATCTGTACAAAGGATGGGTTGAATCAAAACAGAGACTCAGTATTGGTATAGTGTCTCCCTATGCTGCTCAAGTAATCACAATTAAGGACAGAGTGGGTAAGAAATATGATAAGCTTGATGGCTTTGAAGTGAAGGTAAAAACAGTTGATGGGTTTCAAGGTGGGGAAGAGGACATAATTATAATGTCCACCGTACGATCCAACAGCCATCAATCACTTCAGTTCATTTCAAAATCGCAGAGAGTTAATGTCTCTCTTACAAGGGCTAGGCACTGTTTGTGGATTTTGGGGAATGAAAGAACGCTTTGCAATGGTGAATCTGTTTGGAATGACTTGGTCCTTGAGGCCAAAAGTCGTCGATGCTTCTTTAATGCCGATGAAGACAAGGATTTAGCCAAGGCCATATTAGGGTTAAAGAAAGAGTTTGATCAATTTGATGATTTGCTCAATGCCAACAGCATAGTTTTTAGAAGCGCTAGATGGAAGGTACTTTTCAGTGAATACTTTCTGAAGTCATTCAAGAAACTGACATCAGTCCGCTTGAAGAAGTCGGCGCTAAATCTTCTACTGAAGCTTTCCAGTGGTTGGAGACCAAAGAGGCGAAGTGTTGAGACACATTCTGGTAGCTCTTCCATGATCTTGAAGAAATTTAAAGTTGAAGGTCTGTACATTGTTTGCACTAATGACATCTCAAAGAACCTACAATACGTTCAAGTATTAAAGATCTGGGACATATTGCCTCTGGAGGATATCCCAAAGTTGATAAACCGCCTGGATGGTATTTTCAACAGATATACTGATAACTTTATCAATCTTTGCAAGGAGAAGTGTCTCCATGGTGATCTAGAGGTTCCAAAAAGCTGGTCACCGTCTTTGGAATTTTCCCAGTTTAAGGATCTTATCATTAGTGAAGCTCAGAGTGATTTAGTTGGTGACACTTCTGATTGTAGAAGCTATGTTGAGAATTCACAGGTTAGCGAGAGTTTGTTGCTGATGAAATTTTATTCCTTATCATCTGGGGCAGTAAACCACTTGCTGTCAGACCGTGAGGGTAGAGAACTAGATCTTCCATTTGAAGTTACAGATGAAGAGATGGATATTATCCTTTATCGTAGAAGTTCCTTTATAGTGGGACGATCGGGAACTGGGAAAACTACAGTTTTAACCATGAAATTGTTTAAAAAAGAACAGTGCCACCAATTTGCAGTTGAAGGATGCTATAGTAGTCAAGATACTAGCAAGGTTGAGCAGAGTTCTGCAGCTACTGAAGGGAATGTTCTGCGCCAGCTTTTTGTGACAGTGAGTCCTAAGCTATGTTTTGCCATCAAGCGACATGTTTCACACTTGAAAAGTTTTGCATGTGGCGGAGGTAACTCAACTGAAAGAGGTTTAATTGATATGGCTGATTTTGATGAGGAGGAAAACCAATTCAAGGATTTCCAAGATTCATTTCATGATATTCCTCCGAGTTCTTACCCACTTGTCATTACATTTCATAAGTTTCTGATGATGCTCGATGGAACATTGAGTAACTCATACTTTGAAAGATTCCTTGATGTGAAAGCTACTGTTGGCCATTTTAAGAGTTCGAGATCAGTTGCATTTCAGAGCTTTATAAGGACGAAAGAAGTTAATTATGAGAGGTTTAGCTCTTTGTATTGGCCCCGTTTTAATACTAAGATAACAAAGAAGCTTGACATTTCAAGAGTCTTTATAGAGATTATTTCTTACATAAAAGGTGGCTTAGGAGCTATAGATGCATGTGATGGTAAACTCAGCCGGGAGGATTATGTTCAACTGTGCGAGGGCCGGGGTTCTAATTTGAGCAAGCAAAAGAGAGAAGCAATATACGATGTTTTTCAGGCTTATGAAAAGTTGAAGAAGGAAAATGGTGAATTTGATCTGGCTGATTTTGTAATTGATCTTCACCGTCGGCTCAAGCATGAAAATATAAGGGGATTTGTCTTTTCTGGTGATACAGCACAAACAATAGCAAGGGGTATTGACTTTAGGTTTCAGGATATACGACATCTGTTCTACAAGAAGTTTGTATTGGAGTCAAGAAACAATAACAACGATGAAAAAGGCCTCATCTCTGAATTACTTCAGTTGACTCAAAACTTCCGTACTCATGCTGGTATATTGAAGTTATCACAAAGCATTGTTGAACTACTGTATCGGTTTTTCCCCTTTTCTGTTGATGTTTTAAAACCTGAAACCAGTCTGATTTATGGTGAAGCTCCAGTTTTGCTTGAATCTGGGGAAAACGAAAATGCAATCATGAAAATTTTTGGTAACAGTGGAAATATGGTTGGCTTTGGTGCAGAGCAGGTGATTTTGGTGCGAGATGATAGTGCTCGACGAGAAATATCCAAATTTGTAGGGAAGCATGCTCTTGTCCTAACCATAGTGGAGTGTAAGGGCCTTGAGTTTCAGGATGTCCTCTTATACAACTTTTTCAGCACATCACCTTTGAAAAATCAGTGGAGGGTTATATATGATTACATGAAGGAACAAGATTTACTCGACTCCACATCACCTATGCGCTTTCCAAGTTTCAGTGAATCGAAACACAACATATTGTGCTCTGAACTGAAGCAATTATATGTGGCTGTTACTCGAACAAGACAGAGATTGTGGATTTGTGAAAATGTGGAAGACCTCTCGAAACCTATGTTTGACTATTGGAAGAAAAAATGTCTTGTGCAACAAAGGCAGCTAGATGATTCACTTACCCAGGCCATGCAAGTGGCAAGCAGTCCAGAGGAGTGGAAATCCCGAGGCACTAAGCTATATCATGAACATAACTATGAAATGGCCACAATGTGCTTTGAAAGAGCTGGTGACACTTACTGGGAAAGGAGGTCTAAAGCCTCCGGCCTTAAAGCTATTGCTGACCGTATGCGAACATCAAATCCCGAAGAGGCTAAATCGATCCTTAGAAAAGCTGCTGAAATATTTGATGCTATTGGCAAGGCAGATTCTGCTGCGAGATGTTTTTCTGATTTGGGGGAGTATGAAAGAGCAGCTAGGATATATTTGGAAAAATGTGGAGACTCTGAACTTCAGAGAGCGGCAGAATGTTTTTCACTAGCGGGATGCTATAAGGATGCTGCAGATGTCTATGCCAAGGGAAATTTTTTCTCAGAGTGTCTCACTGTTTGTGCAAATGGGAAACTATTTGAAATGGGTTTGCAGTATATTAATTATTGGAAACAGCATGCTGTTGAGGACCGTGCTAAGGCTAGTAGAGGGGAAGGAATAGATAAAATGGAGCAGGAATTTTTAGAGAGCTGCGCACTTCACTATCATAAGTTGAAAGATAACAGATTCATGATGAAATTTGTGAAAGCTTTCAATTCTATAATATTGATGCGGGACTTTTTGAAGAATATAGGGAGCCTTGATGAGCTTTTGTCATTGGAGGAAGAATTTGGAAATTATCTGGAAGCCGCAAACATCGCCCAGCTTAAAGGTGAAATCCTACTTGAATCTGATTTCCTTGGAAAGGCAGGTAAGTTCAAAGAGGCCTCACTGCATATTCTGTTTTATGTAATTTCCAAGTCTCTTTGGTCATCTGGTGGCAAGGGCTGGCCCATGGAAAAGTTTCCACAACAGGGGGAGCTTCTGACAAAGGCCAAGTCATTTGCCAAGAATGGGAAAGATAACGTTTATCAGCTGGTTTGCGCTGAGTCGGAGATTTTATTGAATGGGCAGGATAACTTGGCTGTTTTGAAACATCAAATGGATGCTTCTGAAAGACATCAGAGTATTAGAGGTGAAGTGTTATCAGCTCGAAAAATTTTGGACGCCCATTTTTCTTCAAGAACTGATGAGTATTTATGGGAGAAAGAATTGATTGGAGATCTTGTAAAGCATTCAGAAGATAAAATATCTAGAAATCAGGTGTCCATTGATTCGCTTGTCTACTACTGGAATTTCTGGAAGGAGAAGATTCTTCACATCATTGAATCTGTAGGATGTGTGGAAACTCCAGGGTACAATAGTTATGTAGAACTCTGTTTTACTTGTTTAGGAGTTTGGAGGTTGTATCATAATCTGAATCCAATCTATGTTTTACTGGTCCCTGATGCTGATTGGGTTAGAGATCTGGACAAAAGGCATTTGAAAAGTTATGGGAAGTTGGTCTCCATTGATGTTCATCAGCTCATTTCAGCAGCTCAGTATTATTGGAGTTCAGAACTGCTCTCCGTTGGCATCAAAGTTTTGGAGAAGCTTGAAGCACTTTTCAAGTTCCCACTGAAGAATTCTGACTCGACATTCTTCCAGTGCAGGGCACTTACCCTTATCTATGATGTTGCAAGAAATCTTTTGGATTCCAAATGTCTGAAGCCAAGGTATCAAGATTGCTTGACACTACAGAATATGGTAACATTTTCGACTGGGGAGTATGTTGATTACATCTTTCCCTTAGATTGGAGGAATTCATTGAGACAGAATATGATTTCTCTTAGAAGAACTGATGCTTCAAAGAATGTGCTGAATCAAGTTATAGTTGAATATGCCAGCTTGAACGACGAGCTGTCTTATGGGCAGATTGGAAGGATCGCAATGATCATCCTCGGGTCAGGTAAGCTGCTGAATACTGAGCTCTGTGTTCAGCTTGTGAAAAAGCTTGAAATCAATAAACCATGGAAGGCCTTCATTGAGAATCTCTGTGCAAGCATTGGACCTGAACATACTCGTCAGGAACCAATAGAGGTGTCTGTCATGTGGTGGTTACATGATGCTTTGGTTGAAACTTATAGTGCCAACTGGAGGGAGGTTTCCGACTACATAACACCTGGTTGCTTCTTGTATCTTGTGGAGCGCCTTCTGTTTTCCGCAAGTTGCTCTCAAGGTTTTGTCATCACTACAAGTTCTTGCTTTATTGAATGGCTGATATACCAGGATGAAGATACCAGCTTACGTTCCATGGTGACTGGTGGGGGCCATTCTCTGGACGACATTCTTCCATTTGTGATTACTGTGGTTCGCGAGTGTATTTTTATCAAGAAGGATATGATTGAATGGATTGAGAAGTCCGACAGAAATTGGATGCAGTATTATCAGCCACTCATGTTGCGATTGGTAATTGTCTTGTGTTTGATTCATTTGAACTTTGGCTCGTGTTTGGATATGATCCATGATTTGCTGGGAAGTGACTTTATCACTGAACTCGTACCATGGGAGTTTTATGATGCACTTAGCAGGAGGAGGAAACCCAATTCTCTCATTTTAGATGTGAATGTCCTTGCTGGAGCTCTCAAGAAGATTGATAATACTATGGTGATTGCGAGTTTCCTCGGGCCTAATTGTTCAGGGTTTTACAGTTCCGATGCCATCTTTGTCGACATGACAGCCTACCAATGCAAGGATGACATATTGAGAAAATGGTTTCCAAATCCGACATGTCAACAAGATGTTCATACTTCCACCCCATCTGGAAGCAAGGCGAAGAAAAAGACAAAGGGCAAGAACAAGAAAAGCAAGAAGAAAGGAGGCCGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

3032

Amino Acids

345.93

Weight (kDa)

7.09

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 93 - 222 3e-59 Domain of unknown function (DUF6469)
AAA_11 PF13086 285 - 402 5.5e-14 AAA domain
DUF6469 PF20073 551 - 679 7.5e-62 Domain of unknown function (DUF6469)
AAA_11 PF13086 717 - 1090 3.2e-34 AAA domain
AAA_19 PF13245 737 - 1085 2.6e-06 AAA domain
AAA_12 PF13087 1098 - 1294 2.4e-55 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 2675, 3494, 3767, 5201
AarI CACCTGC 1 cut(s) 5905
Acc16I TGCGCA 1 cut(s) 6883
Acc36I ACCTGC 2 cut(s) 5905, 7088
AccB7I CCANNNNNTGG 4 cut(s) 1223, 2519, 4170, 8545
AccBSI CCGCTC 1 cut(s) 6659
AccI GTMKAC 6 cut(s) 1430, 1500, 2726, 2796, 7512, 8937
AccII CGCG 1 cut(s) 8583
AclI AACGTT 1 cut(s) 7254
AclWI GGATC 7 cut(s) 99, 3406, 3777, 4488, 6514, 8159, 8722
