TPR and ankyrin repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 3062 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2023, 3283 |
| AccI | GTMKAC | 3 cut(s) | 824, 1545, 2381 |
| AciI | CCGC | 4 cut(s) | 1266, 1742, 2191, 2652 |
| AclI | AACGTT | 1 cut(s) | 2442 |
| AclWI | GGATC | 5 cut(s) | 348, 1095, 2014, 2385, 3261 |
| AcoI | YGGCCR | 3 cut(s) | 2586, 3053, 3564 |
| AcuI | CTGAAG | 6 cut(s) | 662, 972, 1005, 1509, 1589, 2723 |
| AcyI | GRCGYC | 1 cut(s) | 3059 |
| AfaI | GTAC | 7 cut(s) | 74, 1378, 1565, 2201, 2300, 2682, 3310 |
| AflIII | ACRYGT | 2 cut(s) | 627, 3520 |
| AhlI | ACTAGT | 1 cut(s) | 2807 |
| AjnI | CCWGG | 8 cut(s) | 81, 334, 850, 1116, 1813, 2022, 2071, 3276 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1881, 1913 |
| Alw21I | GWGCWC | 4 cut(s) | 205, 557, 668, 1928 |
| Alw26I | GTCTC | 2 cut(s) | 485, 2776 |
| Alw44I | GTGCAC | 1 cut(s) | 664 |
| AlwI | GGATC | 5 cut(s) | 348, 1095, 2014, 2385, 3261 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 494, 950, 2023 |
| Ama87I | CYCGRG | 1 cut(s) | 1535 |
| AoxI | GGCC | 8 cut(s) | 789, 1120, 2457, 2586, 2815, 3053, 3564, 3850 |
| ApaI | GGGCCC | 2 cut(s) | 1124, 2461 |
| ApaLI | GTGCAC | 1 cut(s) | 664 |
| ApeKI | GCWGC | 5 cut(s) | 1720, 1769, 2258, 2270, 3006 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 161, 193 |
| AseI | ATTAAT | 1 cut(s) | 2103 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2708, 2799, 3559 |
| AsuC2I | CCSGG | 2 cut(s) | 1124, 2461 |
| AsuHPI | GGTGA | 9 cut(s) | 532, 991, 1082, 1138, 1250, 1256, 1853, 2341, 3041 |
| AvaI | CYCGRG | 1 cut(s) | 1535 |
| AvaII | GGWCC | 4 cut(s) | 132, 845, 1275, 2087 |
| BaeGI | GKGCMC | 5 cut(s) | 668, 931, 1124, 1536, 2461 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 399, 432 |
| BalI | TGGCCA | 1 cut(s) | 2588 |
| BanII | GRGCYC | 3 cut(s) | 1124, 1928, 2461 |
| BauI | CACGAG | 1 cut(s) | 162 |
| BbsI | GAAGAC | 4 cut(s) | 57, 1143, 2339, 3347 |
| Bbv12I | GWGCWC | 4 cut(s) | 205, 557, 668, 1928 |
| BbvI | GCAGC | 5 cut(s) | 1707, 1756, 2257, 2270, 2993 |
| BceAI | ACGGC | 1 cut(s) | 1814 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1692, 1726, 1751, 1785, 1786, 1820 |
| BciT130I | CCWGG | 8 cut(s) | 83, 336, 852, 1118, 1815, 2024, 2073, 3278 |
| BciVI | GTATCC | 1 cut(s) | 19 |
| BclI | TGATCA | 1 cut(s) | 594 |
