TPR and ankyrin repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2074 |
| Acc16I | TGCGCA | 1 cut(s) | 3052 |
| Acc36I | ACCTGC | 2 cut(s) | 2074, 3257 |
| AccB1I | GGYRCC | 1 cut(s) | 852 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 4714, 5445 |
| AccBSI | CCGCTC | 2 cut(s) | 2828, 5405 |
| AccI | GTMKAC | 3 cut(s) | 3681, 5100, 5318 |
| AccII | CGCG | 1 cut(s) | 4752 |
| AciI | CCGC | 7 cut(s) | 1023, 2828, 2849, 3130, 3206, 4599, 5403 |
| AclI | AACGTT | 1 cut(s) | 3423 |
| AclWI | GGATC | 3 cut(s) | 561, 4328, 4891 |
| AcoI | YGGCCR | 5 cut(s) | 231, 1231, 2571, 5109, 5436 |
| AcuI | CTGAAG | 8 cut(s) | 51, 428, 945, 1844, 2369, 4037, 4124, 5031 |
| AcyI | GRCGYC | 1 cut(s) | 3564 |
| AdeI | CACNNNGTG | 1 cut(s) | 2580 |
| AfaI | GTAC | 7 cut(s) | 271, 1180, 1882, 3755, 4661, 5078, 5279 |
| AflIII | ACRYGT | 3 cut(s) | 393, 991, 1689 |
| AgeI | ACCGGT | 1 cut(s) | 5395 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 960, 4297 |
| AjnI | CCWGG | 7 cut(s) | 244, 2490, 3748, 4558, 4662, 4676, 5339 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 849, 881, 1092, 1124, 1790, 1822 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2653, 2685 |
| Alw21I | GWGCWC | 5 cut(s) | 22, 2342, 4368, 4935, 5428 |
| Alw26I | GTCTC | 7 cut(s) | 2107, 2802, 2912, 3324, 3907, 4201, 5303 |
| AlwI | GGATC | 3 cut(s) | 561, 4328, 4891 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 185, 803, 923, 1226, 2738 |
| Ama87I | CYCGRG | 1 cut(s) | 4337 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 506, 538, 3380, 3412 |
| AseI | ATTAAT | 1 cut(s) | 2958 |
| AsiGI | ACCGGT | 1 cut(s) | 5395 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1857, 3107, 3360, 4415, 4722 |
| AspLEI | GCGC | 4 cut(s) | 942, 3053, 3443, 4587 |
| AspS9I | GGNCC | 9 cut(s) | 1320, 1465, 2176, 2986, 3348, 3838, 4445, 4705, 5270 |
| AsuC2I | CCSGG | 4 cut(s) | 147, 544, 1439, 1469 |
| AvaI | CYCGRG | 1 cut(s) | 4337 |
| AvaII | GGWCC | 4 cut(s) | 2986, 3838, 4445, 5270 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1913, 1946, 3745, 3778 |
| BalI | TGGCCA | 3 cut(s) | 1233, 2573, 5438 |
| BanI | GGYRCC | 1 cut(s) | 852 |
| BanII | GRGCYC | 3 cut(s) | 4054, 4368, 4935 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1566, 1598 |
| BauI | CACGAG | 2 cut(s) | 2532, 4882 |
| BbsI | GAAGAC | 2 cut(s) | 2418, 4725 |
| Bbv12I | GWGCWC | 5 cut(s) | 22, 2342, 4368, 4935, 5428 |