AcoI YGGCCR 4 cut(s) 486, 1860, 5158, 6402
AcyI GRCGYC 1 cut(s) 7395
AdeI CACNNNGTG 1 cut(s) 6411
AfeI AGCGCT 1 cut(s) 4060
AflIII ACRYGT 4 cut(s) 651, 2022, 4918, 8996
AhdI GACNNNNNGTC 2 cut(s) 4887, 8128
AjuI GAANNNNNNNTTGG 4 cut(s) 5019, 5051, 5621, 5653
AloI GAACNNNNNNTCC 4 cut(s) 1289, 1321, 6484, 6516
AlwI GGATC 7 cut(s) 99, 3406, 3777, 4488, 6514, 8159, 8722
AlwNI CAGNNNCTG 2 cut(s) 4850, 6569
Ama87I CYCGRG 5 cut(s) 234, 1608, 6363, 8168, 8891
Aor51HI AGCGCT 1 cut(s) 4060
ArsI GACNNNNNNTTYG 4 cut(s) 4433, 4465, 7211, 7243
AseI ATTAAT 1 cut(s) 6789
AspLEI GCGC 7 cut(s) 4061, 4141, 4869, 6132, 6884, 7274, 8418
AsuC2I CCSGG 4 cut(s) 402, 1776, 5366, 5396
AvaI CYCGRG 5 cut(s) 234, 1608, 6363, 8168, 8891
BaeGI GKGCMC 1 cut(s) 7885
BaeI ACNNNNGTAYC 4 cut(s) 5744, 5777, 7576, 7609
BalI TGGCCA 2 cut(s) 5160, 6404
BanII GRGCYC 2 cut(s) 8199, 8851
BarI GAAGNNNNNNTAC 2 cut(s) 5493, 5525
BauI CACGAG 1 cut(s) 8713
BbsI GAAGAC 2 cut(s) 3972, 6249
BceAI ACGGC 4 cut(s) 905, 1170, 1426, 2466
BcgI CGANNNNNNTGC 2 cut(s) 3084, 3118
BclI TGATCA 2 cut(s) 4012, 8160
BcnI CCSGG 4 cut(s) 402, 1776, 5366, 5396
BfoI RGCGCY 3 cut(s) 4062, 4142, 8419
BfuAI ACCTGC 2 cut(s) 5905, 7088
BglII AGATCT 4 cut(s) 4308, 4648, 7450, 7693
BlpI GCTNAGC 1 cut(s) 1563
BmeRI GACNNNNNGTC 2 cut(s) 4887, 8128
BmeT110I CYCGRG 5 cut(s) 234, 1608, 6363, 8168, 8891
BmrI ACTGGG 7 cut(s) 879, 2175, 3531, 4465, 4740, 6448, 7998
BmuI ACTGGG 7 cut(s) 879, 2175, 3531, 4465, 4740, 6448, 7998
BoxI GACNNNNGTC 1 cut(s) 4118
BpiI GAAGAC 2 cut(s) 3972, 6249
BpmI CTGGAG 9 cut(s) 92, 764, 1065, 2361, 4349, 5811, 7563, 8383, 8865
Bpu10I CCTNAGC 4 cut(s) 794, 4893, 5329, 6825
Bpu1102I GCTNAGC 1 cut(s) 1563
BpuMI CCSGG 4 cut(s) 402, 1776, 5366, 5396
Bsa29I ATCGAT 1 cut(s) 6518
BsaBI GATNNNNATC 1 cut(s) 7746
BsaHI GRCGYC 1 cut(s) 7395
BsaI GGTCTC 2 cut(s) 4168, 7738
BsaWI WCCGGW 1 cut(s) 2826
BsaXI ACNNNNNCTCC 2 cut(s) 7440, 7470
Bse3DI GCAATG 4 cut(s) 3132, 3477, 3901, 8163
Bse8I GATNNNNATC 1 cut(s) 7746
BseCI ATCGAT 1 cut(s) 6518
BseJI GATNNNNATC 1 cut(s) 7746
BseMI GCAATG 4 cut(s) 3132, 3477, 3901, 8163
BseMII CTCAG 8 cut(s) 1577, 3637, 4514, 5374, 6744, 7266, 7781, 8184