| BcnI | CCSGG | 2 cut(s) | 1124, 2461 |
| BcoDI | GTCTC | 2 cut(s) | 485, 2776 |
| BcuI | ACTAGT | 1 cut(s) | 2807 |
| BfaI | CTAG | 4 cut(s) | 2454, 2670, 2808, 2933 |
| BfuI | GTATCC | 1 cut(s) | 19 |
| BglII | AGATCT | 1 cut(s) | 3085 |
| BisI | GCNGC | 6 cut(s) | 1721, 1742, 1770, 2259, 2271, 3007 |
| BlsI | GCNGC | 6 cut(s) | 1722, 1743, 1771, 2260, 2272, 3008 |
| Bme18I | GGWCC | 4 cut(s) | 132, 845, 1275, 2087 |
| BmeT110I | CYCGRG | 1 cut(s) | 1535 |
| BmiI | GGNNCC | 9 cut(s) | 133, 318, 846, 1122, 1276, 1740, 2348, 2459, 3853 |
| BmrI | ACTGGG | 2 cut(s) | 786, 867 |
| BmuI | ACTGGG | 2 cut(s) | 786, 867 |
| BpiI | GAAGAC | 4 cut(s) | 57, 1143, 2339, 3347 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1493, 1525 |
| BpmI | CTGGAG | 1 cut(s) | 543 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2720, 3495 |
| BpuEI | CTTGAG | 7 cut(s) | 198, 1190, 2247, 2297, 2851, 3044, 3257 |
| BpuMI | CCSGG | 2 cut(s) | 1124, 2461 |
| Bsa29I | ATCGAT | 2 cut(s) | 1761, 3783 |
| BsaHI | GRCGYC | 1 cut(s) | 3059 |
| BsaI | GGTCTC | 1 cut(s) | 2776 |
| BsaJI | CCNNGG | 7 cut(s) | 335, 851, 1117, 2072, 2350, 2589, 3074 |
| Bse1I | ACTGG | 6 cut(s) | 781, 862, 1541, 1707, 2623, 3853 |
| Bse3DI | GCAATG | 6 cut(s) | 620, 827, 1882, 2877, 3016, 3793 |
| BseBI | CCWGG | 8 cut(s) | 83, 336, 852, 1118, 1815, 2024, 2073, 3278 |
| BseCI | ATCGAT | 2 cut(s) | 1761, 3783 |
| BseDI | CCNNGG | 7 cut(s) | 335, 851, 1117, 2072, 2350, 2589, 3074 |
| BseMI | GCAATG | 6 cut(s) | 620, 827, 1882, 2877, 3016, 3793 |
| BseMII | CTCAG | 2 cut(s) | 462, 695 |
| BseNI | ACTGG | 6 cut(s) | 781, 862, 1541, 1707, 2623, 3853 |
| BseRI | GAGGAG | 2 cut(s) | 2138, 3617 |
| BseSI | GKGCMC | 5 cut(s) | 668, 931, 1124, 1536, 2461 |
| BseXI | GCAGC | 5 cut(s) | 1707, 1756, 2257, 2270, 2993 |
| BsgI | GTGCAG | 3 cut(s) | 194, 1755, 2256 |
| BshFI | GGCC | 8 cut(s) | 791, 1122, 2459, 2588, 2817, 3055, 3566, 3852 |
| BshVI | ATCGAT | 2 cut(s) | 1761, 3783 |
| BsiHKAI | GWGCWC | 4 cut(s) | 205, 557, 668, 1928 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1535 |
| BsiSI | CCGG | 2 cut(s) | 1124, 2461 |
| BslFI | GGGAC | 3 cut(s) | 868, 1062, 1288 |
| BsmAI | GTCTC | 2 cut(s) | 485, 2776 |
| BsmFI | GGGAC | 3 cut(s) | 868, 1062, 1288 |
| BsnI | GGCC | 8 cut(s) | 791, 1122, 2459, 2588, 2817, 3055, 3566, 3852 |
