TPR and ankyrin repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF6469 | PF20073 | 78 - 206 | 2.6e-63 | Domain of unknown function (DUF6469) |
| AAA_11 | PF13086 | 244 - 616 | 2.1e-34 | AAA domain |
| AAA_12 | PF13087 | 624 - 820 | 5.7e-56 | AAA domain |
| UvrD-helicase | PF00580 | 1328 - 1417 | 9.5e-08 | UvrD/REP helicase N-terminal domain |
| UvrD_C | PF13361 | 1551 - 1635 | 3.2e-06 | UvrD-like helicase C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2072, 2345 |
| AarI | CACCTGC | 1 cut(s) | 4579 |
| Acc16I | TGCGCA | 2 cut(s) | 2232, 5557 |
| Acc36I | ACCTGC | 3 cut(s) | 2871, 4579, 5762 |
| AccB1I | GGYRCC | 1 cut(s) | 3357 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1100, 1393, 2748 |
| AccBSI | CCGCTC | 1 cut(s) | 5333 |
| AccI | GTMKAC | 2 cut(s) | 1377, 6186 |
| AccII | CGCG | 1 cut(s) | 7248 |
| AciI | CCGC | 7 cut(s) | 2161, 2701, 2932, 3528, 5333, 5354, 5712 |
| AclI | AACGTT | 1 cut(s) | 5928 |
| AclWI | GGATC | 7 cut(s) | 1984, 2355, 2908, 3066, 5188, 6833, 7387 |
| AcoI | YGGCCR | 5 cut(s) | 441, 3736, 5076, 7608, 7732 |
| AcyI | GRCGYC | 1 cut(s) | 7201 |
| AflII | CTTAAG | 1 cut(s) | 5729 |
| AflIII | ACRYGT | 1 cut(s) | 603 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3465, 6802 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3354, 3386, 3597, 3629, 4295, 4327 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1166, 1198 |
| Alw21I | GWGCWC | 7 cut(s) | 232, 901, 1249, 4618, 6873, 7506, 7516 |
| AlwI | GGATC | 7 cut(s) | 1984, 2355, 2908, 3066, 5188, 6833, 7387 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 3308, 3428, 5243, 6646 |
| Ama87I | CYCGRG | 3 cut(s) | 189, 5037, 6842 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3011, 3043, 5885, 5917 |
| AseI | ATTAAT | 2 cut(s) | 2973, 5463 |
| Asp700I | GAANNNNTTC | 9 cut(s) | 120, 132, 665, 996, 2467, 2678, 4362, 5612, 6920 |
| AspLEI | GCGC | 5 cut(s) | 2233, 3447, 5558, 5948, 7083 |
| AsuC2I | CCSGG | 5 cut(s) | 357, 1994, 3049, 3944, 3974 |
| AvaI | CYCGRG | 3 cut(s) | 189, 5037, 6842 |
| AvaII | GGWCC | 7 cut(s) | 69, 815, 2057, 2111, 2500, 5491, 6343 |
| BaeGI | GKGCMC | 1 cut(s) | 1506 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 4418, 4451, 6250, 6283 |
| BalI | TGGCCA | 2 cut(s) | 3738, 5078 |
| BanI | GGYRCC | 1 cut(s) | 3357 |
| BanII | GRGCYC | 3 cut(s) | 6559, 6873, 7516 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4071, 4103 |
| BauI | CACGAG | 1 cut(s) | 7378 |
| BbsI | GAAGAC | 4 cut(s) | 2550, 4693, 4923, 6072 |
| Bbv12I | GWGCWC | 7 cut(s) | 232, 901, 1249, 4618, 6873, 7506, 7516 |