BseRI GAGGAG 3 cut(s) 5015, 6365, 8815
BseSI GKGCMC 1 cut(s) 7885
BseYI CCCAGC 3 cut(s) 309, 7050, 8740
BsgI GTGCAG 5 cut(s) 1176, 2472, 3147, 5928, 7897
Bsh1236I CGCG 1 cut(s) 8583
Bsh1285I CGRYCG 1 cut(s) 4724
BshVI ATCGAT 1 cut(s) 6518
BsiEI CGRYCG 1 cut(s) 4724
BsiHKCI CYCGRG 5 cut(s) 234, 1608, 6363, 8168, 8891
BsiSI CCGG 7 cut(s) 402, 1776, 2827, 5365, 5395, 6462, 9091
BsiWI CGTACG 1 cut(s) 3778
BslFI GGGAC 7 cut(s) 52, 485, 1856, 4328, 4731, 6977, 7655
BsmFI GGGAC 7 cut(s) 52, 485, 1856, 4328, 4731, 6977, 7655
BsmI GAATGC 8 cut(s) 247, 901, 1361, 1621, 2197, 2657, 3366, 7462
Bso31I GGTCTC 2 cut(s) 4168, 7738
BsoBI CYCGRG 5 cut(s) 234, 1608, 6363, 8168, 8891
Bsp1407I TGTACA 2 cut(s) 3591, 4251
Bsp1720I GCTNAGC 1 cut(s) 1563
Bsp19I CCATGG 5 cut(s) 4420, 7182, 8237, 8520, 8771
Bsp68I TCGCGA 1 cut(s) 8583
BspCNI CTCAG 8 cut(s) 1576, 3636, 4513, 5373, 6743, 7267, 7780, 8185
BspDI ATCGAT 1 cut(s) 6518
BspFNI CGCG 1 cut(s) 8583
BspHI TCATGA 5 cut(s) 1308, 5038, 5865, 6382, 6918
BspMAI CTGCAG 3 cut(s) 718, 4846, 6703
BspMI ACCTGC 2 cut(s) 5905, 7088
BspPI GGATC 7 cut(s) 99, 3406, 3777, 4488, 6514, 8159, 8722
BspQI GCTCTTC 1 cut(s) 4219
BspTNI GGTCTC 2 cut(s) 4168, 7738
BsrBI CCGCTC 1 cut(s) 6659
BsrDI GCAATG 4 cut(s) 3132, 3477, 3901, 8163
BsrGI TGTACA 2 cut(s) 3591, 4251
BssNI GRCGYC 1 cut(s) 7395
BssSI CACGAG 1 cut(s) 8713
Bst2BI CACGAG 1 cut(s) 8713
Bst6I CTCTTC 8 cut(s) 1357, 2653, 3505, 3519, 3747, 4219, 4668, 6501
BstACI GRCGYC 1 cut(s) 7395
BstAPI GCANNNNNTGC 3 cut(s) 281, 1655, 6569
BstAUI TGTACA 2 cut(s) 3591, 4251
BstDSI CCRYGG 5 cut(s) 4420, 7182, 8237, 8520, 8771
BstEII GGTNACC 1 cut(s) 4449
BstENI CCTNNNNNAGG 1 cut(s) 7091
BstFNI CGCG 1 cut(s) 8583
BstH2I RGCGCY 3 cut(s) 4062, 4142, 8419
BstHHI GCGC 7 cut(s) 4061, 4141, 4869, 6132, 6884, 7274, 8418
BstMCI CGRYCG 1 cut(s) 4724
BstMWI GCNNNNNNNGC 9 cut(s) 281, 881, 1655, 2177, 3290, 5342, 6298, 6569, 7046
BstNSI RCATGY 9 cut(s) 655, 2026, 3221, 4922, 4947, 5349, 5978, 6809, 9000
BstPAI GACNNNNGTC 1 cut(s) 4118
BstPI GGTNACC 1 cut(s) 4449
BstSLI GKGCMC 1 cut(s) 7885
BstUI CGCG 1 cut(s) 8583
BstV2I GAAGAC 2 cut(s) 3972, 6249
