Prupe.1G087400_v2.0.a1

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000223
Physical Location & Seq
Forward (+)
6502660 .. 6510249
7590 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G087400.1

Sequence Viewer

Length: 5472 bp
ATGGAAACTCTGGACAGAGCACCATTCGGTGAAGTAACTGCTATAGAAGAATCGAAGCCATATGGAAAAAAGCTATATGATGTCGAGGTTGATTACTGGAGAAACATGTCCAGTGATTCCTGCAAGGAACCGTATAAAACTCTGCCTGGACATGTTTTTTTACTGTCAGATGCTAAACCCGAAAGTATTTCAGATATACAGGAGTCAAAGAAATCATGGGCATTTCTGATAGTCACTGAAGTGTCCAATCTTTCTTTTAAAGTTAAAGCATCGAAAGAGCTTCAAGTCTCCAATGGCATTCAGGCATCTCTCTTTATGGCTTTCCTAATTAATATAACTCCTAACGTGAGAATATGGAAAGCAATCGACAATAACAAAAGTGCTAGATGGAAGGTCCTTTTCAGTGACAACTTTTTGAAATCATTCAAAAAACTGAAGTCATTCCGACTGAAGATGTCATTGCTGTTTCTTCTGCTTAAGCTTTCTAGTGGATGGAGACCCAATAAAAGAAATGTAGAAAAGATTTGTGAAAGCTCTTTGATGATCTGGAAGAAATTTAAGGTTGAAGGTATATATATTGTTTGCACAACTGAAATTGAAAAAGATTGGAGATACATGCAAGTGTTGAAGATCTGGGATATATTGCCTGATCTTGATTTGGAAATTCCGGCCAGCTGGCCCCCCTCTCTGGATGTTGCCCGGTTTGAAGATTTAAGCATCGCCGAAAAAACCCCAAGTTATTTACTTGGTGATTCTTCAGCAGATAGAAGTTATGTTGAGAAATCAAATGTTAGTGAGAGTTTGTTACTGATGAAATTCTACTCCTTATCATCTGGGGTGGCAAACTTCTTGCTGTCTAACAGTGAAGGTAGAGAACTGGATCTCCCCTTTCAACTTACAGATCAAGAAATGGAGATCGTCCGTTATAATAGAAGTACATTTATACTGGGACGCTCAGGCACCGGGAAGACAACAGTTCTTACAATGAAATTATGTCAGAAAGAACAGCAGCAACGTATTGCAGAGGAAGGATTCTATGGTGTTGAGAATGCACTCTCGCATGTTTTTCCGAATAATAACGAGGTTGAGCAGAGTCCTACTGGTGCTAAAATGTGTGTCTTGCGCCAGCTTTTTGTGACAGTGAGTGCGAAACTCTGTTTTGCCGTCAAGCAACATGTTTTACACTTGAAAAGTTTTTCTTCTGGGGGAAACCATTCAGGTGAATGCAATTCGACTGATAGCATTGATTTTGAGGATGAAGAAGCCCAGTTCAACAATATCCCAGATTCTTTTCTTGATATTCCGCCCAACTGTTATCCTCTTTTCATAACATTCCATAAGTTCTTGATGATGCTTGATGGAACCTTAGGTAACTCATTCTTTGAAAGATTCCTTGACACCTCAGAACCTCAGCCAAGTTCAAGATCAGTTGCGCTGCAGACGGTTCTAAGACAAAAGGAGGTCAATCTTGCGAGGTTCAGCACCTCGTATTGGCCTCATTTTAATATACGGCTAACAAAGAAGCTTGATCCTTCTAAAGTATTTACAGAGATTATCTCTCATATAAAAGGCGGCCTGGGAGTCACAAAAGCAGGTGATGGAAAACTCAGTCGAGGAGATTATGTCCAACGTTCAGAGGGCCGGGTGTCAAATCTAAGCAAGGAGAAGAGGGAGATGATATATGATATATTTCTGGTTTATGAAAAAAAGAAAAAGAAAAATGTTGAATTTGATGTCACTGATTTTGTTAATGATATTCACCGTCGACTCAGACGTGAAAAGTACAAGGGTCATGAAATGGATTTTGTATATATTGATGAGGTTCAGGATCTAACAGTCAATCAGATTAGACTCTTCAAACACGTTTGCAGTAATGTTGAAGAGGGTTTTGTTTTTTCTGGTGATACTGCACAGGCAATTGCAAGGGGTATTGATTTTAGATTCCAAGATATACGACACATGTTCTACAAGGAATTCGTACTGGAATCAAAAAGAGATAAACACGAACAAATAGAAGACAAAGGACAACTCTCAAAAATATTTCATTTGTCTCAAAACTTCCGTACGCATGATGGTATACTGAAGTTATCACAGAGCATAATTGATCTACTTTACCATTTTTTCCCCCAATCTATTGATAAATTGAAACCTGAAACCAGTCCAATATATGGGGAAGCTCCAGTTTTGCTTGAACCTGGAAAAAATGAGAATATAATCAAGAAGATTTTTGGAAGTTTTCGTGGAAATATAGTTGGCTTTGGAGCGGAGCAGGTTATTTTGGTGCGTGATGAGCGTGCTCGGAACGAAATTTTCAATCAAGTTGCAAAGCGAGCTCTTGTTCTTACTATATTGGAGAGCAAGGGCCTTGAATTTCAGGATGTACTGCTTTACAACTTTTTTGGATCATCACCATTGCAAAATCAGTGGAGGGTGATATATGATTACATGAAGGAGCATGATTTGCTTGACTCCACTTTACCTGAGCACTTTCCAAGTTTTGATGAAGACAAACACAACATCTTATGTTCCGAACTTAAGCAACTATATGTTGCTGTCTCTCGTACTAAACAAAGGTTGTGGGTTTATGAGAATATGGAAGAGCTATCCAATCCCATGTTTAACTATTGGAAAAGGAAATGTCTTGTGCAAGTTAGGCACTTCGATGATTCACTTGCAAGGGAAATGCAAGCTCAGAGCAATCCAGAGGAGTGGAGGTCACGTGGCATGAAGCTCTATCAAGAGGATAACTATGAAATGGCCACAATGTGTTTTCAAAGAGCTGGTGATACTTATTGGGAAAGAAGGTCGAAAGCTGCTGGCCTGAAAGTTATGGCTGACCTTAAGCGCACTTCAAATCCTGGAAAGGCTAATGCTCTCCTCAAGGAAGCTGGAGAAATTTTTGAATCTTTAGGGAAGGCAGATTCTGCTGCCCAATGCTTTTTTGATTCTGGGGAGTACAAAAGAGCAGCTAATATTTATTTGGAAAAGTGCGGCGAACGTGGACTTGAAAGAGCTGGCAAATGCTTCTCTCTAGCAGGATTCTATGAGCATGCAGCCGATGCATATGCCAGAGGCAAATTTTTCTCCGAGTGTCTAACTATGTGTTTGAAGGGAAAACTATTTGACATAGGTTTGGAATATTTTAAATTTTGGAAGCAACAAGCAAGAGAAGAGTATGATCGGGCTCTAAGAAGAAAAGGTACAGATGAAATTGAACTGGATTTTCTTGAGAACTGTGCATTTCACTATTATCATGAGGTTGAAGATAACAGATCCAAGATGAAACTTGTTAAAGGTGAAATGTTATCTGGACGAAAATTTTTGAATACTCATCTTTCTTCAAGCTCGTCAAAGTATGTGTGGGAAGAAAATATTATTTGTGATCCGAAAAAGTATTCTGAAGTCAAGAAATCTAAAAAGCAGGTTTCTATTGATTCACTGGTGTACTTTTGGAATTTTTGGATGGATAAGATTGTTTATTTGATAGAATATTTTGGATGTCTAGAAACCCTAGATGTTAATAAGAGAAGAAGTTATGGAGACTTCTTTTTAAATTACTTGGCGGTGTGGAGGGAGTTTCATGATGATTTGAATCCAATATATCTTTTACTCATTTCTGATGCTGATTGGGTTAGTGGTGTGGATAAGCGTTATTTTATAAGTAATGGTGAATTGGTCACTGTTGATTTTTGCCAAATTGTTTCATCTGCTAAGATTTATTGGAGTTCAGAACTACTCTCTTTCAGTACTAAGATTTTGAATAAGCTTCAAGTGCTTTACGAGTTCATGACCGAAAAATCTGATTCAATCTTCTGCCAAAGCTGGTGTCTTACCCAGATTTATGTGGTTGCAAACTGTCTTTTGGAGTCAAAATACCTGAAGCTAACATATACAGATTTGAATACACTACAGAATTTTGTTAATCTGTCAACTGAAAACATTGTTGCTTGCATATTTCCTTTAGATTGGAGGAAATCTTTGAGAGAGAATATGATTTCTCTGAGACAAAACGATGCTTGTAAAAGTTTACTCAAGAAAGTTGTAGTTGATTATATGAACTCAAAGAAAAAGCTGTCTTATGGGCAAGTAGGAAGGATTGCAATGATTATTCTTGGCTCTAGCAATTTTAACAATGAACTGTATGCTGTGAATAATTTGCATTGTAGTGCACCATGGAAGGTGTTCATTAAGAACATATGTCAAGAACCGAAAGAGGAGTCTCTGCCGTGGTGGTTCCACGAAGCTTTGGATGACACTTATCTAGCAAACTGGGAGGGGGAACGTGACTACCTGTCACCTGATTGCTTGTTGTATCTTTTTGAACGCCTTCTGATGTGGGTGTCCTGCTTACAAGGGTATGTTATCACTACAAAATCTTGTTTTACTAAATGGCTGATACACCAGCAGGAAGATACAAAATTTACTTCCAGTATAAGGCCTGATGTGCCAATATGTTCTGAAGTCATCCTTCAGTTTTTGATTGATGTGGTTCAGGATTTGCTTTATGATAAGGACACCGTGGTTGAATGGATTCAAAAGTCTATCAAGGATTGGGAGAAGTATTATTCACTGCTGATCCTGAGATTGGTTGTCATCTTGTGCTTGCTTTATTTTAATTTTGGGATGTGTTTTAGCATACTCTTAGAACTAATTTGGAGGGACTACATCACTGAGCAACTACCAAAGGAGTTTTGTGAGGCCCTCAGGAGACTTATATTTGTACAAAATTCTCCTAGTATAAATGTGAATCTGATTGAGGAAGCCTTTAAGAAAATTGGTAATCCTTTGGTAGTTGCAAGTTTCGGGATCGATTGTTCTAGGTTCATTTGTTCAGATGCCATTTTTTTTGACATGAAGGCGAACCTGTGCATTGACGAAATGTTGAGAACATTGTTCTCAAAACAGCACATTCATGTTCAATCTTCACGAGGTCAATCTGAAGCCATGGTGGTAGAAGCTAAAAGTTACTGCTCTGCTGCGCCTTCTGCTTATGATTCAAATGAGGCTAACTGCTCTAAGCTTGTTCCAAATGCCCCCGGCTTGGTAACAGATAAAGTCCAAAACACTGGAAATAGCAAGCAAAGTAGCCTTCCATTGGATTTTGATTTCTTTTGGGAAATAATTGAAGGTTTACAATTGTTGGATAAGGAAGGAGATCAGAGGAGTTTCTCTTCGGAGGCCTCAACAATCAAGTTGGATCTGGAGAGAGCTATTGGCACCTGGACTGCTGCATGGTATACATACTATTCAAACTGTGATGACAGAGGAGCATTATCTGCAGAAGTACTTCACATGCTTGATGAAACGGTGCAACTCTATGCTGTATTAGATGGGAGTGAGCAGGAACTTCGCAACAAAATTTCAACAGTTGCAGAACTTTCAAGGCGGTTGCAGTCAAGGAGGCAAACGTTGGAGCCAATCTTGACTCGCCTAGTATTGGAGCACAATTCAAGGCTTGCTGTTGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

1824

Amino Acids

211.15

Weight (kDa)

6.12

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 927, 3659
AarI CACCTGC 1 cut(s) 1583
Acc36I ACCTGC 3 cut(s) 1583, 2260, 3412
AccB1I GGYRCC 2 cut(s) 959, 5216
AccB7I CCANNNNNTGG 1 cut(s) 2168
AccBSI CCGCTC 1 cut(s) 2264
AccI GTMKAC 3 cut(s) 1765, 2077, 5237
AciI CCGC 6 cut(s) 1304, 1572, 2264, 2991, 3563, 5386
AclI AACGTT 2 cut(s) 1630, 5408
AclWI GGATC 9 cut(s) 888, 1523, 1836, 2410, 3267, 3377, 4570, 4814, 5205
AcoI YGGCCR 2 cut(s) 669, 2757
AcvI CACGTG 1 cut(s) 2720
AdeI CACNNNGTG 1 cut(s) 2766
AfiI CCNNNNNNNGG 8 cut(s) 688, 1491, 2168, 4434, 4585, 5041, 5095, 5437
AflII CTTAAG 3 cut(s) 476, 2534, 2840
AflIII ACRYGT 5 cut(s) 105, 151, 1174, 1861, 1959
AhdI GACNNNNNGTC 1 cut(s) 4291
AjiI CACGTC 1 cut(s) 1775
AjnI CCWGG 5 cut(s) 145, 1575, 2194, 2857, 5219
AleI CACNNNNGTG 1 cut(s) 239
AloI GAACNNNNNNTCC 4 cut(s) 867, 899, 4798, 4830
Alw21I GWGCWC 6 cut(s) 22, 2299, 2335, 2487, 4171, 5445
Alw26I GTCTC 8 cut(s) 292, 490, 2055, 2560, 3534, 3997, 4224, 4702
Alw44I GTGCAC 1 cut(s) 4167
AlwI GGATC 9 cut(s) 888, 1523, 1836, 2410, 3267, 3377, 4570, 4814, 5205
AlwNI CAGNNNCTG 1 cut(s) 2924
ApaLI GTGCAC 1 cut(s) 4167
ApeKI GCWGC 8 cut(s) 1009, 1435, 2813, 2927, 2966, 3053, 4976, 5228
ArsI GACNNNNNNTTYG 4 cut(s) 3811, 3843, 4202, 4234
AseI ATTAAT 1 cut(s) 330
Asp700I GAANNNNTTC 7 cut(s) 422, 440, 1213, 4181, 4326, 4530, 5286
AspLEI GCGC 4 cut(s) 1125, 1435, 2847, 4981
AspS9I GGNCC 5 cut(s) 394, 678, 1639, 2362, 4699
AsuC2I CCSGG 4 cut(s) 700, 964, 1643, 5037
AvaII GGWCC 1 cut(s) 394
AxyI CCTNAGG 2 cut(s) 1366, 4703
BaeGI GKGCMC 1 cut(s) 4171