| Bso31I | GGTCTC | 1 cut(s) | 2776 |
| BsoBI | CYCGRG | 1 cut(s) | 1535 |
| Bsp120I | GGGCCC | 2 cut(s) | 1120, 2457 |
| Bsp1286I | GDGCHC | 8 cut(s) | 205, 557, 668, 931, 1124, 1536, 1928, 2461 |
| Bsp1407I | TGTACA | 3 cut(s) | 72, 1563, 2199 |
| Bsp143I | GATC | 9 cut(s) | 340, 594, 1087, 2019, 2390, 3085, 3253, 3776, 3784 |
| BspACI | CCGC | 4 cut(s) | 1266, 1742, 2191, 2652 |
| BspANI | GGCC | 8 cut(s) | 791, 1122, 2459, 2588, 2817, 3055, 3566, 3852 |
| BspCNI | CTCAG | 2 cut(s) | 461, 694 |
| BspDI | ATCGAT | 2 cut(s) | 1761, 3783 |
| BspHI | TCATGA | 1 cut(s) | 3183 |
| BspLI | GGNNCC | 9 cut(s) | 133, 318, 846, 1122, 1276, 1740, 2348, 2459, 3853 |
| BspPI | GGATC | 5 cut(s) | 348, 1095, 2014, 2385, 3261 |
| BspQI | GCTCTTC | 1 cut(s) | 1494 |
| BspTNI | GGTCTC | 1 cut(s) | 2776 |
| BsrDI | GCAATG | 6 cut(s) | 620, 827, 1882, 2877, 3016, 3793 |
| BsrGI | TGTACA | 3 cut(s) | 72, 1563, 2199 |
| BsrI | ACTGG | 6 cut(s) | 781, 862, 1541, 1707, 2623, 3853 |
| BssECI | CCNNGG | 7 cut(s) | 335, 851, 1117, 2072, 2350, 2589, 3074 |
| BssMI | GATC | 9 cut(s) | 340, 594, 1087, 2019, 2390, 3085, 3253, 3776, 3784 |
| BssNI | GRCGYC | 1 cut(s) | 3059 |
| BssSI | CACGAG | 1 cut(s) | 162 |
| BssT1I | CCWWGG | 2 cut(s) | 2350, 2589 |
| Bst2BI | CACGAG | 1 cut(s) | 162 |
| Bst2UI | CCWGG | 8 cut(s) | 83, 336, 852, 1118, 1815, 2024, 2073, 3278 |
| Bst4CI | ACNGT | 9 cut(s) | 31, 376, 1094, 2338, 2386, 3327, 3349, 3487, 3764 |
| Bst6I | CTCTTC | 6 cut(s) | 1494, 1565, 1570, 1608, 2113, 2355 |
| BstACI | GRCGYC | 1 cut(s) | 3059 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 209 |
| BstAUI | TGTACA | 3 cut(s) | 72, 1563, 2199 |
| BstC8I | GCNNGC | 3 cut(s) | 714, 1827, 3053 |
| BstDEI | CTNAG | 7 cut(s) | 352, 448, 681, 2231, 2720, 3089, 3495 |
| BstKTI | GATC | 9 cut(s) | 343, 597, 1090, 2022, 2393, 3088, 3256, 3779, 3787 |
| BstMAI | GTCTC | 2 cut(s) | 485, 2776 |
| BstMBI | GATC | 9 cut(s) | 340, 594, 1087, 2019, 2390, 3085, 3253, 3776, 3784 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 209, 788, 2267 |
| BstNI | CCWGG | 8 cut(s) | 83, 336, 852, 1118, 1815, 2024, 2073, 3278 |
| BstNSI | RCATGY | 6 cut(s) | 631, 716, 1829, 1960, 3524, 3549 |
| BstSLI | GKGCMC | 5 cut(s) | 668, 931, 1124, 1536, 2461 |
| BstV1I | GCAGC | 5 cut(s) | 1707, 1756, 2257, 2270, 2993 |
| BstV2I | GAAGAC | 4 cut(s) | 57, 1143, 2339, 3347 |