BstX2I RGATCY 6 cut(s) 91, 4308, 4480, 4648, 7450, 7693
BstXI CCANNNNNNTGG 4 cut(s) 317, 4446, 6334, 6354
BstYI RGATCY 6 cut(s) 91, 4308, 4480, 4648, 7450, 7693
Bsu15I ATCGAT 1 cut(s) 6518
BsuTUI ATCGAT 1 cut(s) 6518
BtgI CCRYGG 5 cut(s) 4420, 7182, 8237, 8520, 8771
BtgZI GCGATG 1 cut(s) 7030
BtsI GCAGTG 4 cut(s) 882, 2178, 3090, 7118
BtuMI TCGCGA 1 cut(s) 8583
BveI ACCTGC 2 cut(s) 5905, 7088
CaiI CAGNNNCTG 2 cut(s) 4850, 6569
CciI TCATGA 5 cut(s) 1308, 5038, 5865, 6382, 6918
CfoI GCGC 7 cut(s) 4061, 4141, 4869, 6132, 6884, 7274, 8418
ClaI ATCGAT 1 cut(s) 6518
CseI GACGC 2 cut(s) 824, 7403
CsiI ACCWGGT 1 cut(s) 8389
CspCI CAANNNNNGTGG 2 cut(s) 8649, 8684
DraI TTTAAA 4 cut(s) 3345, 4237, 4765, 5793
DraIII CACNNNGTG 1 cut(s) 6411
DriI GACNNNNNGTC 2 cut(s) 4887, 8128
EaeI YGGCCR 4 cut(s) 486, 1860, 5158, 6402
Eam1104I CTCTTC 8 cut(s) 1357, 2653, 3505, 3519, 3747, 4219, 4668, 6501
Eam1105I GACNNNNNGTC 2 cut(s) 4887, 8128
EarI CTCTTC 8 cut(s) 1357, 2653, 3505, 3519, 3747, 4219, 4668, 6501
EciI GGCGGA 1 cut(s) 4965
Ecl136II GAGCTC 2 cut(s) 8197, 8849
Eco147I AGGCCT 4 cut(s) 2530, 5673, 7115, 8246
Eco24I GRGCYC 2 cut(s) 8199, 8851
Eco31I GGTCTC 2 cut(s) 4168, 7738
Eco32I GATATC 1 cut(s) 4336
Eco47III AGCGCT 1 cut(s) 4060
Eco53kI GAGCTC 2 cut(s) 8197, 8849
Eco88I CYCGRG 5 cut(s) 234, 1608, 6363, 8168, 8891
Eco91I GGTNACC 1 cut(s) 4449
EcoICRI GAGCTC 2 cut(s) 8197, 8849
EcoNI CCTNNNNNAGG 1 cut(s) 7091
EcoO109I RGGNCCY 3 cut(s) 938, 2234, 6007
EcoO65I GGTNACC 1 cut(s) 4449
EcoRI GAATTC 3 cut(s) 4549, 7852, 8029
EcoRV GATATC 1 cut(s) 4336
EcoT22I ATGCAT 2 cut(s) 3366, 5347
EcoT38I GRGCYC 2 cut(s) 8199, 8851
FaqI GGGAC 7 cut(s) 52, 485, 1856, 4328, 4731, 6977, 7655
FauI CCCGC 2 cut(s) 6673, 6954
FauNDI CATATG 2 cut(s) 316, 1690
FbaI TGATCA 2 cut(s) 4012, 8160
FblI GTMKAC 6 cut(s) 1430, 1500, 2726, 2796, 7512, 8937
FriOI GRGCYC 2 cut(s) 8199, 8851
FspI TGCGCA 1 cut(s) 6883
GlaI GCGC 7 cut(s) 4060, 4140, 4868, 6131, 6883, 7273, 8417
GsaI CCCAGC 3 cut(s) 313, 7054, 8744
GsuI CTGGAG 9 cut(s) 92, 764, 1065, 2361, 4349, 5811, 7563, 8383, 8865
HaeII RGCGCY 3 cut(s) 4062, 4142, 8419
HapII CCGG 7 cut(s) 402, 1776, 2827, 5365, 5395, 6462, 9091