| BceAI | ACGGC | 5 cut(s) | 782, 1047, 1303, 3741, 7623 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 137, 171, 1662, 1696 |
| BclI | TGATCA | 1 cut(s) | 6834 |
| BcnI | CCSGG | 5 cut(s) | 357, 1994, 3049, 3944, 3974 |
| BfmI | CTRYAG | 7 cut(s) | 869, 3382, 3420, 3915, 5373, 6234, 6638 |
| BfoI | RGCGCY | 1 cut(s) | 7084 |
| BfrI | CTTAAG | 1 cut(s) | 5729 |
| BfuAI | ACCTGC | 3 cut(s) | 2871, 4579, 5762 |
| BglII | AGATCT | 5 cut(s) | 2886, 4159, 6124, 6367, 6944 |
| BlpI | GCTNAGC | 1 cut(s) | 144 |
| BmcAI | AGTACT | 1 cut(s) | 6088 |
| Bme18I | GGWCC | 7 cut(s) | 69, 815, 2057, 2111, 2500, 5491, 6343 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3465, 6802 |
| BmeT110I | CYCGRG | 3 cut(s) | 189, 5037, 6842 |
| BmrI | ACTGGG | 5 cut(s) | 756, 2109, 3318, 5122, 6672 |
| BmuI | ACTGGG | 5 cut(s) | 756, 2109, 3318, 5122, 6672 |
| BoxI | GACNNNNGTC | 2 cut(s) | 928, 2696 |
| BpiI | GAAGAC | 4 cut(s) | 2550, 4693, 4923, 6072 |
| BpmI | CTGGAG | 6 cut(s) | 95, 3245, 4485, 6237, 7048, 7530 |
| Bpu10I | CCTNAGC | 3 cut(s) | 3471, 3907, 5499 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 144 |
| BpuEI | CTTGAG | 6 cut(s) | 225, 1160, 1233, 1425, 4085, 4706 |
| BpuMI | CCSGG | 5 cut(s) | 357, 1994, 3049, 3944, 3974 |
| Bsa29I | ATCGAT | 1 cut(s) | 5192 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3003, 4089 |
| BsaHI | GRCGYC | 1 cut(s) | 7201 |
| BsaI | GGTCTC | 2 cut(s) | 2746, 6412 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 6114, 6144 |
| Bse3DI | GCAATG | 6 cut(s) | 1111, 1320, 1710, 2055, 5007, 6837 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3003, 4089 |
| BseCI | ATCGAT | 1 cut(s) | 5192 |
| BseJI | GATNNNNATC | 2 cut(s) | 3003, 4089 |
| BseMI | GCAATG | 6 cut(s) | 1111, 1320, 1710, 2055, 5007, 6837 |
| BseMII | CTCAG | 9 cut(s) | 158, 2215, 3092, 3952, 5418, 5940, 6455, 6858, 7531 |
| BseRI | GAGGAG | 6 cut(s) | 2108, 2924, 3593, 5039, 5526, 5894 |
| BseSI | GKGCMC | 1 cut(s) | 1506 |
| BseYI | CCCAGC | 3 cut(s) | 3179, 5724, 7405 |
| BsgI | GTGCAG | 3 cut(s) | 1725, 4602, 6571 |
| Bsh1236I | CGCG | 1 cut(s) | 7248 |
| BshNI | GGYRCC | 1 cut(s) | 3357 |
| BshVI | ATCGAT | 1 cut(s) | 5192 |
| BsiHKAI | GWGCWC | 7 cut(s) | 232, 901, 1249, 4618, 6873, 7506, 7516 |
| BsiHKCI | CYCGRG | 3 cut(s) | 189, 5037, 6842 |
| BsiSI | CCGG | 8 cut(s) | 357, 1993, 3049, 3943, 3973, 5136, 6985, 7735 |
| BsiWI | CGTACG | 1 cut(s) | 2356 |
| BslFI | GGGAC | 6 cut(s) | 55, 437, 724, 2906, 3309, 6329 |
| BsmFI | GGGAC | 6 cut(s) | 55, 437, 724, 2906, 3309, 6329 |
| BsmI | GAATGC | 7 cut(s) | 202, 778, 1238, 1944, 3088, 5363, 6136 |
| Bso31I | GGTCTC | 2 cut(s) | 2746, 6412 |
