pycom13g00880

TPR and ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
543023 .. 549737
6715 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g00880.8

Sequence Viewer

Length: 5673 bp
ATGTCTCTCTTACAAGATGACTTCAGGCACTGTCTCTGGATTTTGGGGAATGAAAGAACGCTATCTAATAGTAAATCTGTTTGGGAGGCCTTGGTCTTGGATGCCAAAATTCGTCAATGCTTTTTTAATGCTGATGAAGACAAGGATTTGGCAAAATCCATATTAGAGGTGAAGAAAGAGTTTGAGCAATTTGATGATTTGCTTAATCCTGACAGCATACTCTTCAGCAGTAAAATATGGAAGGTACTTTTCAGTGATATTTTCCTGAAGTCGTTCAAAAAACTGAAGTCGATCCGTTTGAAGAAGTCAGTGCTTAATCTTCTACTTAAGCTTTCTGGTGGCTGGAGACCAAGAAAGCGAAATGTAGAGACTATTAGTGGAAACTCATCAGCAATCTTGAGGCAGTATAAAGTTGAAGGTCTATATGTTGTCTGCTCAATTGACATTGTGAAGGAGATGAAATACATTCAAGTTTTAAAGATTTGGGATATATTGCCTCTAGAGGATATCCCCAAATTGAAAAATCGCTTGGAGAGTATTTTCAATAGATATACAGATGATTTCATCAATCGTTGCAATGAGACGTGTCTTGACGGTGATTTAGAAGTTCCGAATAGCTGGCCACCCACTTTGGATATTCCCCGGTTTAAGGACCTTAACAACACTGAAGCTGAGAGTGACTTAGTTGGTGACACTTCTGACGGTAGAAGTTATGTTGAGAATTCACAGGTCAACGAGAGTTTATTGCTCTTGAAGTTTTACTCATTGTCATCTGGTGTTGTGAATCACTTGCTGTCTGACCGCGAGGGTAGAGAGTTGGATCTTCCATTTGAAGTTACTGACCAGGAAATGGAGATTATCCTTTATCAGAGAAGTACCTTTATACTTGGACGGTCAGGAACAGGGAAAACCACTGTTTTAACCATGAAATTATTTCAAAAAGAACAATGTTTTCAGTTGGCAGAGCAAGGATGCCTCGGTAGTCAAAATAGCAATGTTGGGCAGAGTTCTTCAGCTACTCAGGAAAGAACTCTACACCAGCTTTTTGTGACCGTGAGTCCTAAGCTATGTTTTGCCATCAAGCAACATGTTCTACACTTGAAAAGTTTTGCATGTGGTGGAAGTGATTCAGCTGAGAAAAGTTCGATTGATATGGCTGATTTTGATGAAGAGGAGTCTCAATTCAAGGATATCAAGGATTCATTTCAGGATATTTCTCCCAAATCTTACCCTCTTGTTATAACATTTCATAAGTTCTTAATGATGCTTGATGGAACGCTGAGTAATTCGTACTTTGATAGATTCCTGGAGGCTAGGACACTTACTCAAGGTCAATTGAGAAGCTCAAGATCCGTTGCATTGCAGACGTTTATAAGGACAAAGGAGGTTAATTATGATAGATTCAGTTTGTCTTACTGGCCCCATTTCAATATGCAGTTAACGAAGAAGCTTGATGCTTCCAGAGTCTTCACAGAGATAATATCTCATATTAAAGGTGGTATTGGAGCCATAGAAGCAGGTGATGGTAAACTCAGCCGGGAGGATTATGTTCACCTGTCCGAGGGCCGGGGTTCCATTTTAAGCAAGCAAACGAGAGAAGAAATATACGATATTTTTGAGGCTTATGAAAAAATGAAGATGGAAAAAGGTGAATTTGATCTGGCTGATTTTGTAATTGATCTTCACCATCGTCTCAGGCATGGAAAATTTGTGGGTGACCAAATGGATTTTGTTTATATCGATGAGGTTCAAGATCTCACAATGAGTCAAATTGCTCTGTTTAAGCATGTGAGCAACAATGTTGAAGAAGGCTTTGTCTTTTCTGGTGATACAGCACAAACAATTGCTAGGGGTATTGATTTCAGGTTCCAAGATATACGGCATCTCTTTTACAAGAAGTTTGTGTTGGAAGCTAGAGGGAATGAGCCTCACGAAAGAAAAGAAAAGGGACAAATATCAGAAGTTAAACAATTGACTCAAAACTTCCGTACCCATGCTGGTGTATTGAAGTTATCACAGAGCATTGTTGAACTACTTTATCGTTTTTTCCCCCAATCGATTGATATTTTGGCACCTGAAACCAGTCTGATATATGGGGAAGCTCCGGTGGTGCTTGAATCCGGAGAAGATGAAAATGCAATCGTAAAAATTTTTGGGAATAGTGGAAATGATAGTGCAAATATAGTTGGCTTCGGCGCAGAGCAAGTTATTTTGGTCCGTGATGATGATGCTAGGAAAGAAGTTTCCAAATTTGTTGGGAAGCATGCTCTTGTTCTGACCATAGTGGAATGCAAGGGGCTTGAATTCCAGGATGTACTCTTGTACAACTTTTTTGGCTCATCACCAATGAAAACGAAATGGAGGGTGATATATGATTATATGAAGGACCAATATTTACTTGACTCCACATTGCCCCAACGCTTTCCAAGGTTCAGTGAAGCCAAACACAACATCTTATGCTCTGAACTCAAACAATTATATGTTGCTGTTACTCGGACAAGACAGAGGTTGTGGGTTTGCGAGAATGCAGAAGAGATTTCCAAACCAATGTTTGACTATTGGAAGAAGAAATGTCTTGTACAAGTTAGGCAACTGGATGATTCCCTTGCACAAGCAATGCAAGTTGCAAGCAGCCCCGAGGAGTGGAAATCACGAGGCATTAAGCTATACCACGAACATAACTATGAAATGGCCACAATGTGCTTTGAAAGAGCTGGTGATACTTATTGGGAAAGAAGGTCCAAAGCTGCTGGCCTTAAAGCTATCGCTGATCGTATGCGGACTTCAAATCCTGTAGAGGCCAATACCATTCTTAAGGAAGCTGCCGAGATATTTGATGCTATAGGCAAGGCAGATTCCGCAGCTAGATGTTTTTCTGATTTGGGAGAGTATGAAAGAGCAGCTAGGATTTATTTGGATAAATGTGGTGAATTGGAAAGAGCAGGAGAATGTTTTTCTCTGGCAGGATGCTATCAAGATGCCGCAGATGTGTACGCTAAAGGCAATTTTTTCTCCGAGTGTCTCACTGTTTGTGCCAAAGGAAAGCTATTTGAAATGGGTTTGAAATACATCGAATATTGGAAGGAGCATCCGGTAGAGGACACTGCTGTGGCCACAAGAGAAGAAGGAATAGATAAAATTGAGCAGGAATTTCTGGAGAGCTGCGCACTTCACTATTACGAGTTGAAAGATAACAGATCCATGATGAAGTTTGTTAGAGCTTTTAATTCTATAATTTCAATGCGAAACTTTTTGAAGAAGTACGCTACTCTTGATGAGCTGCTTCTGTTGGAAGAAGGATTTGGAAACTATCTTGAGGCCGTAGAAGTAGCAAAACTGAAAGGCGATATTCTACTCGAAGCTGATTTCCTTGAGAAGGCTGGCAAGTTCGGAGAGGCATCATTGCGTATTCTATTCTATGTGCTTGCCAACTCTCTTTGGTCATATGGCAGCAAGGGGTGGCCTATTAAGCAGTTTTCACAAAAGAAGGAGCTTTTATCAAAAGCCAAGTCGTGTGCTAACAATGAGTCTGAAAGCTTTTATGAGTTTGTTTGCACTGAGGTAGACATTTTATTGAATGAGCAGAGTAGCTTGGCTCTGATGAAAAACCAAATGAATGCCTGCGAGAGACATAGGAGTATTGGAGGTGAAATTTTGTCGGCTCGAAAAATACTGGATGCTCATCTTTCTTCAAGTGCCAATAAGTACGTGTGGGTAAAAGAATTGGTTGATGATCCGGTAAAGCGTTCAGAAGACAGGATATCTGAGAACCAGGTTTCTACACATTCGTTGATGTACATCTGGAACTTTTGGAAGTATAAAATTGCTTACATGATTGAATGTCTTGGATGCCTTGATACCCAAGATTTTAATGAATTCCAAAAGAATGGAGAATTTTGTTTTAATTACTTTGGAGTATGGAGGTTGTATCGGAATTTTAATCCAGTCTATGTGCTACTGATTTCTGATGCTGATTGGGCTCGAGGCCTGGACAAAAGACATCATGGGAAGTTGGTCTCCGTTGATGCTCACCAGCTTGCTTCAGCCGCTATGAATTATTGGAGTTCAGAATTGCTCTCAGTTGGCATGAAGGTTCTGGACAAACTTGAAGTGCTTTGCAAGTTTCCAATGAAGAATCATGATCCATCGTTCTCCCAAAGCTGGTGTCTTATCCATATCCGTGAGGTCGCAGTATGTCTTTTGCAATCAAAATATTTGAAGCTAAGGGATCAAGATACTAAGACGCTGCAGAGGTTTGTTACTTCTTCGACTGAGAGTGTTGTTGCTCGAATATTTCCCTTGGATTCAAGGAATTCCGTGACAGAGAATATGATTTCCTTTAGAAGAAATGATGCTTCAAAGAATGTGCTGAAACAAGTAATAGTCGAGTATACCAGCTCCAAGAACACGCTGTCTCTTGGGGAAATTGGAAGGCTTGTAATGGTCATTCTGGGGTCTGGGAAGCTGAATAGTGAACTGTATGAGAAGCTTGTGAAAAATCTGGAGGGCAACTCACCGTGGATGGCGTTTATCAGGATTCTCTGTAGGGATATTAAACCTGGAAATGCTAGTCAAGTACCGAGAGAGGTGTCAGTTATATGGAGGTTACATGAAGCTTTAGTTGAAACTTATAGGATAGACTGGAGGAGGGTTAATGATTACATGTCGCCTGGTTGCTTTATGTACCTTGTAGAGCGCCTTGTGACTTTGGCAACTTGTTTCCAAGGTTTTGTTATCACTACACGCTCCTGTTTTGTGGAATGGCTTCTATACCAAGATGAAGACACCAACTTGAGTCTGATGACGGCCAATGTGCGACCATCTTTGGATGAGATTGTTGGTTTTGTGATTGATGTGGTTTGTGGCTGTGTTTTCAACAAGGACGATATGATTGGATGGATCAAAAAGTCCAGCAGAAATTGGAAGAACGATTATTCACCACTCTTGCTGAGATTGGTTGTGCTACTTTGCATGGTTTGTGTGAACTTTGGGAAGGGTCTAAATATACTGGATAAGTTGCTGGGGAGGAGCGATATCACGCAACTCCTTCCGTGGGAGTTTTATGACGTCCTTAAAAGCAGGAGGAGCCGCAACTCCCCAAGCATAATGCTGAATGTGCTAGTCGCTGCTGCTCTTCAGAAGATCGGAAATACTATGGTAATAGCAAGTTTTGGGGTCAATTGTTCAAGGTTCTCATGTTCAGATGCCATCTTTGTGGACATAAAGGCCAGCCAGTCCCAGTCCAGGGATGACATCTATAGAAAATTATTTCCTAACATTCCCGTCCTGCAAGCTTCACACGCTAAATCTGTTGAAGCAGGAGCTACTCAATCTAGCAGTCGTGCCATTTCTGAGGAGGGGAAGAGTTGTAAGATTCTGCCTTCAAACTCTGGTGTGGTGGAACCATTAGAGACTAGTGTTGGGGACAGTCAAAATGCAGGTGAGGAACATTCTGTATCGAACGAGTCAAATCCAAAGTCTTCGCCTGCGGACACTGCTTCTGGATCCCAGCATGGCAGCGGTAAGGAAACTGGAAACCAGGGGAAGAACAATGGCCAGAACAAGGAAGTTGGTGCCGCTTCAGGATCCCAACGTGGCAGCAATGAAACTGGAAACCAGGGGAAGAAAAAGGGCAAGAACAAGAAACCCAAGAAGAGAGGAGGCAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1891

Amino Acids

215.11

Weight (kDa)

6.56

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1241, 1373
AarI CACCTGC 2 cut(s) 1508, 5429
AatII GACGTC 1 cut(s) 5070
Acc16I TGCGCA 1 cut(s) 3166
Acc36I ACCTGC 2 cut(s) 1508, 5429
AccB1I GGYRCC 2 cut(s) 2071, 5573
AccB7I CCANNNNNTGG 1 cut(s) 850
AccI GTMKAC 2 cut(s) 3564, 4391
AccII CGCG 1 cut(s) 804
AccIII TCCGGA 1 cut(s) 2120
AciI CCGC 9 cut(s) 802, 2779, 2859, 2982, 4047, 5089, 5489, 5520, 5577
AcoI YGGCCR 5 cut(s) 620, 2691, 3111, 4806, 5554