| BceAI | ACGGC | 1 cut(s) | 5124 |
| BciT130I | CCWGG | 7 cut(s) | 246, 2492, 3750, 4560, 4664, 4678, 5341 |
| BciVI | GTATCC | 1 cut(s) | 2134 |
| BclI | TGATCA | 2 cut(s) | 4329, 5308 |
| BcnI | CCSGG | 4 cut(s) | 147, 544, 1439, 1469 |
| BcoDI | GTCTC | 7 cut(s) | 2107, 2802, 2912, 3324, 3907, 4201, 5303 |
| BfaI | CTAG | 6 cut(s) | 503, 894, 2474, 2784, 3000, 3651 |
| BfmI | CTRYAG | 8 cut(s) | 487, 877, 915, 1410, 2868, 3729, 4133, 5347 |
| BfoI | RGCGCY | 1 cut(s) | 4588 |
| BfuAI | ACCTGC | 2 cut(s) | 2074, 3257 |
| BfuI | GTATCC | 1 cut(s) | 2134 |
| BglII | AGATCT | 2 cut(s) | 1654, 3619 |
| Bme18I | GGWCC | 4 cut(s) | 2986, 3838, 4445, 5270 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 960, 4297 |
| BmeT110I | CYCGRG | 1 cut(s) | 4337 |
| BmgT120I | GGNCC | 9 cut(s) | 1320, 1465, 2176, 2986, 3348, 3838, 4445, 4705, 5270 |
| BmiI | GGNNCC | 8 cut(s) | 129, 510, 854, 1322, 3155, 3840, 4467, 4706 |
| BmrI | ACTGGG | 3 cut(s) | 813, 2617, 4167 |
| BmuI | ACTGGG | 3 cut(s) | 813, 2617, 4167 |
| BpiI | GAAGAC | 2 cut(s) | 2418, 4725 |
| BpmI | CTGGAG | 5 cut(s) | 1746, 1980, 3732, 4552, 5003 |
| Bpu10I | CCTNAGC | 3 cut(s) | 966, 1402, 2994 |
| BpuEI | CTTGAG | 4 cut(s) | 1580, 1869, 2201, 5435 |
| BpuMI | CCSGG | 4 cut(s) | 147, 544, 1439, 1469 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3915 |
| BsaHI | GRCGYC | 1 cut(s) | 3564 |
| BsaI | GGTCTC | 2 cut(s) | 3907, 5303 |
| BsaWI | WCCGGW | 1 cut(s) | 5395 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3609, 3639 |
| Bse118I | RCCGGY | 1 cut(s) | 5395 |
| Bse3DI | GCAATG | 2 cut(s) | 2502, 4332 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3915 |
| BseBI | CCWGG | 7 cut(s) | 246, 2492, 3750, 4560, 4664, 4678, 5341 |
| BseJI | GATNNNNATC | 1 cut(s) | 3915 |
| BseMI | GCAATG | 2 cut(s) | 2502, 4332 |
| BseMII | CTCAG | 9 cut(s) | 587, 1175, 1349, 1447, 2913, 3435, 3950, 4353, 4920 |
| BseRI | GAGGAG | 3 cut(s) | 1088, 2534, 4981 |
| BseYI | CCCAGC | 2 cut(s) | 3219, 4909 |
| BsgI | GTGCAG | 3 cut(s) | 2097, 4066, 5373 |
| Bsh1236I | CGCG | 1 cut(s) | 4752 |
| BshNI | GGYRCC | 1 cut(s) | 852 |
| BshTI | ACCGGT | 1 cut(s) | 5395 |
| BsiHKAI | GWGCWC | 5 cut(s) | 22, 2342, 4368, 4935, 5428 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4337 |
| BsiSI | CCGG | 6 cut(s) | 147, 544, 1438, 1468, 2631, 5396 |
| BslFI | GGGAC | 4 cut(s) | 227, 804, 3146, 3824 |
| BsmAI | GTCTC | 7 cut(s) | 2107, 2802, 2912, 3324, 3907, 4201, 5303 |
| BsmBI | CGTCTC | 1 cut(s) | 2107 |
| BsmFI | GGGAC | 4 cut(s) | 227, 804, 3146, 3824 |
| BsmI | GAATGC | 2 cut(s) | 878, 3631 |
| Bso31I | GGTCTC | 2 cut(s) | 3907, 5303 |
| BsoBI | CYCGRG | 1 cut(s) | 4337 |
| Bsp1286I | GDGCHC | 6 cut(s) | 22, 2342, 4054, 4368, 4935, 5428 |
| Bsp19I | CCATGG | 4 cut(s) | 3351, 4406, 4689, 4940 |
| Bsp68I | TCGCGA | 1 cut(s) | 4752 |
| BspACI | CCGC | 7 cut(s) | 1023, 2828, 2849, 3130, 3206, 4599, 5403 |
| BspCNI | CTCAG | 9 cut(s) | 586, 1176, 1348, 1446, 2912, 3436, 3949, 4354, 4921 |
| BspFNI | CGCG | 1 cut(s) | 4752 |
| BspHI | TCATGA | 4 cut(s) | 1111, 2034, 2551, 3087 |
| BspLI | GGNNCC | 8 cut(s) | 129, 510, 854, 1322, 3155, 3840, 4467, 4706 |
| BspMAI | CTGCAG | 3 cut(s) | 919, 2872, 5351 |
| BspMI | ACCTGC | 2 cut(s) | 2074, 3257 |
| BspPI | GGATC | 3 cut(s) | 561, 4328, 4891 |
| BspT107I | GGYRCC | 1 cut(s) | 852 |
| BspTNI | GGTCTC | 2 cut(s) | 3907, 5303 |
| BsrBI | CCGCTC | 2 cut(s) | 2828, 5405 |
| BsrDI | GCAATG | 2 cut(s) | 2502, 4332 |
| BsrFI | RCCGGY | 1 cut(s) | 5395 |
| BssAI | RCCGGY | 1 cut(s) | 5395 |
| BssNI | GRCGYC | 1 cut(s) | 3564 |
| BssSI | CACGAG | 2 cut(s) | 2532, 4882 |
| BssT1I | CCWWGG | 7 cut(s) | 2883, 3256, 3351, 4109, 4406, 4689, 4940 |
| Bst2BI | CACGAG | 2 cut(s) | 2532, 4882 |
| Bst2UI | CCWGG | 7 cut(s) | 246, 2492, 3750, 4560, 4664, 4678, 5341 |
| Bst6I | CTCTTC | 3 cut(s) | 741, 1701, 2670 |
| BstACI | GRCGYC | 1 cut(s) | 3564 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 26, 2738 |
| BstDSI | CCRYGG | 4 cut(s) | 3351, 4406, 4689, 4940 |
| BstEII | GGTNACC | 2 cut(s) | 522, 5398 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3260 |
| BstFNI | CGCG | 1 cut(s) | 4752 |
| BstH2I | RGCGCY | 1 cut(s) | 4588 |
| BstHHI | GCGC | 4 cut(s) | 942, 3053, 3443, 4587 |
| BstMAI | GTCTC | 7 cut(s) | 2107, 2802, 2912, 3324, 3907, 4201, 5303 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 26, 1415, 2467, 2738, 3215, 5387 |
| BstNI | CCWGG | 7 cut(s) | 246, 2492, 3750, 4560, 4664, 4678, 5341 |
| BstNSI | RCATGY | 7 cut(s) | 397, 995, 1020, 1422, 1693, 2147, 2978 |
| BstPI | GGTNACC | 2 cut(s) | 522, 5398 |
| BstSFI | CTRYAG | 8 cut(s) | 487, 877, 915, 1410, 2868, 3729, 4133, 5347 |
| BstUI | CGCG | 1 cut(s) | 4752 |
| BstV2I | GAAGAC | 2 cut(s) | 2418, 4725 |