| BsoBI | CYCGRG | 3 cut(s) | 189, 5037, 6842 |
| Bsp1286I | GDGCHC | 9 cut(s) | 232, 901, 1249, 1506, 4618, 6559, 6873, 7506, 7516 |
| Bsp1407I | TGTACA | 3 cut(s) | 2169, 2829, 6271 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 144 |
| Bsp19I | CCATGG | 5 cut(s) | 651, 1162, 6911, 7185, 7436 |
| Bsp68I | TCGCGA | 1 cut(s) | 7248 |
| BspACI | CCGC | 7 cut(s) | 2161, 2701, 2932, 3528, 5333, 5354, 5712 |
| BspCNI | CTCAG | 9 cut(s) | 157, 2214, 3091, 3951, 5417, 5941, 6454, 6859, 7530 |
| BspDI | ATCGAT | 1 cut(s) | 5192 |
| BspFNI | CGCG | 1 cut(s) | 7248 |
| BspHI | TCATGA | 3 cut(s) | 4539, 5056, 5592 |
| BspMAI | CTGCAG | 2 cut(s) | 3424, 5377 |
| BspMI | ACCTGC | 3 cut(s) | 2871, 4579, 5762 |
| BspPI | GGATC | 7 cut(s) | 1984, 2355, 2908, 3066, 5188, 6833, 7387 |
| BspQI | GCTCTTC | 1 cut(s) | 2797 |
| BspT107I | GGYRCC | 1 cut(s) | 3357 |
| BspTI | CTTAAG | 1 cut(s) | 5729 |
| BspTNI | GGTCTC | 2 cut(s) | 2746, 6412 |
| BsrBI | CCGCTC | 1 cut(s) | 5333 |
| BsrDI | GCAATG | 6 cut(s) | 1111, 1320, 1710, 2055, 5007, 6837 |
| BsrGI | TGTACA | 3 cut(s) | 2169, 2829, 6271 |
| BssNI | GRCGYC | 1 cut(s) | 7201 |
| BssSI | CACGAG | 1 cut(s) | 7378 |
| Bst2BI | CACGAG | 1 cut(s) | 7378 |
| BstACI | GRCGYC | 1 cut(s) | 7201 |
| BstAFI | CTTAAG | 1 cut(s) | 5729 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 236 |
| BstAUI | TGTACA | 3 cut(s) | 2169, 2829, 6271 |
| BstDSI | CCRYGG | 5 cut(s) | 651, 1162, 6911, 7185, 7436 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 5765 |
| BstFNI | CGCG | 1 cut(s) | 7248 |
| BstH2I | RGCGCY | 1 cut(s) | 7084 |
| BstHHI | GCGC | 5 cut(s) | 2233, 3447, 5558, 5948, 7083 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 236, 758, 1310, 1868, 3083, 3920, 4972, 5720 |
| BstNSI | RCATGY | 7 cut(s) | 607, 1799, 3525, 3927, 4652, 5483, 6785 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 928, 2696 |
| BstSFI | CTRYAG | 7 cut(s) | 869, 3382, 3420, 3915, 5373, 6234, 6638 |
| BstSLI | GKGCMC | 1 cut(s) | 1506 |
| BstUI | CGCG | 1 cut(s) | 7248 |
| BstV2I | GAAGAC | 4 cut(s) | 2550, 4693, 4923, 6072 |
| BstX2I | RGATCY | 7 cut(s) | 2886, 2913, 3058, 4159, 6124, 6367, 6944 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3024, 5028 |
| BstYI | RGATCY | 7 cut(s) | 2886, 2913, 3058, 4159, 6124, 6367, 6944 |
| Bsu15I | ATCGAT | 1 cut(s) | 5192 |
| BsuTUI | ATCGAT | 1 cut(s) | 5192 |
| BtgI | CCRYGG | 5 cut(s) | 651, 1162, 6911, 7185, 7436 |
| BtgZI | GCGATG | 1 cut(s) | 5704 |
| BtsI | GCAGTG | 3 cut(s) | 759, 1668, 5792 |
| BtuMI | TCGCGA | 1 cut(s) | 7248 |
| BveI | ACCTGC | 3 cut(s) | 2871, 4579, 5762 |
| CaiI | CAGNNNCTG | 4 cut(s) | 3308, 3428, 5243, 6646 |
