Rroxscaffold_5G00386380

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000223
Physical Location & Seq
Forward (+)
65270546 .. 65271707
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386380.1

Sequence Viewer

Length: 822 bp
ATGGGGTATGATATACTCCTAGATCTACTGTGTAGGGAAGATATCACTGAACAACTCCCAAAGGATTTTTACGATGCCTTGAGGAGAATGCATAAATGTTCTCTTAATGTAAATGTGAATGCTCTCGCTAAAGCTTTTAAGAAGATTGGTCATGATTTGGTGGTTGCAAGTTTTGGGGTTGATTGTTCAAGGTTCTTTTGTCCAGATTCCATTTATGTAGAGATGGAGGCCACCCTATGCAGTAATAAGATACTTAGAATATTGTTTCAAAGACCACATATTCTTGTTCAATATTCCCAAGGTCAAACTATTATTGGGGAAGCTTGCAGTCCTGTTCCTTCTGCTTATGATTCGGAGGAGACCAAGGTTATTGAGAGTCCTAAGCTTCTTCTACCCAACTCTGGTGTGGTGGAAGATGAGGTCCAACACACTGGAAACAGTAACAAAGTGACCTTCCAATGGGTTTTGATGCTTTGTGGGACAAATTTGAAAGTTTTAAGTTGGTGGAGAAGGATGGTCAGAGGAGTTTACTTTCAGATGCCTCAGCATTTAAGCTTTCCAAATGCTGTTGACAGAAAAGAACAAATAGTATCTCGAGAAGTGCTGAGCATGCTTGATGAGTTGATGCAACTTTATGCGGCCTTACATGGCAGTGAAAAGGAACTTGGGAACAAAATGTCTACCGTTGCAAATCTTTCTGCGAAGTTGCAAGTGAGGAGGCAAAGAATGGAGCCTATGTTTTTTTGGCCAGAGAAAAGGGAGGCCTATCTACAAGATCATCTACAGGATGCGGCTGCTACTGGAACACAAACCGGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

273

Amino Acids

31.12

Weight (kDa)