| BstX2I | RGATCY | 3 cut(s) | 553, 1654, 3619 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 519, 2523, 5027 |
| BstYI | RGATCY | 3 cut(s) | 553, 1654, 3619 |
| BsuI | GTATCC | 1 cut(s) | 2134 |
| BtgI | CCRYGG | 4 cut(s) | 3351, 4406, 4689, 4940 |
| BtgZI | GCGATG | 1 cut(s) | 3199 |
| BtsI | GCAGTG | 1 cut(s) | 3287 |
| BtuMI | TCGCGA | 1 cut(s) | 4752 |
| BveI | ACCTGC | 2 cut(s) | 2074, 3257 |
| CaiI | CAGNNNCTG | 5 cut(s) | 185, 803, 923, 1226, 2738 |
| CciI | TCATGA | 4 cut(s) | 1111, 2034, 2551, 3087 |
| CfoI | GCGC | 4 cut(s) | 942, 3053, 3443, 4587 |
| Cfr10I | RCCGGY | 1 cut(s) | 5395 |
| Cfr13I | GGNCC | 9 cut(s) | 1320, 1465, 2176, 2986, 3348, 3838, 4445, 4705, 5270 |
| CseI | GACGC | 1 cut(s) | 3572 |
| CsiI | ACCWGGT | 2 cut(s) | 4558, 4676 |
| Csp6I | GTAC | 7 cut(s) | 270, 1179, 1881, 3754, 4660, 5077, 5278 |
| CspAI | ACCGGT | 1 cut(s) | 5395 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2484, 2519, 4818, 4853 |
| CviQI | GTAC | 7 cut(s) | 270, 1179, 1881, 3754, 4660, 5077, 5278 |
| DraI | TTTAAA | 4 cut(s) | 481, 1684, 1962, 4992 |
| DraIII | CACNNNGTG | 1 cut(s) | 2580 |
| DriI | GACNNNNNGTC | 2 cut(s) | 960, 4297 |
| EaeI | YGGCCR | 5 cut(s) | 231, 1231, 2571, 5109, 5436 |
| Eam1104I | CTCTTC | 3 cut(s) | 741, 1701, 2670 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 960, 4297 |
| EarI | CTCTTC | 3 cut(s) | 741, 1701, 2670 |
| EciI | GGCGGA | 1 cut(s) | 1038 |
| Ecl136II | GAGCTC | 2 cut(s) | 4366, 4933 |
| Eco130I | CCWWGG | 7 cut(s) | 2883, 3256, 3351, 4109, 4406, 4689, 4940 |
| Eco147I | AGGCCT | 3 cut(s) | 1842, 3284, 4415 |
| Eco24I | GRGCYC | 3 cut(s) | 4054, 4368, 4935 |
| Eco31I | GGTCTC | 2 cut(s) | 3907, 5303 |
| Eco32I | GATATC | 1 cut(s) | 1096 |
| Eco47I | GGWCC | 4 cut(s) | 2986, 3838, 4445, 5270 |
| Eco53kI | GAGCTC | 2 cut(s) | 4366, 4933 |
| Eco57I | CTGAAG | 8 cut(s) | 51, 428, 945, 1844, 2369, 4037, 4124, 5031 |
| Eco88I | CYCGRG | 1 cut(s) | 4337 |
| Eco91I | GGTNACC | 2 cut(s) | 522, 5398 |
| EcoICRI | GAGCTC | 2 cut(s) | 4366, 4933 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3260 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2176 |
| EcoO65I | GGTNACC | 2 cut(s) | 522, 5398 |
| EcoRI | GAATTC | 3 cut(s) | 622, 4021, 4198 |
| EcoRII | CCWGG | 7 cut(s) | 244, 2490, 3748, 4558, 4662, 4676, 5339 |
| EcoRV | GATATC | 1 cut(s) | 1096 |
| EcoT14I | CCWWGG | 7 cut(s) | 2883, 3256, 3351, 4109, 4406, 4689, 4940 |