| CciI | TCATGA | 3 cut(s) | 4539, 5056, 5592 |
| CfoI | GCGC | 5 cut(s) | 2233, 3447, 5558, 5948, 7083 |
| ClaI | ATCGAT | 1 cut(s) | 5192 |
| CseI | GACGC | 4 cut(s) | 918, 1293, 5378, 7190 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 4989, 5024, 7314, 7349 |
| DraI | TTTAAA | 5 cut(s) | 1923, 4189, 4467, 5782, 7491 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3465, 6802 |
| EaeI | YGGCCR | 5 cut(s) | 441, 3736, 5076, 7608, 7732 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3465, 6802 |
| EciI | GGCGGA | 1 cut(s) | 3543 |
| Ecl136II | GAGCTC | 2 cut(s) | 6871, 7514 |
| Eco147I | AGGCCT | 4 cut(s) | 4347, 5789, 6920, 7001 |
| Eco24I | GRGCYC | 3 cut(s) | 6559, 6873, 7516 |
| Eco31I | GGTCTC | 2 cut(s) | 2746, 6412 |
| Eco32I | GATATC | 1 cut(s) | 3601 |
| Eco47I | GGWCC | 7 cut(s) | 69, 815, 2057, 2111, 2500, 5491, 6343 |
| Eco53kI | GAGCTC | 2 cut(s) | 6871, 7514 |
| Eco88I | CYCGRG | 3 cut(s) | 189, 5037, 6842 |
| EcoICRI | GAGCTC | 2 cut(s) | 6871, 7514 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 5765 |
| EcoO109I | RGGNCCY | 2 cut(s) | 815, 4681 |
| EcoRI | GAATTC | 4 cut(s) | 2384, 3127, 6526, 6703 |
| EcoRV | GATATC | 1 cut(s) | 3601 |
| EcoT22I | ATGCAT | 2 cut(s) | 1944, 3925 |
| EcoT38I | GRGCYC | 3 cut(s) | 6559, 6873, 7516 |
| FaqI | GGGAC | 6 cut(s) | 55, 437, 724, 2906, 3309, 6329 |
| FauNDI | CATATG | 2 cut(s) | 271, 4194 |
| FbaI | TGATCA | 1 cut(s) | 6834 |
| FblI | GTMKAC | 2 cut(s) | 1377, 6186 |
| FriOI | GRGCYC | 3 cut(s) | 6559, 6873, 7516 |
| FspI | TGCGCA | 2 cut(s) | 2232, 5557 |
| GlaI | GCGC | 5 cut(s) | 2232, 3446, 5557, 5947, 7082 |
| GsaI | CCCAGC | 3 cut(s) | 3183, 5728, 7409 |
| GsuI | CTGGAG | 6 cut(s) | 95, 3245, 4485, 6237, 7048, 7530 |
| HaeII | RGCGCY | 1 cut(s) | 7084 |
| HapII | CCGG | 8 cut(s) | 357, 1993, 3049, 3943, 3973, 5136, 6985, 7735 |
| HgaI | GACGC | 4 cut(s) | 918, 1293, 5378, 7190 |
| HhaI | GCGC | 5 cut(s) | 2233, 3447, 5558, 5948, 7083 |
| Hin1I | GRCGYC | 1 cut(s) | 7201 |
| Hin6I | GCGC | 5 cut(s) | 2231, 3445, 5556, 5946, 7081 |
| HinP1I | GCGC | 5 cut(s) | 2231, 3445, 5556, 5946, 7081 |
| HincII | GTYRAC | 4 cut(s) | 1595, 1764, 4371, 7600 |
| HindII | GTYRAC | 4 cut(s) | 1595, 1764, 4371, 7600 |
| HindIII | AAGCTT | 9 cut(s) | 1461, 1876, 2276, 2735, 3854, 5130, 5610, 6494, 6893 |
| HpaII | CCGG | 8 cut(s) | 357, 1993, 3049, 3943, 3973, 5136, 6985, 7735 |
| Hpy99I | CGWCG | 3 cut(s) | 2523, 4098, 4623 |
| HpyCH4IV | ACGT | 4 cut(s) | 1819, 2871, 5928, 7180 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 236, 758, 1310, 1868, 3083, 3920, 4972, 5720 |