6.39

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 680
AciI CCGC 2 cut(s) 638, 791
AcoI YGGCCR 1 cut(s) 746
AcsI RAATTY 1 cut(s) 484
AfiI CCNNNNNNNGG 2 cut(s) 401, 459
AgsI TTSAA 4 cut(s) 189, 269, 290, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 648, 680
AluBI AGCT 5 cut(s) 134, 323, 385, 555, 819
AluI AGCT 5 cut(s) 134, 323, 385, 555, 819
Alw26I GTCTC 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 594
AoxI GGCC 4 cut(s) 228, 639, 746, 762
ApeKI GCWGC 2 cut(s) 794, 816
ApoI RAATTY 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 594
AvaII GGWCC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 748
BbvCI CCTCAGC 1 cut(s) 543
BbvI GCAGC 1 cut(s) 781
BccI CCATC 2 cut(s) 217, 508
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 2 cut(s) 20, 820
BfmI CTRYAG 1 cut(s) 782
BglII AGATCT 1 cut(s) 22
BisI GCNGC 4 cut(s) 639, 792, 795, 817
BlpI GCTNAGC 1 cut(s) 605
BlsI GCNGC 4 cut(s) 640, 793, 796, 818
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 732
BmsI GCATC 5 cut(s) 64, 459, 528, 615, 778
Bpu10I CCTNAGC 2 cut(s) 381, 543
Bpu1102I GCTNAGC 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 298, 363
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 459
Bse118I RCCGGY 1 cut(s) 812
Bse1I ACTGG 2 cut(s) 436, 805
BseDI CCNNGG 2 cut(s) 298, 363
BseGI GGATG 2 cut(s) 519, 793
BseLI CCNNNNNNNGG 2 cut(s) 401, 459
BseMII CTCAG 2 cut(s) 557, 596
BseNI ACTGG 2 cut(s) 436, 805
BseRI GAGGAG 4 cut(s) 97, 371, 537, 730
BseXI GCAGC 1 cut(s) 781
BshFI GGCC 4 cut(s) 230, 641, 748, 764
BsiHKCI CYCGRG 1 cut(s) 594
BsiSI CCGG 1 cut(s) 813
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 2 cut(s) 401, 459
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 2 cut(s) 93, 124
BsnI GGCC 4 cut(s) 230, 641, 748, 764
Bso31I GGTCTC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 594
Bsp143I GATC 2 cut(s) 22, 775
Bsp1720I GCTNAGC 1 cut(s) 605
BspACI CCGC 2 cut(s) 638, 791
BspANI GGCC 4 cut(s) 230, 641, 748, 764
BspCNI CTCAG 2 cut(s) 556, 597
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 732
BspTNI GGTCTC 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 812
BsrI ACTGG 2 cut(s) 436, 805
BssAI RCCGGY 1 cut(s) 812
BssECI CCNNGG 2 cut(s) 298, 363
BssMI GATC 2 cut(s) 22, 775
BssT1I CCWWGG 2 cut(s) 298, 363
Bst4CI ACNGT 3 cut(s) 30, 440, 685
BstC8I GCNNGC 2 cut(s) 325, 611
BstDEI CTNAG 4 cut(s) 254, 381, 543, 605
BstF5I GGATG 2 cut(s) 519, 793
BstKTI GATC 2 cut(s) 25, 778
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 2 cut(s) 22, 775
BstMWI GCNNNNNNNGC 1 cut(s) 610
BstNSI RCATGY 1 cut(s) 613
BstSFI CTRYAG 1 cut(s) 782
BstV1I GCAGC 1 cut(s) 781
BstX2I RGATCY 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 431
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 4 cut(s) 230, 641, 748, 764
BtsCI GGATG 2 cut(s) 519, 793
BtsI GCAGTG 1 cut(s) 658
BtsIMutI CAGTG 3 cut(s) 45, 429, 658
Cac8I GCNNGC 2 cut(s) 325, 611
CciI TCATGA 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 812
Cfr13I GGNCC 1 cut(s) 421
CviAII CATG 3 cut(s) 152, 610, 647
DdeI CTNAG 4 cut(s) 254, 381, 543, 605
DpnI GATC 2 cut(s) 24, 777
DpnII GATC 2 cut(s) 22, 775
EaeI YGGCCR 1 cut(s) 746
Eco130I CCWWGG 2 cut(s) 298, 363
Eco147I AGGCCT 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 421
Eco88I CYCGRG 1 cut(s) 594
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 2 cut(s) 298, 363
EcoT22I ATGCAT 1 cut(s) 93
ErhI CCWWGG 2 cut(s) 298, 363