| BstX2I | RGATCY | 3 cut(s) | 340, 2019, 3085 |
| BstYI | RGATCY | 3 cut(s) | 340, 2019, 3085 |
| Bsu15I | ATCGAT | 2 cut(s) | 1761, 3783 |
| BsuI | GTATCC | 1 cut(s) | 19 |
| BsuRI | GGCC | 8 cut(s) | 791, 1122, 2459, 2588, 2817, 3055, 3566, 3852 |
| BsuTUI | ATCGAT | 2 cut(s) | 1761, 3783 |
| BtsI | GCAGTG | 2 cut(s) | 1698, 2464 |
| BtsIMutI | CAGTG | 6 cut(s) | 1698, 2464, 2695, 3096, 3172, 3710 |
| Cac8I | GCNNGC | 3 cut(s) | 714, 1827, 3053 |
| CaiI | CAGNNNCTG | 3 cut(s) | 494, 950, 2023 |
| CciI | TCATGA | 1 cut(s) | 3183 |
| ClaI | ATCGAT | 2 cut(s) | 1761, 3783 |
| CseI | GACGC | 1 cut(s) | 2036 |
| CsiI | ACCWGGT | 1 cut(s) | 81 |
| Csp6I | GTAC | 7 cut(s) | 73, 1377, 1564, 2200, 2299, 2681, 3309 |
| CviQI | GTAC | 7 cut(s) | 73, 1377, 1564, 2200, 2299, 2681, 3309 |
| DdeI | CTNAG | 7 cut(s) | 352, 448, 681, 2231, 2720, 3089, 3495 |
| DpnI | GATC | 9 cut(s) | 342, 596, 1089, 2021, 2392, 3087, 3255, 3778, 3786 |
| DpnII | GATC | 9 cut(s) | 340, 594, 1087, 2019, 2390, 3085, 3253, 3776, 3784 |
| DraI | TTTAAA | 4 cut(s) | 229, 535, 2320, 3082 |
| EaeI | YGGCCR | 3 cut(s) | 2586, 3053, 3564 |
| Eam1104I | CTCTTC | 6 cut(s) | 1494, 1565, 1570, 1608, 2113, 2355 |
| EarI | CTCTTC | 6 cut(s) | 1494, 1565, 1570, 1608, 2113, 2355 |
| Ecl136II | GAGCTC | 1 cut(s) | 1926 |
| Eco130I | CCWWGG | 2 cut(s) | 2350, 2589 |
| Eco24I | GRGCYC | 3 cut(s) | 1124, 1928, 2461 |
| Eco31I | GGTCTC | 1 cut(s) | 2776 |
| Eco32I | GATATC | 1 cut(s) | 3625 |
| Eco47I | GGWCC | 4 cut(s) | 132, 845, 1275, 2087 |
| Eco53kI | GAGCTC | 1 cut(s) | 1926 |
| Eco57I | CTGAAG | 6 cut(s) | 662, 972, 1005, 1509, 1589, 2723 |
| Eco88I | CYCGRG | 1 cut(s) | 1535 |
| EcoICRI | GAGCTC | 1 cut(s) | 1926 |
| EcoO109I | RGGNCCY | 2 cut(s) | 132, 2457 |
| EcoRI | GAATTC | 2 cut(s) | 745, 3154 |
| EcoRII | CCWGG | 8 cut(s) | 81, 334, 850, 1116, 1813, 2022, 2071, 3276 |
| EcoRV | GATATC | 1 cut(s) | 3625 |
| EcoT14I | CCWWGG | 2 cut(s) | 2350, 2589 |
| EcoT22I | ATGCAT | 2 cut(s) | 714, 1974 |
| EcoT38I | GRGCYC | 3 cut(s) | 1124, 1928, 2461 |
| ErhI | CCWWGG | 2 cut(s) | 2350, 2589 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2214, 2246 |
| FaqI | GGGAC | 3 cut(s) | 868, 1062, 1288 |
| FbaI | TGATCA | 1 cut(s) | 594 |
| FblI | GTMKAC | 3 cut(s) | 824, 1545, 2381 |
| Fnu4HI | GCNGC | 6 cut(s) | 1721, 1742, 1770, 2259, 2271, 3007 |