| HpySE526I | ACGT | 4 cut(s) | 1819, 2871, 5928, 7180 |
| Hsp92I | GRCGYC | 1 cut(s) | 7201 |
| HspAI | GCGC | 5 cut(s) | 2231, 3445, 5556, 5946, 7081 |
| Ksp22I | TGATCA | 1 cut(s) | 6834 |
| LguI | GCTCTTC | 1 cut(s) | 2797 |
| MaeII | ACGT | 4 cut(s) | 1819, 2871, 5928, 7180 |
| MbiI | CCGCTC | 1 cut(s) | 5333 |
| MflI | RGATCY | 7 cut(s) | 2886, 2913, 3058, 4159, 6124, 6367, 6944 |
| MhlI | GDGCHC | 9 cut(s) | 232, 901, 1249, 1506, 4618, 6559, 6873, 7506, 7516 |
| MlsI | TGGCCA | 2 cut(s) | 3738, 5078 |
| MluNI | TGGCCA | 2 cut(s) | 3738, 5078 |
| MmeI | TCCRAC | 7 cut(s) | 926, 1085, 2099, 2388, 2729, 3228, 7065 |
| Mox20I | TGGCCA | 2 cut(s) | 3738, 5078 |
| Mph1103I | ATGCAT | 2 cut(s) | 1944, 3925 |
| MroXI | GAANNNNTTC | 9 cut(s) | 120, 132, 665, 996, 2467, 2678, 4362, 5612, 6920 |
| MscI | TGGCCA | 2 cut(s) | 3738, 5078 |
| MslI | CAYNNNNRTG | 4 cut(s) | 783, 1337, 1488, 5067 |
| Msp20I | TGGCCA | 2 cut(s) | 3738, 5078 |
| MspCI | CTTAAG | 1 cut(s) | 5729 |
| MspI | CCGG | 8 cut(s) | 357, 1993, 3049, 3943, 3973, 5136, 6985, 7735 |
| MssI | GTTTAAAC | 1 cut(s) | 4189 |
| Mva1269I | GAATGC | 7 cut(s) | 202, 778, 1238, 1944, 3088, 5363, 6136 |
| MvnI | CGCG | 1 cut(s) | 7248 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 236, 758, 1310, 1868, 3083, 3920, 4972, 5720 |
| NciI | CCSGG | 5 cut(s) | 357, 1994, 3049, 3944, 3974 |
| NcoI | CCATGG | 5 cut(s) | 651, 1162, 6911, 7185, 7436 |
| NdeI | CATATG | 2 cut(s) | 271, 4194 |
| NmuCI | GTSAC | 9 cut(s) | 2660, 3027, 3095, 3457, 3721, 5102, 5823, 7189, 7420 |
| NruI | TCGCGA | 1 cut(s) | 7248 |
| NsbI | TGCGCA | 2 cut(s) | 2232, 5557 |
| NsiI | ATGCAT | 2 cut(s) | 1944, 3925 |
| NspI | RCATGY | 7 cut(s) | 607, 1799, 3525, 3927, 4652, 5483, 6785 |
| PaeI | GCATGC | 3 cut(s) | 1799, 4652, 5483 |
| PagI | TCATGA | 3 cut(s) | 4539, 5056, 5592 |
| PaqCI | CACCTGC | 1 cut(s) | 4579 |
| PceI | AGGCCT | 4 cut(s) | 4347, 5789, 6920, 7001 |
| PciI | ACATGT | 1 cut(s) | 603 |
| PciSI | GCTCTTC | 1 cut(s) | 2797 |
| PctI | GAATGC | 7 cut(s) | 202, 778, 1238, 1944, 3088, 5363, 6136 |
| PdmI | GAANNNNTTC | 9 cut(s) | 120, 132, 665, 996, 2467, 2678, 4362, 5612, 6920 |
| Pfl23II | CGTACG | 1 cut(s) | 2356 |
| PflFI | GACNNNGTC | 2 cut(s) | 2115, 2498 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1100, 1393, 2748 |
| PfoI | TCCNGGA | 3 cut(s) | 1992, 2041, 3047 |
| PmeI | GTTTAAAC | 1 cut(s) | 4189 |
| PpuMI | RGGWCCY | 1 cut(s) | 815 |
| PscI | ACATGT | 1 cut(s) | 603 |
| PshAI | GACNNNNGTC | 2 cut(s) | 928, 2696 |
| PshBI | ATTAAT | 2 cut(s) | 2973, 5463 |
| PsiI | TTATAA | 2 cut(s) | 2072, 2345 |
| Psp124BI | GAGCTC | 2 cut(s) | 6873, 7516 |