AcuI CTGAAG 9 cut(s) 7, 208, 287, 305, 687, 996, 4026, 5120, 5565
AcyI GRCGYC 1 cut(s) 5067
AdeI CACNNNGTG 1 cut(s) 2700
AflII CTTAAG 2 cut(s) 326, 2813
AflIII ACRYGT 4 cut(s) 584, 1087, 3708, 4662
AhdI GACNNNNNGTC 1 cut(s) 1056
AhlI ACTAGT 1 cut(s) 5414
AjiI CACGTC 1 cut(s) 585
AjuI GAANNNNNNNTTGG 6 cut(s) 512, 544, 1889, 1921, 3285, 3317
AleI CACNNNNGTG 1 cut(s) 3107
AlwNI CAGNNNCTG 1 cut(s) 30
Ama87I CYCGRG 2 cut(s) 2636, 3981
Aor13HI TCCGGA 1 cut(s) 2120
ArsI GACNNNNNNTTYG 6 cut(s) 3494, 3526, 4150, 4182, 5462, 5494
Asp700I GAANNNNTTC 3 cut(s) 272, 1126, 4764
AspLEI GCGC 3 cut(s) 2198, 3167, 4698
AspS9I GGNCC 6 cut(s) 652, 1419, 1564, 2215, 2386, 2739
AsuC2I CCSGG 3 cut(s) 643, 1538, 1568
AvaI CYCGRG 2 cut(s) 2636, 3981
AvaII GGWCC 4 cut(s) 652, 2215, 2386, 2739
BaeI ACNNNNGTAYC 2 cut(s) 1972, 2005
BalI TGGCCA 4 cut(s) 622, 2693, 3113, 5556
BamHI GGATCC 2 cut(s) 5504, 5585
BanI GGYRCC 2 cut(s) 2071, 5573
BanII GRGCYC 1 cut(s) 3982
BarI GAAGNNNNNNTAC 4 cut(s) 1665, 1697, 2767, 2799
BauI CACGAG 1 cut(s) 2652
BbsI GAAGAC 5 cut(s) 144, 1459, 3759, 4788, 5472
BceAI ACGGC 3 cut(s) 1895, 3305, 4821
BcnI CCSGG 3 cut(s) 643, 1538, 1568
BcuI ACTAGT 1 cut(s) 5414
BfmI CTRYAG 5 cut(s) 2793, 2841, 4247, 4543, 5257
BfoI RGCGCY 1 cut(s) 4699
BfrI CTTAAG 2 cut(s) 326, 2813
BfuAI ACCTGC 2 cut(s) 1508, 5429
BglII AGATCT 1 cut(s) 1753
Bme18I GGWCC 4 cut(s) 652, 2215, 2386, 2739
BmeRI GACNNNNNGTC 1 cut(s) 1056
BmeT110I CYCGRG 2 cut(s) 2636, 3981
BmgBI CACGTC 1 cut(s) 585
BmgT120I GGNCC 6 cut(s) 652, 1419, 1564, 2215, 2386, 2739
BmrI ACTGGG 1 cut(s) 5233
BmuI ACTGGG 1 cut(s) 5233
BpiI GAAGAC 5 cut(s) 144, 1459, 3759, 4788, 5472
BplI GAGNNNNNCTC 2 cut(s) 4496, 4528
BpmI CTGGAG 5 cut(s) 364, 1328, 3176, 4523, 4663
Bpu10I CCTNAGC 2 cut(s) 1062, 4223
BpuEI CTTGAG 6 cut(s) 418, 1311, 1330, 3335, 3392, 4813
BpuMI CCSGG 3 cut(s) 643, 1538, 1568
Bsa29I ATCGAT 2 cut(s) 1740, 2057
BsaAI YACGTR 1 cut(s) 3709
BsaBI GATNNNNATC 2 cut(s) 3681, 3797
BsaHI GRCGYC 1 cut(s) 5067
BsaI GGTCTC 2 cut(s) 340, 4021
BsaWI WCCGGW 4 cut(s) 2104, 2120, 3091, 3736
Bse3DI GCAATG 7 cut(s) 583, 1000, 1358, 2408, 2622, 3401, 5608
Bse8I GATNNNNATC 2 cut(s) 3681, 3797
BseAI TCCGGA 1 cut(s) 2120
