Rorug04G0366200

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000223
Physical Location & Seq
Reverse (-)
53774789 .. 53775261
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0366200.1

Sequence Viewer

Length: 453 bp
ATGGCAGAATCTTGGGTTTCTTCATCAATCCAAGAAAACCCAAATGAGGAGGAAACAAATGAGTCATTGGAATCAATCTTTTCTTCTTCTACGTTCAACCGACAAGTGGAGCGGGAAGAAGGAGAATTGCCCAAGCTAAGGAGCTTATCGTCGAGCGGCAGCAGGAAGAAGAAGAAGAAGAATCAGGTTTTGCTTGAAGGGTATGTTGATTCGGCTGATGAGGACGATCTGTCGAGGACCAAGAGCTTAACGGATGAGGATCTCGATGAGCTCAAAGGGTGCTTGGATTTGGGATTTGGGTTCAGCTATGAAGAAATTCCCGAGCTCTGTAACACCTTGCTTGCTCTTGAGCTTTGTTACTCTATGAGCCAGAGGTTCATGGACAAGTCGCCGGAGACCTCTCCTGCTGCACTGGATTCCTGCTCTTCTGTGTCCAGTCCGATTGCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

150

Amino Acids

16.67

Weight (kDa)

4.33

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 83 - 137 8.2e-23 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 112, 156
AciI CCGC 2 cut(s) 112, 156
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 315
AfiI CCNNNNNNNGG 3 cut(s) 46, 106, 138
AgsI TTSAA 2 cut(s) 97, 197
AhdI GACNNNNNGTC 1 cut(s) 229
AluBI AGCT 7 cut(s) 136, 144, 246, 271, 306, 325, 352
AluI AGCT 7 cut(s) 136, 144, 246, 271, 306, 325, 352
Alw21I GWGCWC 2 cut(s) 273, 327
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 159, 407
ApoI RAATTY 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 237
BanII GRGCYC 2 cut(s) 273, 327
Bbv12I GWGCWC 2 cut(s) 273, 327
BbvI GCAGC 2 cut(s) 171, 394
BcoDI GTCTC 1 cut(s) 389
BisI GCNGC 3 cut(s) 157, 160, 408
BlsI GCNGC 3 cut(s) 158, 161, 409
Bme18I GGWCC 1 cut(s) 237
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 106, 138
Bse1I ACTGG 2 cut(s) 417, 435
Bse8I GATNNNNATC 1 cut(s) 258
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 3 cut(s) 46, 106, 138
BseNI ACTGG 2 cut(s) 417, 435
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 171, 394
BsgI GTGCAG 1 cut(s) 393
BsiHKAI GWGCWC 2 cut(s) 273, 327
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 392
BslI CCNNNNNNNGG 3 cut(s) 46, 106, 138
BsmAI GTCTC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 273, 327
Bsp143I GATC 2 cut(s) 226, 259
BspACI CCGC 2 cut(s) 112, 156
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 389
BsrBI CCGCTC 2 cut(s) 112, 156
BsrI ACTGG 2 cut(s) 417, 435
BssMI GATC 2 cut(s) 226, 259
Bst6I CTCTTC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 229, 262
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 2 cut(s) 226, 259
BstV1I GCAGC 2 cut(s) 171, 394
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 237
CviAII CATG 1 cut(s) 379
CviJI RGCY 9 cut(s) 136, 144, 215, 246, 271, 306, 325, 352, 369
CviKI_1 RGCY 9 cut(s) 136, 144, 215, 246, 271, 306, 325, 352, 369
DdeI CTNAG 1 cut(s) 137
DpnI GATC 2 cut(s) 228, 261
DpnII GATC 2 cut(s) 226, 259
DriI GACNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 430
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 430
Ecl136II GAGCTC 2 cut(s) 271, 325
Eco24I GRGCYC 2 cut(s) 273, 327
Eco31I GGTCTC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 237
Eco53kI GAGCTC 2 cut(s) 271, 325
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 2 cut(s) 271, 325
EcoT38I GRGCYC 2 cut(s) 273, 327
FaeI CATG 1 cut(s) 382
FaiI YATR 4 cut(s) 204, 309, 365, 380
FatI CATG 1 cut(s) 378
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 157, 160, 408
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 2 cut(s) 273, 327
Fsp4HI GCNGC 3 cut(s) 157, 160, 408
GluI GCNGC 3 cut(s) 157, 160, 408
HapII CCGG 1 cut(s) 392
Hin1II CATG 1 cut(s) 382
HinfI GANTC 6 cut(s) 8, 62, 71, 181, 209, 416
HpaII CCGG 1 cut(s) 392
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 3 cut(s) 263, 320, 347
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 113, 191
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 410
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 2 cut(s) 226, 259
LguI GCTCTTC 1 cut(s) 430
LmnI GCTCC 2 cut(s) 109, 141
LpnPI CCDG 8 cut(s) 148, 170, 383, 398, 405, 417, 433, 448
Lsp1109I GCAGC 2 cut(s) 171, 394
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 329, 356
MalI GATC 2 cut(s) 228, 261
MbiI CCGCTC 2 cut(s) 112, 156
MboI GATC 2 cut(s) 226, 259
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 2 cut(s) 273, 327
MluCI AATT 3 cut(s) 125, 315, 448
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 7 cut(s) 40, 43, 214, 228, 250, 366, 409
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 1 cut(s) 248
MspI CCGG 1 cut(s) 392
MunI CAATTG 1 cut(s) 448
NdeII GATC 2 cut(s) 226, 259
NlaIII CATG 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 5 cut(s) 8, 71, 181, 209, 416
PkrI GCNGC 3 cut(s) 158, 161, 409
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp124BI GAGCTC 2 cut(s) 273, 327
PspPI GGNCC 1 cut(s) 237
PsuI RGATCY 1 cut(s) 259
SacI GAGCTC 2 cut(s) 273, 327
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 3 cut(s) 157, 160, 408
Sau3AI GATC 2 cut(s) 226, 259
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 2 cut(s) 273, 327
SinI GGWCC 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 3 cut(s) 125, 315, 448
SsiI CCGC 2 cut(s) 112, 156
SstI GAGCTC 2 cut(s) 273, 327
TaiI ACGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 152, 233, 264
TasI AATT 3 cut(s) 125, 315, 448
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 5 cut(s) 8, 71, 181, 209, 416
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 417
TseI GCWGC 2 cut(s) 159, 407
TspDTI ATGAA 3 cut(s) 12, 324, 367
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.