| EcoT22I | ATGCAT | 1 cut(s) | 1420 |
| EcoT38I | GRGCYC | 3 cut(s) | 4054, 4368, 4935 |
| ErhI | CCWWGG | 7 cut(s) | 2883, 3256, 3351, 4109, 4406, 4689, 4940 |
| Esp3I | CGTCTC | 1 cut(s) | 2107 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4710, 4742 |
| FaqI | GGGAC | 4 cut(s) | 227, 804, 3146, 3824 |
| FauI | CCCGC | 2 cut(s) | 2842, 3123 |
| FauNDI | CATATG | 1 cut(s) | 61 |
| FbaI | TGATCA | 2 cut(s) | 4329, 5308 |
| FblI | GTMKAC | 3 cut(s) | 3681, 5100, 5318 |
| FriOI | GRGCYC | 3 cut(s) | 4054, 4368, 4935 |
| FspBI | CTAG | 6 cut(s) | 503, 894, 2474, 2784, 3000, 3651 |
| FspI | TGCGCA | 1 cut(s) | 3052 |
| GlaI | GCGC | 4 cut(s) | 941, 3052, 3442, 4586 |
| GsaI | CCCAGC | 2 cut(s) | 3223, 4913 |
| GsuI | CTGGAG | 5 cut(s) | 1746, 1980, 3732, 4552, 5003 |
| HaeII | RGCGCY | 1 cut(s) | 4588 |
| HapII | CCGG | 6 cut(s) | 147, 544, 1438, 1468, 2631, 5396 |
| HgaI | GACGC | 1 cut(s) | 3572 |
| HhaI | GCGC | 4 cut(s) | 942, 3053, 3443, 4587 |
| Hin1I | GRCGYC | 1 cut(s) | 3564 |
| Hin6I | GCGC | 4 cut(s) | 940, 3051, 3441, 4585 |
| HinP1I | GCGC | 4 cut(s) | 940, 3051, 3441, 4585 |
| HincII | GTYRAC | 3 cut(s) | 1866, 5101, 5176 |
| HindII | GTYRAC | 3 cut(s) | 1866, 5101, 5176 |
| HindIII | AAGCTT | 5 cut(s) | 1349, 2625, 3105, 3989, 4388 |
| HpaII | CCGG | 6 cut(s) | 147, 544, 1438, 1468, 2631, 5396 |
| Hpy166II | GTNNAC | 8 cut(s) | 685, 1181, 1430, 1866, 3682, 5101, 5176, 5319 |
| Hpy8I | GTNNAC | 8 cut(s) | 685, 1181, 1430, 1866, 3682, 5101, 5176, 5319 |
| Hpy99I | CGWCG | 1 cut(s) | 1593 |
| HpyCH4IV | ACGT | 2 cut(s) | 3423, 4684 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 26, 1415, 2467, 2738, 3215, 5387 |
| HpySE526I | ACGT | 2 cut(s) | 3423, 4684 |
| Hsp92I | GRCGYC | 1 cut(s) | 3564 |
| HspAI | GCGC | 4 cut(s) | 940, 3051, 3441, 4585 |
| Ksp22I | TGATCA | 2 cut(s) | 4329, 5308 |
| MabI | ACCWGGT | 2 cut(s) | 4558, 4676 |
| MaeI | CTAG | 6 cut(s) | 503, 894, 2474, 2784, 3000, 3651 |
| MaeII | ACGT | 2 cut(s) | 3423, 4684 |
| MbiI | CCGCTC | 2 cut(s) | 2828, 5405 |
| MflI | RGATCY | 3 cut(s) | 553, 1654, 3619 |
| MhlI | GDGCHC | 6 cut(s) | 22, 2342, 4054, 4368, 4935, 5428 |
| MlsI | TGGCCA | 3 cut(s) | 1233, 2573, 5438 |
| MluNI | TGGCCA | 3 cut(s) | 1233, 2573, 5438 |
| MlyI | GAGTC | 9 cut(s) | 970, 1374, 1675, 1820, 1861, 2276, 2804, 3455, 4022 |
| MmeI | TCCRAC | 3 cut(s) | 3429, 4569, 4824 |
| Mox20I | TGGCCA | 3 cut(s) | 1233, 2573, 5438 |