FaeI CATG 3 cut(s) 155, 613, 650
FaqI GGGAC 1 cut(s) 493
FatI CATG 3 cut(s) 151, 609, 646
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 4 cut(s) 639, 792, 795, 817
FokI GGATG 2 cut(s) 526, 800
Fsp4HI GCNGC 4 cut(s) 639, 792, 795, 817
FspBI CTAG 2 cut(s) 20, 820
GluI GCNGC 4 cut(s) 639, 792, 795, 817
HaeIII GGCC 4 cut(s) 230, 641, 748, 764
HapII CCGG 1 cut(s) 813
Hin1II CATG 3 cut(s) 155, 613, 650
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 4 cut(s) 132, 321, 383, 553
HinfI GANTC 3 cut(s) 206, 350, 376
HpaII CCGG 1 cut(s) 813
Hpy166II GTNNAC 3 cut(s) 529, 571, 681
Hpy188I TCNGA 3 cut(s) 355, 521, 537
Hpy188III TCNNGA 4 cut(s) 152, 203, 594, 596
Hpy8I GTNNAC 3 cut(s) 529, 571, 681
HpyAV CCTTC 3 cut(s) 348, 463, 504
HpyCH4III ACNGT 3 cut(s) 30, 440, 685
HpyCH4V TGCA 7 cut(s) 91, 167, 240, 327, 628, 689, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 610
HpyF3I CTNAG 4 cut(s) 254, 381, 543, 605
Hsp92II CATG 3 cut(s) 155, 613, 650
Kzo9I GATC 2 cut(s) 22, 775
LmnI GCTCC 1 cut(s) 730
LpnPI CCDG 7 cut(s) 216, 345, 387, 417, 762, 770, 786
Lsp1109I GCAGC 1 cut(s) 781
LweI GCATC 5 cut(s) 64, 459, 528, 615, 778
MaeI CTAG 2 cut(s) 20, 820
MaeIII GTNAC 2 cut(s) 440, 448
MalI GATC 2 cut(s) 24, 777
MboI GATC 2 cut(s) 22, 775
MboII GAAGA 4 cut(s) 50, 154, 380, 425
MflI RGATCY 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 748
MluCI AATT 1 cut(s) 484
MluNI TGGCCA 1 cut(s) 748
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 9 cut(s) 75, 220, 349, 412, 515, 552, 708, 711, 754
Mox20I TGGCCA 1 cut(s) 748
Mph1103I ATGCAT 1 cut(s) 93
MscI TGGCCA 1 cut(s) 748
MseI TTAA 4 cut(s) 105, 138, 497, 551
MslI CAYNNNNRTG 1 cut(s) 651
Msp20I TGGCCA 1 cut(s) 748
MspI CCGG 1 cut(s) 813
Mva1269I GAATGC 2 cut(s) 93, 124
MwoI GCNNNNNNNGC 1 cut(s) 610
NdeII GATC 2 cut(s) 22, 775
NlaIII CATG 3 cut(s) 155, 613, 650
NlaIV GGNNCC 1 cut(s) 732
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 93
NspI RCATGY 1 cut(s) 613
PaeI GCATGC 1 cut(s) 613
PaeR7I CTCGAG 1 cut(s) 594
PagI TCATGA 1 cut(s) 151
PceI AGGCCT 1 cut(s) 764
PctI GAATGC 2 cut(s) 93, 124
PfeI GAWTC 2 cut(s) 206, 350
PkrI GCNGC 4 cut(s) 640, 793, 796, 818
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 732
PspPI GGNCC 1 cut(s) 421
PsuI RGATCY 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 4 cut(s) 105, 138, 497, 551
SatI GCNGC 4 cut(s) 639, 792, 795, 817
Sau3AI GATC 2 cut(s) 22, 775
Sau96I GGNCC 1 cut(s) 421
SchI GAGTC 1 cut(s) 385
SfaNI GCATC 5 cut(s) 64, 459, 528, 615, 778
SfcI CTRYAG 1 cut(s) 782
Sfr274I CTCGAG 1 cut(s) 594
SinI GGWCC 1 cut(s) 421
SlaI CTCGAG 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 2 cut(s) 79, 594
SmoI CTYRAG 2 cut(s) 79, 594
SphI GCATGC 1 cut(s) 613
Sse9I AATT 1 cut(s) 484
SseBI AGGCCT 1 cut(s) 764
SsiI CCGC 2 cut(s) 638, 791
SspI AATATT 2 cut(s) 261, 293
SspMI CTAG 2 cut(s) 20, 820
StuI AGGCCT 1 cut(s) 764
StyI CCWWGG 2 cut(s) 298, 363
TaaI ACNGT 3 cut(s) 30, 440, 685
TaqI TCGA 1 cut(s) 595
TasI AATT 1 cut(s) 484
TauI GCSGC 2 cut(s) 641, 794
TfiI GAWTC 2 cut(s) 206, 350
Tru1I TTAA 4 cut(s) 105, 138, 497, 551
Tru9I TTAA 4 cut(s) 105, 138, 497, 551
TscAI CASTG 3 cut(s) 52, 436, 658
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 794, 816
Tsp45I GTSAC 1 cut(s) 448
TspRI CASTG 3 cut(s) 52, 436, 658
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 594
XmiI GTMKAC 1 cut(s) 680
XspI CTAG 2 cut(s) 20, 820
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.