TPR and ankyrin repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF6469 | PF20073 | 69 - 214 | 3e-52 | Domain of unknown function (DUF6469) |
| AAA_11 | PF13086 | 254 - 627 | 4.2e-32 | AAA domain |
| AAA_19 | PF13245 | 276 - 623 | 6e-07 | AAA domain |
| AAA_12 | PF13087 | 635 - 831 | 2.3e-59 | AAA domain |
| UvrD-helicase | PF00580 | 1338 - 1427 | 1e-06 | UvrD/REP helicase N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 7038, 7470 |
| AarI | CACCTGC | 2 cut(s) | 6558, 6919 |
| Acc36I | ACCTGC | 2 cut(s) | 6558, 6919 |
| AccB1I | GGYRCC | 1 cut(s) | 7751 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2026, 3286 |
| AccBSI | CCGCTC | 1 cut(s) | 7491 |
| AccI | GTMKAC | 2 cut(s) | 5, 827 |
| AccIII | TCCGGA | 1 cut(s) | 4556 |
| AcoI | YGGCCR | 5 cut(s) | 2589, 3056, 3961, 5127, 7626 |
| AdeI | CACNNNGTG | 1 cut(s) | 5136 |
| AfeI | AGCGCT | 1 cut(s) | 6094 |
| AflII | CTTAAG | 5 cut(s) | 2723, 5249, 6628, 7198, 7535 |
| AflIII | ACRYGT | 2 cut(s) | 627, 3523 |
| AhlI | ACTAGT | 1 cut(s) | 2810 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1884, 1916, 4325, 4357, 5682, 5714 |
| AleI | CACNNNNGTG | 2 cut(s) | 6033, 6660 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 7567, 7599 |
| Alw21I | GWGCWC | 8 cut(s) | 205, 557, 668, 1931, 4669, 4974, 5566, 7524 |
| Alw44I | GTGCAC | 2 cut(s) | 664, 5562 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 953, 2026, 7607 |
| Ama87I | CYCGRG | 2 cut(s) | 3968, 6857 |
| Aor13HI | TCCGGA | 1 cut(s) | 4556 |
| Aor51HI | AGCGCT | 1 cut(s) | 6094 |
| ApaLI | GTGCAC | 2 cut(s) | 664, 5562 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 161, 193, 5891, 5923, 6556, 6588, 6980, 7012 |
| AseI | ATTAAT | 1 cut(s) | 2106 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 2711, 3368, 3562, 4401 |
| AspLEI | GCGC | 2 cut(s) | 6095, 7104 |
| AsuC2I | CCSGG | 1 cut(s) | 7780 |
| AsuII | TTCGAA | 1 cut(s) | 1113 |
| AvaI | CYCGRG | 2 cut(s) | 3968, 6857 |
| AvaII | GGWCC | 7 cut(s) | 132, 848, 2090, 2533, 4651, 5175, 7575 |
| AxyI | CCTNAGG | 1 cut(s) | 5073 |
| BaeGI | GKGCMC | 3 cut(s) | 668, 934, 5566 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 399, 432 |
| BalI | TGGCCA | 4 cut(s) | 2591, 3058, 5129, 7628 |
| BanI | GGYRCC | 1 cut(s) | 7751 |
| BanII | GRGCYC | 3 cut(s) | 1931, 2464, 4974 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1135, 1167, 2262, 2294, 4527, 4559 |
| BauI | CACGAG | 2 cut(s) | 162, 5088 |
| BbsI | GAAGAC | 6 cut(s) | 57, 2583, 3350, 4248, 7751, 7979 |
| Bbv12I | GWGCWC | 8 cut(s) | 205, 557, 668, 1931, 4669, 4974, 5566, 7524 |