BseCI ATCGAT 2 cut(s) 1740, 2057
BseJI GATNNNNATC 2 cut(s) 3681, 3797
BseMI GCAATG 7 cut(s) 583, 1000, 1358, 2408, 2622, 3401, 5608
BseRI GAGGAG 7 cut(s) 1187, 2654, 4660, 5041, 5098, 5369, 5673
BseYI CCCAGC 2 cut(s) 5020, 5508
Bsh1236I CGCG 1 cut(s) 804
BshNI GGYRCC 2 cut(s) 2071, 5573
BshVI ATCGAT 2 cut(s) 1740, 2057
BsiHKCI CYCGRG 2 cut(s) 2636, 3981
BsiSI CCGG 7 cut(s) 643, 1537, 1567, 2105, 2121, 3092, 3737
BslFI GGGAC 3 cut(s) 1962, 5221, 5438
BsmBI CGTCTC 2 cut(s) 575, 1697
BsmFI GGGAC 3 cut(s) 1962, 5221, 5438
BsmI GAATGC 3 cut(s) 2294, 2530, 3622
Bso31I GGTCTC 2 cut(s) 340, 4021
BsoBI CYCGRG 2 cut(s) 2636, 3981
Bsp1286I GDGCHC 1 cut(s) 3982
Bsp13I TCCGGA 1 cut(s) 2120
Bsp1407I TGTACA 3 cut(s) 2322, 2578, 3795
BspACI CCGC 9 cut(s) 802, 2779, 2859, 2982, 4047, 5089, 5489, 5520, 5577
BspDI ATCGAT 2 cut(s) 1740, 2057
BspEI TCCGGA 1 cut(s) 2120
BspFNI CGCG 1 cut(s) 804
BspHI TCATGA 1 cut(s) 4138
BspMAI CTGCAG 1 cut(s) 4251
BspMI ACCTGC 2 cut(s) 1508, 5429
BspQI GCTCTTC 1 cut(s) 5139
BspT107I GGYRCC 2 cut(s) 2071, 5573
BspTI CTTAAG 2 cut(s) 326, 2813
BspTNI GGTCTC 2 cut(s) 340, 4021
BsrDI GCAATG 7 cut(s) 583, 1000, 1358, 2408, 2622, 3401, 5608
BsrGI TGTACA 3 cut(s) 2322, 2578, 3795
BssNAI GTATAC 1 cut(s) 4392
BssNI GRCGYC 1 cut(s) 5067
BssSI CACGAG 1 cut(s) 2652
BssT1I CCWWGG 4 cut(s) 90, 2426, 4299, 4723
Bst1107I GTATAC 1 cut(s) 4392
Bst2BI CACGAG 1 cut(s) 2652
Bst6I CTCTTC 6 cut(s) 227, 1164, 2526, 5139, 5357, 5648
BstACI GRCGYC 1 cut(s) 5067
BstAFI CTTAAG 2 cut(s) 326, 2813
BstAUI TGTACA 3 cut(s) 2322, 2578, 3795
BstBAI YACGTR 1 cut(s) 3709
BstDSI CCRYGG 2 cut(s) 4517, 5051
BstEII GGTNACC 1 cut(s) 1715
BstENI CCTNNNNNAGG 2 cut(s) 1559, 3374
BstFNI CGCG 1 cut(s) 804
BstH2I RGCGCY 1 cut(s) 4699
BstHHI GCGC 3 cut(s) 2198, 3167, 4698
BstMWI GCNNNNNNNGC 9 cut(s) 1514, 2858, 3469, 3977, 4046, 5085, 5116, 5300, 5495
BstNSI RCATGY 5 cut(s) 1091, 1116, 1790, 2267, 4666
BstPI GGTNACC 1 cut(s) 1715
BstSFI CTRYAG 5 cut(s) 2793, 2841, 4247, 4543, 5257
BstUI CGCG 1 cut(s) 804
BstV2I GAAGAC 5 cut(s) 144, 1459, 3759, 4788, 5472
BstX2I RGATCY 6 cut(s) 820, 1349, 1753, 3197, 5504, 5585
BstXI CCANNNNNNTGG 2 cut(s) 3887, 5215