BalI TGGCCA 1 cut(s) 2759
BanI GGYRCC 2 cut(s) 959, 5216
BanII GRGCYC 2 cut(s) 2335, 3187
BarI GAAGNNNNNNTAC 2 cut(s) 3184, 3216
BauI CACGAG 1 cut(s) 4926
BbrPI CACGTG 1 cut(s) 2720
BbsI GAAGAC 3 cut(s) 974, 2022, 2511
Bbv12I GWGCWC 6 cut(s) 22, 2299, 2335, 2487, 4171, 5445
BbvCI CCTCAGC 1 cut(s) 1410
BbvI GCAGC 8 cut(s) 1021, 1422, 2800, 2914, 2978, 3065, 4963, 5215
BccI CCATC 7 cut(s) 381, 486, 1352, 1592, 2066, 3457, 5324
BceAI ACGGC 3 cut(s) 1148, 1526, 4210
BcgI CGANNNNNNTGC 4 cut(s) 3047, 3081, 5330, 5364
BciT130I CCWGG 5 cut(s) 147, 1577, 2196, 2859, 5221
BcnI CCSGG 4 cut(s) 700, 964, 1643, 5037
BcoDI GTCTC 8 cut(s) 292, 490, 2055, 2560, 3534, 3997, 4224, 4702
BfmI CTRYAG 4 cut(s) 42, 1436, 3908, 5277
BfrI CTTAAG 3 cut(s) 476, 2534, 2840
BfuAI ACCTGC 3 cut(s) 1583, 2260, 3412
BglII AGATCT 1 cut(s) 630
BmcAI AGTACT 2 cut(s) 3748, 5286
Bme1390I CCNGG 9 cut(s) 147, 700, 964, 1577, 1643, 2196, 2859, 5037, 5221
Bme18I GGWCC 1 cut(s) 394
BmeRI GACNNNNNGTC 1 cut(s) 4291
BmgBI CACGTC 1 cut(s) 1775
BmgT120I GGNCC 5 cut(s) 394, 678, 1639, 2362, 4699
BmiI GGNNCC 7 cut(s) 129, 680, 961, 1363, 4235, 5218, 5415
BmrFI CCNGG 9 cut(s) 147, 700, 964, 1577, 1643, 2196, 2859, 5037, 5221
BmrI ACTGGG 3 cut(s) 956, 1261, 4279
BmsI GCATC 9 cut(s) 160, 278, 314, 726, 1341, 3049, 3610, 4003, 4825
BmuI ACTGGG 3 cut(s) 956, 1261, 4279
BpiI GAAGAC 3 cut(s) 974, 2022, 2511
BplI GAGNNNNNCTC 2 cut(s) 1541, 1573
BpmI CTGGAG 4 cut(s) 118, 2163, 2910, 5222
Bpu10I CCTNAGC 3 cut(s) 955, 1410, 2481
BpuEI CTTGAG 3 cut(s) 2864, 3248, 4016
BpuMI CCSGG 4 cut(s) 700, 964, 1643, 5037
Bsa29I ATCGAT 1 cut(s) 4809
BsaAI YACGTR 1 cut(s) 2720
BsaBI GATNNNNATC 1 cut(s) 3591
BsaI GGTCTC 1 cut(s) 490
BsaJI CCNNGG 6 cut(s) 1576, 4172, 4226, 4518, 4944, 5035
BsaXI ACNNNNNCTCC 8 cut(s) 867, 897, 1608, 1638, 2699, 2704, 2729, 2734
Bsc4I CCNNNNNNNGG 8 cut(s) 688, 1491, 2168, 4434, 4585, 5041, 5095, 5437
Bse21I CCTNAGG 2 cut(s) 1366, 4703
Bse3DI GCAATG 3 cut(s) 458, 2411, 4107
Bse8I GATNNNNATC 1 cut(s) 3591
BseBI CCWGG 5 cut(s) 147, 1577, 2196, 2859, 5221
BseCI ATCGAT 1 cut(s) 4809
BseDI CCNNGG 6 cut(s) 1576, 4172, 4226, 4518, 4944, 5035
BseGI GGATG 9 cut(s) 497, 697, 1261, 2383, 3468, 3503, 4255, 4464, 4629
BseJI GATNNNNATC 1 cut(s) 3591
BseLI CCNNNNNNNGG 8 cut(s) 688, 1491, 2168, 4434, 4585, 5041, 5095, 5437
BseMI GCAATG 3 cut(s) 458, 2411, 4107
BseRI GAGGAG 6 cut(s) 1629, 2720, 2867, 4229, 5176, 5280
BseSI GKGCMC 1 cut(s) 4171