| BceAI | ACGGC | 3 cut(s) | 1817, 4284, 7441 |
| BciVI | GTATCC | 1 cut(s) | 19 |
| BclI | TGATCA | 2 cut(s) | 594, 4153 |
| BcnI | CCSGG | 1 cut(s) | 7780 |
| BcuI | ACTAGT | 1 cut(s) | 2810 |
| BfmI | CTRYAG | 4 cut(s) | 2192, 4494, 5277, 7794 |
| BfoI | RGCGCY | 2 cut(s) | 6096, 7105 |
| BfrI | CTTAAG | 5 cut(s) | 2723, 5249, 6628, 7198, 7535 |
| BfuAI | ACCTGC | 2 cut(s) | 6558, 6919 |
| BfuI | GTATCC | 1 cut(s) | 19 |
| BglII | AGATCT | 3 cut(s) | 3088, 4189, 7921 |
| BlpI | GCTNAGC | 2 cut(s) | 1925, 3435 |
| Bme18I | GGWCC | 7 cut(s) | 132, 848, 2090, 2533, 4651, 5175, 7575 |
| BmeT110I | CYCGRG | 2 cut(s) | 3968, 6857 |
| BmrI | ACTGGG | 1 cut(s) | 786 |
| BmuI | ACTGGG | 1 cut(s) | 786 |
| BpiI | GAAGAC | 6 cut(s) | 57, 2583, 3350, 4248, 7751, 7979 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1496, 1528 |
| BpmI | CTGGAG | 1 cut(s) | 7069 |
| Bpu10I | CCTNAGC | 3 cut(s) | 681, 3498, 5394 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1925, 3435 |
| Bpu14I | TTCGAA | 1 cut(s) | 1113 |
| BpuEI | CTTGAG | 7 cut(s) | 1193, 2250, 2854, 3047, 3766, 5573, 5732 |
| BpuMI | CCSGG | 1 cut(s) | 7780 |
| Bsa29I | ATCGAT | 1 cut(s) | 1764 |
| BsaAI | YACGTR | 1 cut(s) | 1601 |
| BsaBI | GATNNNNATC | 1 cut(s) | 6078 |
| BsaI | GGTCTC | 5 cut(s) | 1271, 2779, 6427, 6598, 7862 |
| BsaWI | WCCGGW | 5 cut(s) | 2774, 3209, 4540, 4556, 7958 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1778, 1808, 6104, 6134 |
| Bse118I | RCCGGY | 1 cut(s) | 1126 |
| Bse21I | CCTNAGG | 1 cut(s) | 5073 |
| Bse8I | GATNNNNATC | 1 cut(s) | 6078 |
| BseAI | TCCGGA | 1 cut(s) | 4556 |
| BseCI | ATCGAT | 1 cut(s) | 1764 |
| BseJI | GATNNNNATC | 1 cut(s) | 6078 |
| BseRI | GAGGAG | 6 cut(s) | 2141, 3620, 5090, 5900, 7751, 7910 |
| BseSI | GKGCMC | 3 cut(s) | 668, 934, 5566 |
| BseYI | CCCAGC | 2 cut(s) | 5339, 7426 |
| BsgI | GTGCAG | 3 cut(s) | 194, 1758, 2259 |
| Bsh1285I | CGRYCG | 2 cut(s) | 16, 6678 |
| BshNI | GGYRCC | 1 cut(s) | 7751 |
| BshVI | ATCGAT | 1 cut(s) | 1764 |
| BsiEI | CGRYCG | 2 cut(s) | 16, 6678 |
| BsiHKAI | GWGCWC | 8 cut(s) | 205, 557, 668, 1931, 4669, 4974, 5566, 7524 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3968, 6857 |
| BsiSI | CCGG | 8 cut(s) | 560, 1127, 2775, 3210, 4541, 4557, 7779, 7959 |
| BsiWI | CGTACG | 1 cut(s) | 4424 |
| BslFI | GGGAC | 6 cut(s) | 871, 1065, 2936, 6874, 7588, 7889 |
| BsmBI | CGTCTC | 1 cut(s) | 1570 |
| BsmFI | GGGAC | 6 cut(s) | 871, 1065, 2936, 6874, 7588, 7889 |
| BsmI | GAATGC | 7 cut(s) | 718, 1121, 1977, 4730, 5217, 6019, 6547 |
| Bso31I | GGTCTC | 5 cut(s) | 1271, 2779, 6427, 6598, 7862 |