BstYI RGATCY 6 cut(s) 820, 1349, 1753, 3197, 5504, 5585
BstZ17I GTATAC 1 cut(s) 4392
Bsu15I ATCGAT 2 cut(s) 1740, 2057
BsuTUI ATCGAT 2 cut(s) 1740, 2057
BtgI CCRYGG 2 cut(s) 4517, 5051
BtrI CACGTC 1 cut(s) 585
BtsI GCAGTG 2 cut(s) 3102, 5493
BveI ACCTGC 2 cut(s) 1508, 5429
CaiI CAGNNNCTG 1 cut(s) 30
CciI TCATGA 1 cut(s) 4138
CfoI GCGC 3 cut(s) 2198, 3167, 4698
Cfr13I GGNCC 6 cut(s) 652, 1419, 1564, 2215, 2386, 2739
ClaI ATCGAT 2 cut(s) 1740, 2057
CseI GACGC 1 cut(s) 4252
CsiI ACCWGGT 1 cut(s) 3771
CspCI CAANNNNNGTGG 2 cut(s) 612, 647
DraI TTTAAA 1 cut(s) 477
DraIII CACNNNGTG 1 cut(s) 2700
DriI GACNNNNNGTC 1 cut(s) 1056
EaeI YGGCCR 5 cut(s) 620, 2691, 3111, 4806, 5554
Eam1104I CTCTTC 6 cut(s) 227, 1164, 2526, 5139, 5357, 5648
Eam1105I GACNNNNNGTC 1 cut(s) 1056
EarI CTCTTC 6 cut(s) 227, 1164, 2526, 5139, 5357, 5648
Eco130I CCWWGG 4 cut(s) 90, 2426, 4299, 4723
Eco147I AGGCCT 2 cut(s) 89, 3987
Eco24I GRGCYC 1 cut(s) 3982
Eco31I GGTCTC 2 cut(s) 340, 4021
Eco32I GATATC 4 cut(s) 508, 1192, 3762, 5035
Eco47I GGWCC 4 cut(s) 652, 2215, 2386, 2739
Eco57I CTGAAG 9 cut(s) 7, 208, 287, 305, 687, 996, 4026, 5120, 5565
Eco88I CYCGRG 2 cut(s) 2636, 3981
Eco91I GGTNACC 1 cut(s) 1715
EcoNI CCTNNNNNAGG 2 cut(s) 1559, 3374
EcoO109I RGGNCCY 1 cut(s) 652
EcoO65I GGTNACC 1 cut(s) 1715
EcoRI GAATTC 4 cut(s) 721, 2303, 3875, 4312
EcoRV GATATC 4 cut(s) 508, 1192, 3762, 5035
EcoT14I CCWWGG 4 cut(s) 90, 2426, 4299, 4723
EcoT38I GRGCYC 1 cut(s) 3982
ErhI CCWWGG 4 cut(s) 90, 2426, 4299, 4723
Esp3I CGTCTC 2 cut(s) 575, 1697
FaqI GGGAC 3 cut(s) 1962, 5221, 5438
FauNDI CATATG 1 cut(s) 3445
FblI GTMKAC 2 cut(s) 3564, 4391
FriOI GRGCYC 1 cut(s) 3982
FspI TGCGCA 1 cut(s) 3166
GlaI GCGC 3 cut(s) 2197, 3166, 4697
GsaI CCCAGC 2 cut(s) 5024, 5512
GsuI CTGGAG 5 cut(s) 364, 1328, 3176, 4523, 4663
HaeII RGCGCY 1 cut(s) 4699
HapII CCGG 7 cut(s) 643, 1537, 1567, 2105, 2121, 3092, 3737
HgaI GACGC 1 cut(s) 4252
HhaI GCGC 3 cut(s) 2198, 3167, 4698
Hin1I GRCGYC 1 cut(s) 5067
Hin6I GCGC 3 cut(s) 2196, 3165, 4696
HinP1I GCGC 3 cut(s) 2196, 3165, 4696
HincII GTYRAC 2 cut(s) 733, 1440
HindII GTYRAC 2 cut(s) 733, 1440
HindIII AAGCTT 6 cut(s) 329, 1448, 3535, 4487, 4614, 5292