BseXI GCAGC 8 cut(s) 1021, 1422, 2800, 2914, 2978, 3065, 4963, 5215
BsgI GTGCAG 1 cut(s) 1893
BshNI GGYRCC 2 cut(s) 959, 5216
BshVI ATCGAT 1 cut(s) 4809
BsiHKAI GWGCWC 6 cut(s) 22, 2299, 2335, 2487, 4171, 5445
BsiSI CCGG 5 cut(s) 668, 700, 963, 1642, 5037
BsiWI CGTACG 1 cut(s) 2063
BslFI GGGAC 2 cut(s) 963, 4673
BslI CCNNNNNNNGG 8 cut(s) 688, 1491, 2168, 4434, 4585, 5041, 5095, 5437
BsmAI GTCTC 8 cut(s) 292, 490, 2055, 2560, 3534, 3997, 4224, 4702
BsmFI GGGAC 2 cut(s) 963, 4673
BsmI GAATGC 3 cut(s) 297, 1054, 1229
Bso31I GGTCTC 1 cut(s) 490
Bsp1286I GDGCHC 7 cut(s) 22, 2299, 2335, 2487, 3187, 4171, 5445
Bsp1407I TGTACA 1 cut(s) 4720
Bsp19I CCATGG 2 cut(s) 4172, 4944
BspACI CCGC 6 cut(s) 1304, 1572, 2264, 2991, 3563, 5386
BspDI ATCGAT 1 cut(s) 4809
BspHI TCATGA 4 cut(s) 1792, 3253, 3580, 3786
BspLI GGNNCC 7 cut(s) 129, 680, 961, 1363, 4235, 5218, 5415
BspMAI CTGCAG 2 cut(s) 1440, 5281
BspMI ACCTGC 3 cut(s) 1583, 2260, 3412
BspPI GGATC 9 cut(s) 888, 1523, 1836, 2410, 3267, 3377, 4570, 4814, 5205
BspQI GCTCTTC 1 cut(s) 2592
BspT107I GGYRCC 2 cut(s) 959, 5216
BspTI CTTAAG 3 cut(s) 476, 2534, 2840
BspTNI GGTCTC 1 cut(s) 490
BsrBI CCGCTC 1 cut(s) 2264
BsrDI GCAATG 3 cut(s) 458, 2411, 4107
BsrGI TGTACA 1 cut(s) 4720
BssECI CCNNGG 6 cut(s) 1576, 4172, 4226, 4518, 4944, 5035
BssNAI GTATAC 2 cut(s) 2078, 5238
BssSI CACGAG 1 cut(s) 4926
BssT1I CCWWGG 2 cut(s) 4172, 4944
Bst1107I GTATAC 2 cut(s) 2078, 5238
Bst2BI CACGAG 1 cut(s) 4926
Bst2UI CCWGG 5 cut(s) 147, 1577, 2196, 2859, 5221
Bst6I CTCTTC 6 cut(s) 1661, 1859, 1875, 2592, 3165, 5176
BstAFI CTTAAG 3 cut(s) 476, 2534, 2840
BstAPI GCANNNNNTGC 4 cut(s) 2461, 2924, 3059, 5276
BstAUI TGTACA 1 cut(s) 4720
BstBAI YACGTR 1 cut(s) 2720
BstDSI CCRYGG 4 cut(s) 4172, 4226, 4518, 4944
BstF5I GGATG 9 cut(s) 497, 697, 1261, 2383, 3468, 3503, 4255, 4464, 4629
BstHHI GCGC 4 cut(s) 1125, 1435, 2847, 4981
BstMAI GTCTC 8 cut(s) 292, 490, 2055, 2560, 3534, 3997, 4224, 4702
BstNI CCWGG 5 cut(s) 147, 1577, 2196, 2859, 5221
BstNSI RCATGY 8 cut(s) 109, 155, 619, 1064, 1178, 1963, 3053, 5296
BstSCI CCNGG 9 cut(s) 145, 698, 962, 1575, 1641, 2194, 2857, 5035, 5219
BstSFI CTRYAG 4 cut(s) 42, 1436, 3908, 5277
BstSLI GKGCMC 1 cut(s) 4171
BstV1I GCAGC 8 cut(s) 1021, 1422, 2800, 2914, 2978, 3065, 4963, 5215
BstV2I GAAGAC 3 cut(s) 974, 2022, 2511
BstX2I RGATCY 5 cut(s) 630, 880, 1828, 3272, 5197
BstXI CCANNNNNNTGG 2 cut(s) 2709, 5066
BstYI RGATCY 5 cut(s) 630, 880, 1828, 3272, 5197
BstZ17I GTATAC 2 cut(s) 2078, 5238