| BsoBI | CYCGRG | 2 cut(s) | 3968, 6857 |
| Bsp119I | TTCGAA | 1 cut(s) | 1113 |
| Bsp13I | TCCGGA | 1 cut(s) | 4556 |
| Bsp1407I | TGTACA | 5 cut(s) | 72, 1566, 2202, 4758, 5014 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1925, 3435 |
| Bsp19I | CCATGG | 2 cut(s) | 6177, 6923 |
| BspDI | ATCGAT | 1 cut(s) | 1764 |
| BspEI | TCCGGA | 1 cut(s) | 4556 |
| BspHI | TCATGA | 3 cut(s) | 3186, 5107, 6637 |
| BspMAI | CTGCAG | 1 cut(s) | 2196 |
| BspMI | ACCTGC | 2 cut(s) | 6558, 6919 |
| BspQI | GCTCTTC | 3 cut(s) | 1156, 1497, 4962 |
| BspT104I | TTCGAA | 1 cut(s) | 1113 |
| BspT107I | GGYRCC | 1 cut(s) | 7751 |
| BspTI | CTTAAG | 5 cut(s) | 2723, 5249, 6628, 7198, 7535 |
| BspTNI | GGTCTC | 5 cut(s) | 1271, 2779, 6427, 6598, 7862 |
| BsrBI | CCGCTC | 1 cut(s) | 7491 |
| BsrFI | RCCGGY | 1 cut(s) | 1126 |
| BsrGI | TGTACA | 5 cut(s) | 72, 1566, 2202, 4758, 5014 |
| BssAI | RCCGGY | 1 cut(s) | 1126 |
| BssSI | CACGAG | 2 cut(s) | 162, 5088 |
| BssT1I | CCWWGG | 4 cut(s) | 2592, 6177, 6923, 7180 |
| Bst2BI | CACGAG | 2 cut(s) | 162, 5088 |
| Bst6I | CTCTTC | 7 cut(s) | 1156, 1497, 1568, 1611, 2116, 2358, 4962 |
| BstAFI | CTTAAG | 5 cut(s) | 2723, 5249, 6628, 7198, 7535 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 209 |
| BstAUI | TGTACA | 5 cut(s) | 72, 1566, 2202, 4758, 5014 |
| BstBAI | YACGTR | 1 cut(s) | 1601 |
| BstBI | TTCGAA | 1 cut(s) | 1113 |
| BstDSI | CCRYGG | 2 cut(s) | 6177, 6923 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 858, 3808, 5045, 5771 |
| BstH2I | RGCGCY | 2 cut(s) | 6096, 7105 |
| BstHHI | GCGC | 2 cut(s) | 6095, 7104 |
| BstMCI | CGRYCG | 2 cut(s) | 16, 6678 |
| BstNSI | RCATGY | 6 cut(s) | 631, 1832, 1963, 3527, 3552, 4433 |
| BstSFI | CTRYAG | 4 cut(s) | 2192, 4494, 5277, 7794 |
| BstSLI | GKGCMC | 3 cut(s) | 668, 934, 5566 |
| BstSNI | TACGTA | 1 cut(s) | 1601 |
| BstV2I | GAAGAC | 6 cut(s) | 57, 2583, 3350, 4248, 7751, 7979 |
| BstX2I | RGATCY | 8 cut(s) | 340, 2022, 3088, 3256, 4189, 5594, 7700, 7921 |
| BstYI | RGATCY | 8 cut(s) | 340, 2022, 3088, 3256, 4189, 5594, 7700, 7921 |
| Bsu15I | ATCGAT | 1 cut(s) | 1764 |
| Bsu36I | CCTNAGG | 1 cut(s) | 5073 |
| BsuI | GTATCC | 1 cut(s) | 19 |
| BsuTUI | ATCGAT | 1 cut(s) | 1764 |
| BtgI | CCRYGG | 2 cut(s) | 6177, 6923 |
| BtgZI | GCGATG | 2 cut(s) | 4761, 7788 |
| BtsI | GCAGTG | 3 cut(s) | 1701, 1805, 2467 |
| BveI | ACCTGC | 2 cut(s) | 6558, 6919 |
| CaiI | CAGNNNCTG | 3 cut(s) | 953, 2026, 7607 |
| CciI | TCATGA | 3 cut(s) | 3186, 5107, 6637 |
| CfoI | GCGC | 2 cut(s) | 6095, 7104 |
| Cfr10I | RCCGGY | 1 cut(s) | 1126 |