| FriOI | GRGCYC | 3 cut(s) | 1124, 1928, 2461 |
| Fsp4HI | GCNGC | 6 cut(s) | 1721, 1742, 1770, 2259, 2271, 3007 |
| FspBI | CTAG | 4 cut(s) | 2454, 2670, 2808, 2933 |
| GluI | GCNGC | 6 cut(s) | 1721, 1742, 1770, 2259, 2271, 3007 |
| GsuI | CTGGAG | 1 cut(s) | 543 |
| HaeIII | GGCC | 8 cut(s) | 791, 1122, 2459, 2588, 2817, 3055, 3566, 3852 |
| HapII | CCGG | 2 cut(s) | 1124, 2461 |
| HgaI | GACGC | 1 cut(s) | 2036 |
| Hin1I | GRCGYC | 1 cut(s) | 3059 |
| HincII | GTYRAC | 1 cut(s) | 2440 |
| HindII | GTYRAC | 1 cut(s) | 2440 |
| HindIII | AAGCTT | 4 cut(s) | 1906, 2228, 2306, 2717 |
| HpaI | GTTAAC | 1 cut(s) | 2440 |
| HpaII | CCGG | 2 cut(s) | 1124, 2461 |
| HphI | GGTGA | 9 cut(s) | 532, 991, 1082, 1138, 1250, 1256, 1853, 2341, 3041 |
| Hpy166II | GTNNAC | 6 cut(s) | 666, 825, 848, 1546, 2382, 2440 |
| Hpy8I | GTNNAC | 6 cut(s) | 666, 825, 848, 1546, 2382, 2440 |
| Hpy99I | CGWCG | 1 cut(s) | 3061 |
| HpyAV | CCTTC | 7 cut(s) | 1381, 1640, 1958, 1999, 2122, 2320, 2671 |
| HpyCH4III | ACNGT | 9 cut(s) | 31, 376, 1094, 2338, 2386, 3327, 3349, 3487, 3764 |
| HpyCH4IV | ACGT | 3 cut(s) | 307, 2442, 3059 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 209, 788, 2267 |
| HpyF3I | CTNAG | 7 cut(s) | 352, 448, 681, 2231, 2720, 3089, 3495 |
| HpySE526I | ACGT | 3 cut(s) | 307, 2442, 3059 |
| Hsp92I | GRCGYC | 1 cut(s) | 3059 |
| Ksp22I | TGATCA | 1 cut(s) | 594 |
| KspAI | GTTAAC | 1 cut(s) | 2440 |
| Kzo9I | GATC | 9 cut(s) | 340, 594, 1087, 2019, 2390, 3085, 3253, 3776, 3784 |
| LguI | GCTCTTC | 1 cut(s) | 1494 |
| LmnI | GCTCC | 2 cut(s) | 1738, 2035 |
| Lsp1109I | GCAGC | 5 cut(s) | 1707, 1756, 2257, 2270, 2993 |
| MabI | ACCWGGT | 1 cut(s) | 81 |
| MaeI | CTAG | 4 cut(s) | 2454, 2670, 2808, 2933 |
| MaeII | ACGT | 3 cut(s) | 307, 2442, 3059 |
| MalI | GATC | 9 cut(s) | 342, 596, 1089, 2021, 2392, 3087, 3255, 3778, 3786 |
| MboI | GATC | 9 cut(s) | 340, 594, 1087, 2019, 2390, 3085, 3253, 3776, 3784 |
| MfeI | CAATTG | 5 cut(s) | 1463, 1775, 2871, 3001, 3767 |
| MflI | RGATCY | 3 cut(s) | 340, 2019, 3085 |
| MhlI | GDGCHC | 8 cut(s) | 205, 557, 668, 931, 1124, 1536, 1928, 2461 |
| MlsI | TGGCCA | 1 cut(s) | 2588 |
| MluNI | TGGCCA | 1 cut(s) | 2588 |
| MlyI | GAGTC | 7 cut(s) | 776, 910, 1001, 1044, 1799, 2554, 3499 |
| MmeI | TCCRAC | 6 cut(s) | 36, 1115, 2827, 2828, 3231, 3301 |