Bsu15I ATCGAT 1 cut(s) 4809
Bsu36I CCTNAGG 2 cut(s) 1366, 4703
BsuTUI ATCGAT 1 cut(s) 4809
BtgI CCRYGG 4 cut(s) 4172, 4226, 4518, 4944
BtgZI GCGATG 1 cut(s) 703
BtrI CACGTC 1 cut(s) 1775
BtsCI GGATG 9 cut(s) 497, 697, 1261, 2383, 3468, 3503, 4255, 4464, 4629
BtsI GCAGTG 1 cut(s) 4568
BveI ACCTGC 3 cut(s) 1583, 2260, 3412
CaiI CAGNNNCTG 1 cut(s) 2924
CciI TCATGA 4 cut(s) 1792, 3253, 3580, 3786
CfoI GCGC 4 cut(s) 1125, 1435, 2847, 4981
Cfr13I GGNCC 5 cut(s) 394, 678, 1639, 2362, 4699
ClaI ATCGAT 1 cut(s) 4809
CseI GACGC 1 cut(s) 960
CspCI CAANNNNNGTGG 4 cut(s) 2405, 2440, 2558, 2593
DraI TTTAAA 3 cut(s) 259, 3145, 3552
DraIII CACNNNGTG 1 cut(s) 2766
DriI GACNNNNNGTC 1 cut(s) 4291
EaeI YGGCCR 2 cut(s) 669, 2757
Eam1104I CTCTTC 6 cut(s) 1661, 1859, 1875, 2592, 3165, 5176
Eam1105I GACNNNNNGTC 1 cut(s) 4291
EarI CTCTTC 6 cut(s) 1661, 1859, 1875, 2592, 3165, 5176
EciI GGCGGA 1 cut(s) 1293
Ecl136II GAGCTC 1 cut(s) 2333
Eco130I CCWWGG 2 cut(s) 4172, 4944
Eco147I AGGCCT 2 cut(s) 4438, 5180
Eco24I GRGCYC 2 cut(s) 2335, 3187
Eco31I GGTCTC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 394
Eco53kI GAGCTC 1 cut(s) 2333
Eco72I CACGTG 1 cut(s) 2720
Eco81I CCTNAGG 2 cut(s) 1366, 4703
EcoICRI GAGCTC 1 cut(s) 2333
EcoO109I RGGNCCY 3 cut(s) 394, 2362, 4699
EcoRI GAATTC 1 cut(s) 1973
EcoRII CCWGG 5 cut(s) 145, 1575, 2194, 2857, 5219
EcoT14I CCWWGG 2 cut(s) 4172, 4944
EcoT22I ATGCAT 1 cut(s) 3064
EcoT38I GRGCYC 2 cut(s) 2335, 3187
ErhI CCWWGG 2 cut(s) 4172, 4944
FalI AAGNNNNNCTT 4 cut(s) 1183, 1215, 4452, 4484
FaqI GGGAC 2 cut(s) 963, 4673
FauNDI CATATG 3 cut(s) 61, 3064, 4196
FblI GTMKAC 3 cut(s) 1765, 2077, 5237
FokI GGATG 9 cut(s) 504, 704, 1268, 2390, 3475, 3510, 4262, 4451, 4636
FriOI GRGCYC 2 cut(s) 2335, 3187
GlaI GCGC 4 cut(s) 1124, 1434, 2846, 4980
GsuI CTGGAG 4 cut(s) 118, 2163, 2910, 5222
HapII CCGG 5 cut(s) 668, 700, 963, 1642, 5037
HgaI GACGC 1 cut(s) 960
HhaI GCGC 4 cut(s) 1125, 1435, 2847, 4981
Hin6I GCGC 4 cut(s) 1123, 1433, 2845, 4979
HinP1I GCGC 4 cut(s) 1123, 1433, 2845, 4979
HincII GTYRAC 2 cut(s) 1766, 3930
HindII GTYRAC 2 cut(s) 1766, 3930
HindIII AAGCTT 5 cut(s) 479, 1523, 3764, 4242, 5018
HpaII CCGG 5 cut(s) 668, 700, 963, 1642, 5037
Hpy166II GTNNAC 9 cut(s) 1766, 2078, 3002, 3445, 3930, 4028, 4169, 5132, 5238
Hpy8I GTNNAC 9 cut(s) 1766, 2078, 3002, 3445, 3930, 4028, 4169, 5132, 5238
Hpy99I CGWCG 1 cut(s) 1767
HpyCH4IV ACGT 9 cut(s) 345, 1015, 1630, 1774, 1863, 2719, 2998, 4282, 5408