| Mph1103I | ATGCAT | 1 cut(s) | 1420 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1857, 3107, 3360, 4415, 4722 |
| MscI | TGGCCA | 3 cut(s) | 1233, 2573, 5438 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2562 |
| Msp20I | TGGCCA | 3 cut(s) | 1233, 2573, 5438 |
| MspA1I | CMGCKG | 1 cut(s) | 5357 |
| MspI | CCGG | 6 cut(s) | 147, 544, 1438, 1468, 2631, 5396 |
| MssI | GTTTAAAC | 1 cut(s) | 1684 |
| Mva1269I | GAATGC | 2 cut(s) | 878, 3631 |
| MvaI | CCWGG | 7 cut(s) | 246, 2492, 3750, 4560, 4664, 4678, 5341 |
| MvnI | CGCG | 1 cut(s) | 4752 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 26, 1415, 2467, 2738, 3215, 5387 |
| NciI | CCSGG | 4 cut(s) | 147, 544, 1439, 1469 |
| NcoI | CCATGG | 4 cut(s) | 3351, 4406, 4689, 4940 |
| NdeI | CATATG | 1 cut(s) | 61 |
| NlaIV | GGNNCC | 8 cut(s) | 129, 510, 854, 1322, 3155, 3840, 4467, 4706 |
| NmuCI | GTSAC | 8 cut(s) | 522, 590, 952, 1216, 2597, 4693, 5359, 5398 |
| NruI | TCGCGA | 1 cut(s) | 4752 |
| NsbI | TGCGCA | 1 cut(s) | 3052 |
| NsiI | ATGCAT | 1 cut(s) | 1420 |
| NspI | RCATGY | 7 cut(s) | 397, 995, 1020, 1422, 1693, 2147, 2978 |
| PaeI | GCATGC | 2 cut(s) | 2147, 2978 |
| PagI | TCATGA | 4 cut(s) | 1111, 2034, 2551, 3087 |
| PaqCI | CACCTGC | 1 cut(s) | 2074 |
| PceI | AGGCCT | 3 cut(s) | 1842, 3284, 4415 |
| PciI | ACATGT | 3 cut(s) | 393, 991, 1689 |
| PctI | GAATGC | 2 cut(s) | 878, 3631 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1857, 3107, 3360, 4415, 4722 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 4714, 5445 |
| PinAI | ACCGGT | 1 cut(s) | 5395 |
| PleI | GAGTC | 9 cut(s) | 969, 1373, 1674, 1819, 1861, 2276, 2804, 3454, 4022 |
| PmeI | GTTTAAAC | 1 cut(s) | 1684 |
| PpsI | GAGTC | 9 cut(s) | 969, 1373, 1674, 1819, 1861, 2276, 2804, 3454, 4022 |
| PscI | ACATGT | 3 cut(s) | 393, 991, 1689 |
| PshBI | ATTAAT | 1 cut(s) | 2958 |
| Psp124BI | GAGCTC | 2 cut(s) | 4368, 4935 |
| Psp1406I | AACGTT | 1 cut(s) | 3423 |
| Psp6I | CCWGG | 7 cut(s) | 244, 2490, 3748, 4558, 4662, 4676, 5339 |
| PspEI | GGTNACC | 2 cut(s) | 522, 5398 |
| PspFI | CCCAGC | 2 cut(s) | 3219, 4909 |
| PspGI | CCWGG | 7 cut(s) | 244, 2490, 3748, 4558, 4662, 4676, 5339 |
| PspN4I | GGNNCC | 8 cut(s) | 129, 510, 854, 1322, 3155, 3840, 4467, 4706 |
| PspPI | GGNCC | 9 cut(s) | 1320, 1465, 2176, 2986, 3348, 3838, 4445, 4705, 5270 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2259, 2291 |