| Mox20I | TGGCCA | 1 cut(s) | 2588 |
| Mph1103I | ATGCAT | 2 cut(s) | 714, 1974 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2708, 2799, 3559 |
| MscI | TGGCCA | 1 cut(s) | 2588 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2903 |
| Msp20I | TGGCCA | 1 cut(s) | 2588 |
| MspA1I | CMGCKG | 2 cut(s) | 1744, 2652 |
| MspI | CCGG | 2 cut(s) | 1124, 2461 |
| MunI | CAATTG | 5 cut(s) | 1463, 1775, 2871, 3001, 3767 |
| MvaI | CCWGG | 8 cut(s) | 83, 336, 852, 1118, 1815, 2024, 2073, 3278 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 209, 788, 2267 |
| NciI | CCSGG | 2 cut(s) | 1124, 2461 |
| NdeII | GATC | 9 cut(s) | 340, 594, 1087, 2019, 2390, 3085, 3253, 3776, 3784 |
| NlaIV | GGNNCC | 9 cut(s) | 133, 318, 846, 1122, 1276, 1740, 2348, 2459, 3853 |
| NmeAIII | GCCGAG | 1 cut(s) | 3462 |
| NmuCI | GTSAC | 7 cut(s) | 42, 421, 538, 768, 979, 1126, 1934 |
| NsiI | ATGCAT | 2 cut(s) | 714, 1974 |
| NspI | RCATGY | 6 cut(s) | 631, 716, 1829, 1960, 3524, 3549 |
| PaeI | GCATGC | 2 cut(s) | 716, 1829 |
| PagI | TCATGA | 1 cut(s) | 3183 |
| PciI | ACATGT | 2 cut(s) | 627, 3520 |
| PciSI | GCTCTTC | 1 cut(s) | 1494 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2708, 2799, 3559 |
| PflFI | GACNNNGTC | 1 cut(s) | 2145 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2023, 3283 |
| PfoI | TCCNGGA | 1 cut(s) | 2022 |
| PkrI | GCNGC | 6 cut(s) | 1722, 1743, 1771, 2260, 2272, 3008 |
| PleI | GAGTC | 7 cut(s) | 775, 910, 1000, 1044, 1798, 2553, 3498 |
| PpsI | GAGTC | 7 cut(s) | 775, 910, 1000, 1044, 1798, 2553, 3498 |
| PpuMI | RGGWCCY | 1 cut(s) | 132 |
| PscI | ACATGT | 2 cut(s) | 627, 3520 |
| PshBI | ATTAAT | 1 cut(s) | 2103 |
| Psp124BI | GAGCTC | 1 cut(s) | 1928 |
| Psp1406I | AACGTT | 1 cut(s) | 2442 |
| Psp5II | RGGWCCY | 1 cut(s) | 132 |
| Psp6I | CCWGG | 8 cut(s) | 81, 334, 850, 1116, 1813, 2022, 2071, 3276 |
| PspGI | CCWGG | 8 cut(s) | 81, 334, 850, 1116, 1813, 2022, 2071, 3276 |
| PspN4I | GGNNCC | 9 cut(s) | 133, 318, 846, 1122, 1276, 1740, 2348, 2459, 3853 |
| PspOMI | GGGCCC | 2 cut(s) | 1120, 2457 |
| PspPPI | RGGWCCY | 1 cut(s) | 132 |
| PstNI | CAGNNNCTG | 3 cut(s) | 494, 950, 2023 |
| PsuI | RGATCY | 3 cut(s) | 340, 2019, 3085 |
| PsyI | GACNNNGTC | 1 cut(s) | 2145 |
| RsaI | GTAC | 7 cut(s) | 74, 1378, 1565, 2201, 2300, 2682, 3310 |