| ClaI | ATCGAT | 1 cut(s) | 1764 |
| CseI | GACGC | 1 cut(s) | 7929 |
| CsiI | ACCWGGT | 1 cut(s) | 7075 |
| DraI | TTTAAA | 6 cut(s) | 511, 1720, 2323, 2566, 3085, 4506 |
| DraIII | CACNNNGTG | 1 cut(s) | 5136 |
| EaeI | YGGCCR | 5 cut(s) | 2589, 3056, 3961, 5127, 7626 |
| Eam1104I | CTCTTC | 7 cut(s) | 1156, 1497, 1568, 1611, 2116, 2358, 4962 |
| EarI | CTCTTC | 7 cut(s) | 1156, 1497, 1568, 1611, 2116, 2358, 4962 |
| EciI | GGCGGA | 1 cut(s) | 3642 |
| Ecl136II | GAGCTC | 2 cut(s) | 1929, 4972 |
| Eco105I | TACGTA | 1 cut(s) | 1601 |
| Eco130I | CCWWGG | 4 cut(s) | 2592, 6177, 6923, 7180 |
| Eco147I | AGGCCT | 1 cut(s) | 3803 |
| Eco24I | GRGCYC | 3 cut(s) | 1931, 2464, 4974 |
| Eco31I | GGTCTC | 5 cut(s) | 1271, 2779, 6427, 6598, 7862 |
| Eco32I | GATATC | 1 cut(s) | 3628 |
| Eco47I | GGWCC | 7 cut(s) | 132, 848, 2090, 2533, 4651, 5175, 7575 |
| Eco47III | AGCGCT | 1 cut(s) | 6094 |
| Eco53kI | GAGCTC | 2 cut(s) | 1929, 4972 |
| Eco81I | CCTNAGG | 1 cut(s) | 5073 |
| Eco88I | CYCGRG | 2 cut(s) | 3968, 6857 |
| EcoICRI | GAGCTC | 2 cut(s) | 1929, 4972 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 858, 3808, 5045, 5771 |
| EcoO109I | RGGNCCY | 1 cut(s) | 132 |
| EcoRI | GAATTC | 4 cut(s) | 1612, 3157, 4739, 6718 |
| EcoRV | GATATC | 1 cut(s) | 3628 |
| EcoT14I | CCWWGG | 4 cut(s) | 2592, 6177, 6923, 7180 |
| EcoT22I | ATGCAT | 1 cut(s) | 1977 |
| EcoT38I | GRGCYC | 3 cut(s) | 1931, 2464, 4974 |
| ErhI | CCWWGG | 4 cut(s) | 2592, 6177, 6923, 7180 |
| Esp3I | CGTCTC | 1 cut(s) | 1570 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4818, 4850 |
| FaqI | GGGAC | 6 cut(s) | 871, 1065, 2936, 6874, 7588, 7889 |
| FauI | CCCGC | 1 cut(s) | 6927 |
| FauNDI | CATATG | 2 cut(s) | 4224, 5842 |
| FbaI | TGATCA | 2 cut(s) | 594, 4153 |
| FblI | GTMKAC | 2 cut(s) | 5, 827 |
| FriOI | GRGCYC | 3 cut(s) | 1931, 2464, 4974 |
| GlaI | GCGC | 2 cut(s) | 6094, 7103 |
| GsaI | CCCAGC | 2 cut(s) | 5343, 7430 |
| GsuI | CTGGAG | 1 cut(s) | 7069 |
| HaeII | RGCGCY | 2 cut(s) | 6096, 7105 |
| HapII | CCGG | 8 cut(s) | 560, 1127, 2775, 3210, 4541, 4557, 7779, 7959 |
| HgaI | GACGC | 1 cut(s) | 7929 |
| HhaI | GCGC | 2 cut(s) | 6095, 7104 |
| Hin6I | GCGC | 2 cut(s) | 6093, 7102 |
| HinP1I | GCGC | 2 cut(s) | 6093, 7102 |
| HincII | GTYRAC | 4 cut(s) | 541, 1797, 3876, 7618 |
| HindII | GTYRAC | 4 cut(s) | 541, 1797, 3876, 7618 |
| HindIII | AAGCTT | 9 cut(s) | 1909, 2309, 2768, 5932, 6839, 6869, 6893, 7020, 7686 |
| HpaI | GTTAAC | 1 cut(s) | 3876 |
| HpaII | CCGG | 8 cut(s) | 560, 1127, 2775, 3210, 4541, 4557, 7779, 7959 |