HpySE526I ACGT 9 cut(s) 345, 1015, 1630, 1774, 1863, 2719, 2998, 4282, 5408
HspAI GCGC 4 cut(s) 1123, 1433, 2845, 4979
LguI GCTCTTC 1 cut(s) 2592
LmnI GCTCC 7 cut(s) 2182, 2261, 2266, 2452, 5267, 5413, 5440
Lsp1109I GCAGC 8 cut(s) 1021, 1422, 2800, 2914, 2978, 3065, 4963, 5215
LweI GCATC 9 cut(s) 160, 278, 314, 726, 1341, 3049, 3610, 4003, 4825
MaeII ACGT 9 cut(s) 345, 1015, 1630, 1774, 1863, 2719, 2998, 4282, 5408
MbiI CCGCTC 1 cut(s) 2264
MfeI CAATTG 2 cut(s) 1917, 5135
MflI RGATCY 5 cut(s) 630, 880, 1828, 3272, 5197
MhlI GDGCHC 7 cut(s) 22, 2299, 2335, 2487, 3187, 4171, 5445
MlsI TGGCCA 1 cut(s) 2759
MluNI TGGCCA 1 cut(s) 2759
MlyI GAGTC 9 cut(s) 212, 1102, 1590, 1761, 1845, 2462, 3875, 4226, 5419
MmeI TCCRAC 5 cut(s) 469, 1651, 5121, 5175, 5391
Mox20I TGGCCA 1 cut(s) 2759
Mph1103I ATGCAT 1 cut(s) 3064
MroXI GAANNNNTTC 7 cut(s) 422, 440, 1213, 4181, 4326, 4530, 5286
MscI TGGCCA 1 cut(s) 2759
MslI CAYNNNNRTG 6 cut(s) 239, 620, 1218, 2661, 4164, 4911
Msp20I TGGCCA 1 cut(s) 2759
MspA1I CMGCKG 1 cut(s) 675
MspCI CTTAAG 3 cut(s) 476, 2534, 2840
MspI CCGG 5 cut(s) 668, 700, 963, 1642, 5037
MspR9I CCNGG 9 cut(s) 147, 700, 964, 1577, 1643, 2196, 2859, 5037, 5221
MunI CAATTG 2 cut(s) 1917, 5135
Mva1269I GAATGC 3 cut(s) 297, 1054, 1229
MvaI CCWGG 5 cut(s) 147, 1577, 2196, 2859, 5221
NciI CCSGG 4 cut(s) 700, 964, 1643, 5037
NcoI CCATGG 2 cut(s) 4172, 4944
NdeI CATATG 3 cut(s) 61, 3064, 4196
NlaIV GGNNCC 7 cut(s) 129, 680, 961, 1363, 4235, 5218, 5415
NmuCI GTSAC 9 cut(s) 232, 404, 1135, 1582, 1735, 2715, 3676, 4283, 4293
NsiI ATGCAT 1 cut(s) 3064
NspI RCATGY 8 cut(s) 109, 155, 619, 1064, 1178, 1963, 3053, 5296
OliI CACNNNNGTG 1 cut(s) 239
PaeI GCATGC 1 cut(s) 3053
PagI TCATGA 4 cut(s) 1792, 3253, 3580, 3786
PaqCI CACCTGC 1 cut(s) 1583
PceI AGGCCT 2 cut(s) 4438, 5180
PciI ACATGT 4 cut(s) 105, 151, 1174, 1959
PciSI GCTCTTC 1 cut(s) 2592
PcsI WCGNNNNNNNCGW 1 cut(s) 1771
PctI GAATGC 3 cut(s) 297, 1054, 1229
PdmI GAANNNNTTC 7 cut(s) 422, 440, 1213, 4181, 4326, 4530, 5286
Pfl23II CGTACG 1 cut(s) 2063
PflMI CCANNNNNTGG 1 cut(s) 2168
PfoI TCCNGGA 1 cut(s) 2857
PleI GAGTC 9 cut(s) 211, 1101, 1589, 1761, 1845, 2462, 3874, 4225, 5419
PmaCI CACGTG 1 cut(s) 2720
PmlI CACGTG 1 cut(s) 2720
PpsI GAGTC 9 cut(s) 211, 1101, 1589, 1761, 1845, 2462, 3874, 4225, 5419
Ppu21I YACGTR 1 cut(s) 2720
PpuMI RGGWCCY 1 cut(s) 394
PscI ACATGT 4 cut(s) 105, 151, 1174, 1959
PshBI ATTAAT 1 cut(s) 330
PsiI TTATAA 2 cut(s) 927, 3659
Psp124BI GAGCTC 1 cut(s) 2335