| RsaNI | GTAC | 7 cut(s) | 73, 1377, 1564, 2200, 2299, 2681, 3309 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2903 |
| SacI | GAGCTC | 1 cut(s) | 1928 |
| SapI | GCTCTTC | 1 cut(s) | 1494 |
| SatI | GCNGC | 6 cut(s) | 1721, 1742, 1770, 2259, 2271, 3007 |
| Sau3AI | GATC | 9 cut(s) | 340, 594, 1087, 2019, 2390, 3085, 3253, 3776, 3784 |
| SchI | GAGTC | 7 cut(s) | 776, 910, 1001, 1044, 1799, 2554, 3499 |
| SduI | GDGCHC | 8 cut(s) | 205, 557, 668, 931, 1124, 1536, 1928, 2461 |
| SexAI | ACCWGGT | 1 cut(s) | 81 |
| SinI | GGWCC | 4 cut(s) | 132, 845, 1275, 2087 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2903 |
| SmlI | CTYRAG | 7 cut(s) | 213, 1169, 2262, 2276, 2830, 3023, 3236 |
| SmoI | CTYRAG | 7 cut(s) | 213, 1169, 2262, 2276, 2830, 3023, 3236 |
| SpeI | ACTAGT | 1 cut(s) | 2807 |
| SphI | GCATGC | 2 cut(s) | 716, 1829 |
| SsiI | CCGC | 4 cut(s) | 1266, 1742, 2191, 2652 |
| SspI | AATATT | 1 cut(s) | 1692 |
| SspMI | CTAG | 4 cut(s) | 2454, 2670, 2808, 2933 |
| SstI | GAGCTC | 1 cut(s) | 1928 |
| StyI | CCWWGG | 2 cut(s) | 2350, 2589 |
| TaaI | ACNGT | 9 cut(s) | 31, 376, 1094, 2338, 2386, 3327, 3349, 3487, 3764 |
| TaiI | ACGT | 3 cut(s) | 310, 2445, 3062 |
| TaqI | TCGA | 6 cut(s) | 179, 1761, 1928, 2423, 2726, 3783 |
| TaqII | GACCGA | 3 cut(s) | 409, 1292, 2075 |
| TatI | WGTACW | 4 cut(s) | 72, 1563, 2199, 2298 |
| TauI | GCSGC | 1 cut(s) | 1744 |
| TscAI | CASTG | 6 cut(s) | 1705, 2471, 2695, 3103, 3172, 3717 |
| TseFI | GTSAC | 7 cut(s) | 42, 421, 538, 768, 979, 1126, 1934 |
| TseI | GCWGC | 5 cut(s) | 1720, 1769, 2258, 2270, 3006 |
| Tsp45I | GTSAC | 7 cut(s) | 42, 421, 538, 768, 979, 1126, 1934 |
| TspGWI | ACGGA | 5 cut(s) | 449, 683, 1658, 1965, 2734 |
| TspRI | CASTG | 6 cut(s) | 1705, 2471, 2695, 3103, 3172, 3717 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2145 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2023, 3283 |
| VneI | GTGCAC | 1 cut(s) | 664 |
| VpaK11BI | GGWCC | 4 cut(s) | 132, 845, 1275, 2087 |
| VspI | ATTAAT | 1 cut(s) | 2103 |
| XbaI | TCTAGA | 2 cut(s) | 2669, 2932 |
| XceI | RCATGY | 6 cut(s) | 631, 716, 1829, 1960, 3524, 3549 |
| XmiI | GTMKAC | 3 cut(s) | 824, 1545, 2381 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2708, 2799, 3559 |
| XspI | CTAG | 4 cut(s) | 2454, 2670, 2808, 2933 |
| ZraI | GACGTC | 1 cut(s) | 3060 |
| Zsp2I | ATGCAT | 2 cut(s) | 714, 1974 |