| Hpy99I | CGWCG | 1 cut(s) | 4128 |
| HpyCH4IV | ACGT | 3 cut(s) | 307, 1600, 6964 |
| HpySE526I | ACGT | 3 cut(s) | 307, 1600, 6964 |
| HspAI | GCGC | 2 cut(s) | 6093, 7102 |
| Kpn2I | TCCGGA | 1 cut(s) | 4556 |
| Ksp22I | TGATCA | 2 cut(s) | 594, 4153 |
| KspAI | GTTAAC | 1 cut(s) | 3876 |
| LguI | GCTCTTC | 3 cut(s) | 1156, 1497, 4962 |
| LmnI | GCTCC | 8 cut(s) | 1741, 2038, 3941, 4543, 4631, 4822, 5887, 7488 |
| MabI | ACCWGGT | 1 cut(s) | 7075 |
| MaeII | ACGT | 3 cut(s) | 307, 1600, 6964 |
| MbiI | CCGCTC | 1 cut(s) | 7491 |
| MfeI | CAATTG | 5 cut(s) | 1778, 2175, 2874, 3770, 7579 |
| MflI | RGATCY | 8 cut(s) | 340, 2022, 3088, 3256, 4189, 5594, 7700, 7921 |
| MlsI | TGGCCA | 4 cut(s) | 2591, 3058, 5129, 7628 |
| MluNI | TGGCCA | 4 cut(s) | 2591, 3058, 5129, 7628 |
| Mox20I | TGGCCA | 4 cut(s) | 2591, 3058, 5129, 7628 |
| Mph1103I | ATGCAT | 1 cut(s) | 1977 |
| MroI | TCCGGA | 1 cut(s) | 4556 |
| MroXI | GAANNNNTTC | 4 cut(s) | 2711, 3368, 3562, 4401 |
| MscI | TGGCCA | 4 cut(s) | 2591, 3058, 5129, 7628 |
| MslI | CAYNNNNRTG | 3 cut(s) | 6012, 6033, 6660 |
| Msp20I | TGGCCA | 4 cut(s) | 2591, 3058, 5129, 7628 |
| MspA1I | CMGCKG | 3 cut(s) | 3101, 5339, 7453 |
| MspCI | CTTAAG | 5 cut(s) | 2723, 5249, 6628, 7198, 7535 |
| MspI | CCGG | 8 cut(s) | 560, 1127, 2775, 3210, 4541, 4557, 7779, 7959 |
| MssI | GTTTAAAC | 1 cut(s) | 1720 |
| MunI | CAATTG | 5 cut(s) | 1778, 2175, 2874, 3770, 7579 |
| Mva1269I | GAATGC | 7 cut(s) | 718, 1121, 1977, 4730, 5217, 6019, 6547 |
| NciI | CCSGG | 1 cut(s) | 7780 |
| NcoI | CCATGG | 2 cut(s) | 6177, 6923 |
| NdeI | CATATG | 2 cut(s) | 4224, 5842 |
| NmeAIII | GCCGAG | 3 cut(s) | 2443, 3465, 5287 |
| NmuCI | GTSAC | 9 cut(s) | 42, 421, 768, 982, 1129, 1937, 3386, 7787, 7880 |
| NsiI | ATGCAT | 1 cut(s) | 1977 |
| NspI | RCATGY | 6 cut(s) | 631, 1832, 1963, 3527, 3552, 4433 |
| NspV | TTCGAA | 1 cut(s) | 1113 |
| OliI | CACNNNNGTG | 2 cut(s) | 6033, 6660 |
| PaeI | GCATGC | 2 cut(s) | 1832, 4433 |
| PagI | TCATGA | 3 cut(s) | 3186, 5107, 6637 |
| PaqCI | CACCTGC | 2 cut(s) | 6558, 6919 |
| PceI | AGGCCT | 1 cut(s) | 3803 |
| PciI | ACATGT | 2 cut(s) | 627, 3523 |
| PciSI | GCTCTTC | 3 cut(s) | 1156, 1497, 4962 |
| PctI | GAATGC | 7 cut(s) | 718, 1121, 1977, 4730, 5217, 6019, 6547 |
| PdmI | GAANNNNTTC | 4 cut(s) | 2711, 3368, 3562, 4401 |
| Pfl23II | CGTACG | 1 cut(s) | 4424 |
| PflFI | GACNNNGTC | 1 cut(s) | 2148 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2026, 3286 |
| PfoI | TCCNGGA | 2 cut(s) | 2025, 4743 |
| Ple19I | CGATCG | 1 cut(s) | 6678 |
| PmeI | GTTTAAAC | 1 cut(s) | 1720 |