HgaI GACGC 2 cut(s) 824, 7403
HhaI GCGC 7 cut(s) 4061, 4141, 4869, 6132, 6884, 7274, 8418
Hin1I GRCGYC 1 cut(s) 7395
Hin6I GCGC 7 cut(s) 4059, 4139, 4867, 6130, 6882, 7272, 8416
HinP1I GCGC 7 cut(s) 4059, 4139, 4867, 6130, 6882, 7272, 8416
HincII GTYRAC 5 cut(s) 3014, 3186, 5697, 8938, 9002
HindII GTYRAC 5 cut(s) 3014, 3186, 5697, 8938, 9002
HindIII AAGCTT 8 cut(s) 2880, 3298, 3698, 4157, 5276, 6936, 7820, 8219
HpaII CCGG 7 cut(s) 402, 1776, 2827, 5365, 5395, 6462, 9091
Hpy99I CGWCG 4 cut(s) 3945, 5520, 5949, 8126
HpyCH4IV ACGT 3 cut(s) 4293, 7254, 8515
HpyF10VI GCNNNNNNNGC 9 cut(s) 281, 881, 1655, 2177, 3290, 5342, 6298, 6569, 7046
HpySE526I ACGT 3 cut(s) 4293, 7254, 8515
Hsp92I GRCGYC 1 cut(s) 7395
HspAI GCGC 7 cut(s) 4059, 4139, 4867, 6130, 6882, 7272, 8416
Ksp22I TGATCA 2 cut(s) 4012, 8160
LguI GCTCTTC 1 cut(s) 4219
MabI ACCWGGT 1 cut(s) 8389
MaeII ACGT 3 cut(s) 4293, 7254, 8515
MbiI CCGCTC 1 cut(s) 6659
MflI RGATCY 6 cut(s) 91, 4308, 4480, 4648, 7450, 7693
MlsI TGGCCA 2 cut(s) 5160, 6404
MluNI TGGCCA 2 cut(s) 5160, 6404
Mox20I TGGCCA 2 cut(s) 5160, 6404
Mph1103I ATGCAT 2 cut(s) 3366, 5347
MscI TGGCCA 2 cut(s) 5160, 6404
MslI CAYNNNNRTG 7 cut(s) 906, 1460, 2202, 2756, 2907, 6332, 6393
Msp20I TGGCCA 2 cut(s) 5160, 6404
MspA1I CMGCKG 1 cut(s) 7264
MspI CCGG 7 cut(s) 402, 1776, 2827, 5365, 5395, 6462, 9091
Mva1269I GAATGC 8 cut(s) 247, 901, 1361, 1621, 2197, 2657, 3366, 7462
MvnI CGCG 1 cut(s) 8583
MwoI GCNNNNNNNGC 9 cut(s) 281, 881, 1655, 2177, 3290, 5342, 6298, 6569, 7046
NciI CCSGG 4 cut(s) 402, 1776, 5366, 5396
NcoI CCATGG 5 cut(s) 4420, 7182, 8237, 8520, 8771
NdeI CATATG 2 cut(s) 316, 1690
NmuCI GTSAC 7 cut(s) 2266, 4449, 4517, 4879, 6428, 8524, 8747
NruI TCGCGA 1 cut(s) 8583
NsbI TGCGCA 1 cut(s) 6883
NsiI ATGCAT 2 cut(s) 3366, 5347
NspI RCATGY 9 cut(s) 655, 2026, 3221, 4922, 4947, 5349, 5978, 6809, 9000
PaeI GCATGC 3 cut(s) 3221, 5978, 6809
PagI TCATGA 5 cut(s) 1308, 5038, 5865, 6382, 6918
PaqCI CACCTGC 1 cut(s) 5905
PceI AGGCCT 4 cut(s) 2530, 5673, 7115, 8246
PciI ACATGT 4 cut(s) 651, 2022, 4918, 8996
PciSI GCTCTTC 1 cut(s) 4219
PctI GAATGC 8 cut(s) 247, 901, 1361, 1621, 2197, 2657, 3366, 7462