HpaI GTTAAC 1 cut(s) 1440
HpaII CCGG 7 cut(s) 643, 1537, 1567, 2105, 2121, 3092, 3737
HpyCH4IV ACGT 5 cut(s) 584, 1367, 3708, 5067, 5593
HpyF10VI GCNNNNNNNGC 9 cut(s) 1514, 2858, 3469, 3977, 4046, 5085, 5116, 5300, 5495
HpySE526I ACGT 5 cut(s) 584, 1367, 3708, 5067, 5593
Hsp92I GRCGYC 1 cut(s) 5067
HspAI GCGC 3 cut(s) 2196, 3165, 4696
Kpn2I TCCGGA 1 cut(s) 2120
KspAI GTTAAC 1 cut(s) 1440
LguI GCTCTTC 1 cut(s) 5139
LmnI GCTCC 9 cut(s) 1505, 2107, 3085, 3490, 4403, 4751, 5028, 5085, 5321
MabI ACCWGGT 1 cut(s) 3771
MaeII ACGT 5 cut(s) 584, 1367, 3708, 5067, 5593
MfeI CAATTG 5 cut(s) 438, 1334, 1842, 1970, 5179
MflI RGATCY 6 cut(s) 820, 1349, 1753, 3197, 5504, 5585
MhlI GDGCHC 1 cut(s) 3982
MlsI TGGCCA 4 cut(s) 622, 2693, 3113, 5556
MluNI TGGCCA 4 cut(s) 622, 2693, 3113, 5556
MlyI GAGTC 9 cut(s) 1066, 1184, 1473, 1774, 1969, 2396, 3536, 4804, 5474
MmeI TCCRAC 3 cut(s) 798, 1887, 3270
Mox20I TGGCCA 4 cut(s) 622, 2693, 3113, 5556
MroI TCCGGA 1 cut(s) 2120
MroXI GAANNNNTTC 3 cut(s) 272, 1126, 4764
MscI TGGCCA 4 cut(s) 622, 2693, 3113, 5556
MslI CAYNNNNRTG 5 cut(s) 1998, 2682, 3107, 4179, 5213
Msp20I TGGCCA 4 cut(s) 622, 2693, 3113, 5556
MspA1I CMGCKG 2 cut(s) 1133, 5520
MspCI CTTAAG 2 cut(s) 326, 2813
MspI CCGG 7 cut(s) 643, 1537, 1567, 2105, 2121, 3092, 3737
MunI CAATTG 5 cut(s) 438, 1334, 1842, 1970, 5179
Mva1269I GAATGC 3 cut(s) 2294, 2530, 3622
MvnI CGCG 1 cut(s) 804
MwoI GCNNNNNNNGC 9 cut(s) 1514, 2858, 3469, 3977, 4046, 5085, 5116, 5300, 5495
NciI CCSGG 3 cut(s) 643, 1538, 1568
NdeI CATATG 1 cut(s) 3445
NmeAIII GCCGAG 1 cut(s) 2851
NmuCI GTSAC 6 cut(s) 677, 689, 1048, 1715, 4318, 4702
NsbI TGCGCA 1 cut(s) 3166
NspI RCATGY 5 cut(s) 1091, 1116, 1790, 2267, 4666
OliI CACNNNNGTG 1 cut(s) 3107
PaeI GCATGC 1 cut(s) 2267
PaeR7I CTCGAG 1 cut(s) 3981
PagI TCATGA 1 cut(s) 4138
PaqCI CACCTGC 2 cut(s) 1508, 5429
PceI AGGCCT 2 cut(s) 89, 3987
PciI ACATGT 2 cut(s) 1087, 4662
PciSI GCTCTTC 1 cut(s) 5139
PctI GAATGC 3 cut(s) 2294, 2530, 3622
PdmI GAANNNNTTC 3 cut(s) 272, 1126, 4764
PflMI CCANNNNNTGG 1 cut(s) 850
PfoI TCCNGGA 2 cut(s) 1305, 2307
PleI GAGTC 9 cut(s) 1065, 1183, 1472, 1773, 1969, 2396, 3535, 4803, 5473