| Psp1406I | AACGTT | 1 cut(s) | 5928 |
| Psp5II | RGGWCCY | 1 cut(s) | 815 |
| PspFI | CCCAGC | 3 cut(s) | 3179, 5724, 7405 |
| PspLI | CGTACG | 1 cut(s) | 2356 |
| PspPPI | RGGWCCY | 1 cut(s) | 815 |
| PsrI | GAACNNNNNNTAC | 6 cut(s) | 1809, 1841, 2852, 2884, 4764, 4796 |
| PstI | CTGCAG | 2 cut(s) | 3424, 5377 |
| PstNI | CAGNNNCTG | 4 cut(s) | 3308, 3428, 5243, 6646 |
| PsuI | RGATCY | 7 cut(s) | 2886, 2913, 3058, 4159, 6124, 6367, 6944 |
| PsyI | GACNNNGTC | 2 cut(s) | 2115, 2498 |
| RruI | TCGCGA | 1 cut(s) | 7248 |
| RseI | CAYNNNNRTG | 4 cut(s) | 783, 1337, 1488, 5067 |
| SacI | GAGCTC | 2 cut(s) | 6873, 7516 |
| SapI | GCTCTTC | 1 cut(s) | 2797 |
| ScaI | AGTACT | 1 cut(s) | 6088 |
| SduI | GDGCHC | 9 cut(s) | 232, 901, 1249, 1506, 4618, 6559, 6873, 7506, 7516 |
| SfcI | CTRYAG | 7 cut(s) | 869, 3382, 3420, 3915, 5373, 6234, 6638 |
| SinI | GGWCC | 7 cut(s) | 69, 815, 2057, 2111, 2500, 5491, 6343 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 783, 1337, 1488, 5067 |
| SmlI | CTYRAG | 7 cut(s) | 240, 1139, 1248, 1440, 4100, 4685, 5729 |
| SmoI | CTYRAG | 7 cut(s) | 240, 1139, 1248, 1440, 4100, 4685, 5729 |
| SphI | GCATGC | 3 cut(s) | 1799, 4652, 5483 |
| SseBI | AGGCCT | 4 cut(s) | 4347, 5789, 6920, 7001 |
| SsiI | CCGC | 7 cut(s) | 2161, 2701, 2932, 3528, 5333, 5354, 5712 |
| SspI | AATATT | 4 cut(s) | 1328, 3622, 5217, 5628 |
| SstI | GAGCTC | 2 cut(s) | 6873, 7516 |
| StuI | AGGCCT | 4 cut(s) | 4347, 5789, 6920, 7001 |
| TaiI | ACGT | 4 cut(s) | 1822, 2874, 5931, 7183 |
| TaqII | GACCGA | 1 cut(s) | 147 |
| TatI | WGTACW | 6 cut(s) | 1346, 2169, 2829, 2957, 6086, 6271 |
| TauI | GCSGC | 2 cut(s) | 5336, 5714 |
| TseFI | GTSAC | 9 cut(s) | 2660, 3027, 3095, 3457, 3721, 5102, 5823, 7189, 7420 |
| Tsp45I | GTSAC | 9 cut(s) | 2660, 3027, 3095, 3457, 3721, 5102, 5823, 7189, 7420 |
| TspGWI | ACGGA | 4 cut(s) | 563, 2049, 3160, 4373 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2115, 2498 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1100, 1393, 2748 |
| Vha464I | CTTAAG | 1 cut(s) | 5729 |
| VpaK11BI | GGWCC | 7 cut(s) | 69, 815, 2057, 2111, 2500, 5491, 6343 |
| VspI | ATTAAT | 2 cut(s) | 2973, 5463 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 5765 |
| XbaI | TCTAGA | 3 cut(s) | 2905, 3007, 6155 |
| XceI | RCATGY | 7 cut(s) | 607, 1799, 3525, 3927, 4652, 5483, 6785 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 348, 1101 |
| XmiI | GTMKAC | 2 cut(s) | 1377, 6186 |
| XmnI | GAANNNNTTC | 9 cut(s) | 120, 132, 665, 996, 2467, 2678, 4362, 5612, 6920 |
| ZrmI | AGTACT | 1 cut(s) | 6088 |
| Zsp2I | ATGCAT | 2 cut(s) | 1944, 3925 |