Psp1406I AACGTT 2 cut(s) 1630, 5408
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 5 cut(s) 145, 1575, 2194, 2857, 5219
PspCI CACGTG 1 cut(s) 2720
PspGI CCWGG 5 cut(s) 145, 1575, 2194, 2857, 5219
PspLI CGTACG 1 cut(s) 2063
PspN4I GGNNCC 7 cut(s) 129, 680, 961, 1363, 4235, 5218, 5415
PspPI GGNCC 5 cut(s) 394, 678, 1639, 2362, 4699
PspPPI RGGWCCY 1 cut(s) 394
PstI CTGCAG 2 cut(s) 1440, 5281
PstNI CAGNNNCTG 1 cut(s) 2924
PsuI RGATCY 5 cut(s) 630, 880, 1828, 3272, 5197
PvuII CAGCTG 1 cut(s) 675
RseI CAYNNNNRTG 6 cut(s) 239, 620, 1218, 2661, 4164, 4911
SacI GAGCTC 1 cut(s) 2335
SalI GTCGAC 1 cut(s) 1764
SapI GCTCTTC 1 cut(s) 2592
Sau96I GGNCC 5 cut(s) 394, 678, 1639, 2362, 4699
ScaI AGTACT 2 cut(s) 3748, 5286
SchI GAGTC 9 cut(s) 212, 1102, 1590, 1761, 1845, 2462, 3875, 4226, 5419
ScrFI CCNGG 9 cut(s) 147, 700, 964, 1577, 1643, 2196, 2859, 5037, 5221
SduI GDGCHC 7 cut(s) 22, 2299, 2335, 2487, 3187, 4171, 5445
SfaNI GCATC 9 cut(s) 160, 278, 314, 726, 1341, 3049, 3610, 4003, 4825
SfcI CTRYAG 4 cut(s) 42, 1436, 3908, 5277
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 6 cut(s) 239, 620, 1218, 2661, 4164, 4911
SmlI CTYRAG 6 cut(s) 476, 2534, 2840, 2879, 3227, 4031
SmoI CTYRAG 6 cut(s) 476, 2534, 2840, 2879, 3227, 4031
SphI GCATGC 1 cut(s) 3053
SseBI AGGCCT 2 cut(s) 4438, 5180
SsiI CCGC 6 cut(s) 1304, 1572, 2264, 2991, 3563, 5386
SspI AATATT 5 cut(s) 2040, 2974, 3140, 3373, 3491
SstI GAGCTC 1 cut(s) 2335
StuI AGGCCT 2 cut(s) 4438, 5180
StyD4I CCNGG 9 cut(s) 145, 698, 962, 1575, 1641, 2194, 2857, 5035, 5219
StyI CCWWGG 2 cut(s) 4172, 4944
TaiI ACGT 9 cut(s) 348, 1018, 1633, 1777, 1866, 2722, 3001, 4285, 5411
TaqII GACCGA 1 cut(s) 3806
TatI WGTACW 8 cut(s) 935, 1782, 2380, 2955, 3444, 3746, 4720, 5284
TauI GCSGC 2 cut(s) 1575, 2994
TseFI GTSAC 9 cut(s) 232, 404, 1135, 1582, 1735, 2715, 3676, 4283, 4293
TseI GCWGC 8 cut(s) 1009, 1435, 2813, 2927, 2966, 3053, 4976, 5228
Tsp45I GTSAC 9 cut(s) 232, 404, 1135, 1582, 1735, 2715, 3676, 4283, 4293
TspGWI ACGGA 2 cut(s) 911, 2051
Van91I CCANNNNNTGG 1 cut(s) 2168
Vha464I CTTAAG 3 cut(s) 476, 2534, 2840
VneI GTGCAC 1 cut(s) 4167
VpaK11BI GGWCC 1 cut(s) 394
VspI ATTAAT 1 cut(s) 330
XbaI TCTAGA 1 cut(s) 3502
XceI RCATGY 8 cut(s) 109, 155, 619, 1064, 1178, 1963, 3053, 5296
XmiI GTMKAC 3 cut(s) 1765, 2077, 5237
XmnI GAANNNNTTC 7 cut(s) 422, 440, 1213, 4181, 4326, 4530, 5286
ZrmI AGTACT 2 cut(s) 3748, 5286
Zsp2I ATGCAT 1 cut(s) 3064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.