PpsI GAGTC 9 cut(s) 1065, 1183, 1472, 1773, 1969, 2396, 3535, 4803, 5473
Ppu21I YACGTR 1 cut(s) 3709
PpuMI RGGWCCY 1 cut(s) 652
PscI ACATGT 2 cut(s) 1087, 4662
PsiI TTATAA 2 cut(s) 1241, 1373
Psp5II RGGWCCY 1 cut(s) 652
PspEI GGTNACC 1 cut(s) 1715
PspFI CCCAGC 2 cut(s) 5020, 5508
PspPI GGNCC 6 cut(s) 652, 1419, 1564, 2215, 2386, 2739
PspPPI RGGWCCY 1 cut(s) 652
PspXI VCTCGAGB 1 cut(s) 3981
PstI CTGCAG 1 cut(s) 4251
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 6 cut(s) 820, 1349, 1753, 3197, 5504, 5585
PvuII CAGCTG 1 cut(s) 1133
RseI CAYNNNNRTG 5 cut(s) 1998, 2682, 3107, 4179, 5213
SapI GCTCTTC 1 cut(s) 5139
Sau96I GGNCC 6 cut(s) 652, 1419, 1564, 2215, 2386, 2739
SchI GAGTC 9 cut(s) 1066, 1184, 1473, 1774, 1969, 2396, 3536, 4804, 5474
SduI GDGCHC 1 cut(s) 3982
SexAI ACCWGGT 1 cut(s) 3771
SfcI CTRYAG 5 cut(s) 2793, 2841, 4247, 4543, 5257
Sfr274I CTCGAG 1 cut(s) 3981
SinI GGWCC 4 cut(s) 652, 2215, 2386, 2739
SlaI CTCGAG 1 cut(s) 3981
SmiMI CAYNNNNRTG 5 cut(s) 1998, 2682, 3107, 4179, 5213
SmlI CTYRAG 9 cut(s) 326, 397, 1326, 1345, 2813, 3314, 3371, 3981, 4792
SmoI CTYRAG 9 cut(s) 326, 397, 1326, 1345, 2813, 3314, 3371, 3981, 4792
SpeI ACTAGT 1 cut(s) 5414
SphI GCATGC 1 cut(s) 2267
SseBI AGGCCT 2 cut(s) 89, 3987
SsiI CCGC 9 cut(s) 802, 2779, 2859, 2982, 4047, 5089, 5489, 5520, 5577
SspI AATATT 4 cut(s) 2393, 3077, 4214, 4293
StuI AGGCCT 2 cut(s) 89, 3987
StyI CCWWGG 4 cut(s) 90, 2426, 4299, 4723
TaiI ACGT 5 cut(s) 587, 1370, 3711, 5070, 5596
TatI WGTACW 4 cut(s) 2314, 2322, 2578, 3795
TauI GCSGC 4 cut(s) 2984, 4049, 5091, 5579
TseFI GTSAC 6 cut(s) 677, 689, 1048, 1715, 4318, 4702
Tsp45I GTSAC 6 cut(s) 677, 689, 1048, 1715, 4318, 4702
TspGWI ACGGA 8 cut(s) 284, 1342, 1976, 2207, 4009, 4169, 4306, 5040
Van91I CCANNNNNTGG 1 cut(s) 850
Vha464I CTTAAG 2 cut(s) 326, 2813
VpaK11BI GGWCC 4 cut(s) 652, 2215, 2386, 2739
XagI CCTNNNNNAGG 2 cut(s) 1559, 3374
XbaI TCTAGA 1 cut(s) 499
XceI RCATGY 5 cut(s) 1091, 1116, 1790, 2267, 4666
XhoI CTCGAG 1 cut(s) 3981
XmiI GTMKAC 2 cut(s) 3564, 4391
XmnI GAANNNNTTC 3 cut(s) 272, 1126, 4764
ZraI GACGTC 1 cut(s) 5068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.