| PstI | CTGCAG | 3 cut(s) | 919, 2872, 5351 |
| PstNI | CAGNNNCTG | 5 cut(s) | 185, 803, 923, 1226, 2738 |
| PsuI | RGATCY | 3 cut(s) | 553, 1654, 3619 |
| PvuII | CAGCTG | 1 cut(s) | 5357 |
| RruI | TCGCGA | 1 cut(s) | 4752 |
| RsaI | GTAC | 7 cut(s) | 271, 1180, 1882, 3755, 4661, 5078, 5279 |
| RsaNI | GTAC | 7 cut(s) | 270, 1179, 1881, 3754, 4660, 5077, 5278 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2562 |
| SacI | GAGCTC | 2 cut(s) | 4368, 4935 |
| SalI | GTCGAC | 1 cut(s) | 5099 |
| Sau96I | GGNCC | 9 cut(s) | 1320, 1465, 2176, 2986, 3348, 3838, 4445, 4705, 5270 |
| SchI | GAGTC | 9 cut(s) | 970, 1374, 1675, 1820, 1861, 2276, 2804, 3455, 4022 |
| SduI | GDGCHC | 6 cut(s) | 22, 2342, 4054, 4368, 4935, 5428 |
| SexAI | ACCWGGT | 2 cut(s) | 4558, 4676 |
| SfcI | CTRYAG | 8 cut(s) | 487, 877, 915, 1410, 2868, 3729, 4133, 5347 |
| SinI | GGWCC | 4 cut(s) | 2986, 3838, 4445, 5270 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2562 |
| SmlI | CTYRAG | 4 cut(s) | 1595, 1884, 2180, 5414 |
| SmoI | CTYRAG | 4 cut(s) | 1595, 1884, 2180, 5414 |
| SphI | GCATGC | 2 cut(s) | 2147, 2978 |
| SseBI | AGGCCT | 3 cut(s) | 1842, 3284, 4415 |
| SsiI | CCGC | 7 cut(s) | 1023, 2828, 2849, 3130, 3206, 4599, 5403 |
| SspI | AATATT | 3 cut(s) | 2712, 3123, 5288 |
| SspMI | CTAG | 6 cut(s) | 503, 894, 2474, 2784, 3000, 3651 |
| SstI | GAGCTC | 2 cut(s) | 4368, 4935 |
| StuI | AGGCCT | 3 cut(s) | 1842, 3284, 4415 |
| StyI | CCWWGG | 7 cut(s) | 2883, 3256, 3351, 4109, 4406, 4689, 4940 |
| TaiI | ACGT | 2 cut(s) | 3426, 4687 |
| TatI | WGTACW | 2 cut(s) | 5076, 5277 |
| TauI | GCSGC | 2 cut(s) | 2831, 3209 |
| TseFI | GTSAC | 8 cut(s) | 522, 590, 952, 1216, 2597, 4693, 5359, 5398 |
| Tsp45I | GTSAC | 8 cut(s) | 522, 590, 952, 1216, 2597, 4693, 5359, 5398 |
| TspGWI | ACGGA | 3 cut(s) | 353, 1868, 3955 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 4714, 5445 |
| VpaK11BI | GGWCC | 4 cut(s) | 2986, 3838, 4445, 5270 |
| VspI | ATTAAT | 1 cut(s) | 2958 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3260 |
| XbaI | TCTAGA | 2 cut(s) | 502, 3650 |
| XceI | RCATGY | 7 cut(s) | 397, 995, 1020, 1422, 1693, 2147, 2978 |
| XmiI | GTMKAC | 3 cut(s) | 3681, 5100, 5318 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1857, 3107, 3360, 4415, 4722 |
| XspI | CTAG | 6 cut(s) | 503, 894, 2474, 2784, 3000, 3651 |
| Zsp2I | ATGCAT | 1 cut(s) | 1420 |