| Ppu21I | YACGTR | 1 cut(s) | 1601 |
| PpuMI | RGGWCCY | 1 cut(s) | 132 |
| PscI | ACATGT | 2 cut(s) | 627, 3523 |
| PshBI | ATTAAT | 1 cut(s) | 2106 |
| PsiI | TTATAA | 2 cut(s) | 7038, 7470 |
| Psp124BI | GAGCTC | 2 cut(s) | 1931, 4974 |
| Psp5II | RGGWCCY | 1 cut(s) | 132 |
| PspFI | CCCAGC | 2 cut(s) | 5339, 7426 |
| PspLI | CGTACG | 1 cut(s) | 4424 |
| PspPPI | RGGWCCY | 1 cut(s) | 132 |
| PstI | CTGCAG | 1 cut(s) | 2196 |
| PstNI | CAGNNNCTG | 3 cut(s) | 953, 2026, 7607 |
| PsuI | RGATCY | 8 cut(s) | 340, 2022, 3088, 3256, 4189, 5594, 7700, 7921 |
| PsyI | GACNNNGTC | 1 cut(s) | 2148 |
| PvuI | CGATCG | 1 cut(s) | 6678 |
| PvuII | CAGCTG | 2 cut(s) | 5339, 7453 |
| RseI | CAYNNNNRTG | 3 cut(s) | 6012, 6033, 6660 |
| SacI | GAGCTC | 2 cut(s) | 1931, 4974 |
| SapI | GCTCTTC | 3 cut(s) | 1156, 1497, 4962 |
| SexAI | ACCWGGT | 1 cut(s) | 7075 |
| SfcI | CTRYAG | 4 cut(s) | 2192, 4494, 5277, 7794 |
| SfuI | TTCGAA | 1 cut(s) | 1113 |
| SinI | GGWCC | 7 cut(s) | 132, 848, 2090, 2533, 4651, 5175, 7575 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 6012, 6033, 6660 |
| SnaBI | TACGTA | 1 cut(s) | 1601 |
| SpeI | ACTAGT | 1 cut(s) | 2810 |
| SphI | GCATGC | 2 cut(s) | 1832, 4433 |
| SseBI | AGGCCT | 1 cut(s) | 3803 |
| SspI | AATATT | 5 cut(s) | 1695, 4401, 5474, 6958, 7888 |
| SstI | GAGCTC | 2 cut(s) | 1931, 4974 |
| StuI | AGGCCT | 1 cut(s) | 3803 |
| StyI | CCWWGG | 4 cut(s) | 2592, 6177, 6923, 7180 |
| TaiI | ACGT | 3 cut(s) | 310, 1603, 6967 |
| TaqII | GACCGA | 3 cut(s) | 409, 1295, 2078 |
| TatI | WGTACW | 6 cut(s) | 72, 1566, 2202, 4750, 4758, 5014 |
| TauI | GCSGC | 4 cut(s) | 3101, 6455, 7494, 7757 |
| TseFI | GTSAC | 9 cut(s) | 42, 421, 768, 982, 1129, 1937, 3386, 7787, 7880 |
| Tsp45I | GTSAC | 9 cut(s) | 42, 421, 768, 982, 1129, 1937, 3386, 7787, 7880 |
| TspGWI | ACGGA | 6 cut(s) | 449, 2737, 3923, 4412, 4643, 6168 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2148 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2026, 3286 |
| Vha464I | CTTAAG | 5 cut(s) | 2723, 5249, 6628, 7198, 7535 |
| VneI | GTGCAC | 2 cut(s) | 664, 5562 |
| VpaK11BI | GGWCC | 7 cut(s) | 132, 848, 2090, 2533, 4651, 5175, 7575 |
| VspI | ATTAAT | 1 cut(s) | 2106 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 858, 3808, 5045, 5771 |
| XbaI | TCTAGA | 3 cut(s) | 2672, 7096, 7405 |
| XceI | RCATGY | 6 cut(s) | 631, 1832, 1963, 3527, 3552, 4433 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2813 |
| XmiI | GTMKAC | 2 cut(s) | 5, 827 |
| XmnI | GAANNNNTTC | 4 cut(s) | 2711, 3368, 3562, 4401 |
| Zsp2I | ATGCAT | 1 cut(s) | 1977 |