Pfl23II CGTACG 1 cut(s) 3778
PflFI GACNNNGTC 3 cut(s) 834, 3537, 3920
PflMI CCANNNNNTGG 4 cut(s) 1223, 2519, 4170, 8545
PfoI TCCNGGA 2 cut(s) 3414, 3463
Ple19I CGATCG 1 cut(s) 4724
PpuMI RGGWCCY 2 cut(s) 938, 2234
PscI ACATGT 4 cut(s) 651, 2022, 4918, 8996
PshAI GACNNNNGTC 1 cut(s) 4118
PshBI ATTAAT 1 cut(s) 6789
PsiI TTATAA 4 cut(s) 2675, 3494, 3767, 5201
Psp124BI GAGCTC 2 cut(s) 8199, 8851
Psp1406I AACGTT 1 cut(s) 7254
Psp5II RGGWCCY 2 cut(s) 938, 2234
PspEI GGTNACC 1 cut(s) 4449
PspFI CCCAGC 3 cut(s) 309, 7050, 8740
PspLI CGTACG 1 cut(s) 3778
PspPPI RGGWCCY 2 cut(s) 938, 2234
PsrI GAACNNNNNNTAC 4 cut(s) 4274, 4306, 6090, 6122
PstI CTGCAG 3 cut(s) 718, 4846, 6703
PstNI CAGNNNCTG 2 cut(s) 4850, 6569
PsuI RGATCY 6 cut(s) 91, 4308, 4480, 4648, 7450, 7693
PsyI GACNNNGTC 3 cut(s) 834, 3537, 3920
PvuI CGATCG 1 cut(s) 4724
PvuII CAGCTG 1 cut(s) 7264
RruI TCGCGA 1 cut(s) 8583
RseI CAYNNNNRTG 7 cut(s) 906, 1460, 2202, 2756, 2907, 6332, 6393
SacI GAGCTC 2 cut(s) 8199, 8851
SalI GTCGAC 1 cut(s) 8936
SapI GCTCTTC 1 cut(s) 4219
SexAI ACCWGGT 1 cut(s) 8389
SmiMI CAYNNNNRTG 7 cut(s) 906, 1460, 2202, 2756, 2907, 6332, 6393
SphI GCATGC 3 cut(s) 3221, 5978, 6809
SseBI AGGCCT 4 cut(s) 2530, 5673, 7115, 8246
SspI AATATT 5 cut(s) 670, 3031, 3084, 6543, 6954
SstI GAGCTC 2 cut(s) 8199, 8851
StuI AGGCCT 4 cut(s) 2530, 5673, 7115, 8246
TaiI ACGT 3 cut(s) 4296, 7257, 8518
TaqII GACCGA 1 cut(s) 192
TatI WGTACW 4 cut(s) 1469, 2765, 3591, 4251
TauI GCSGC 4 cut(s) 706, 713, 6662, 7040
TseFI GTSAC 7 cut(s) 2266, 4449, 4517, 4879, 6428, 8524, 8747
Tsp45I GTSAC 7 cut(s) 2266, 4449, 4517, 4879, 6428, 8524, 8747
TspGWI ACGGA 5 cut(s) 611, 1982, 3067, 5699, 7786
Tth111I GACNNNGTC 3 cut(s) 834, 3537, 3920
Van91I CCANNNNNTGG 4 cut(s) 1223, 2519, 4170, 8545
VspI ATTAAT 1 cut(s) 6789
XagI CCTNNNNNAGG 1 cut(s) 7091
XbaI TCTAGA 2 cut(s) 4429, 7481
XceI RCATGY 9 cut(s) 655, 2026, 3221, 4922, 4947, 5349, 5978, 6809, 9000
XcmI CCANNNNNNNNNTGG 2 cut(s) 1224, 2520
XmiI GTMKAC 6 cut(s) 1430, 1500, 2726, 2796, 7512, 8937
Zsp2I ATGCAT 2 cut(s) 3366, 5347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.