Rh4BG426000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000223
Physical Location & Seq
Reverse (-)
56982089 .. 56982280
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG426000.1

Sequence Viewer

Length: 192 bp
ATGAACTCCCAATCGGCATCCGTCATATCGATCGAATCGAAGACCGGAGTGGTATCGAAACGCGAAACGCGACGAGGCGAAGGGTCTGCGATTAGCGGTGATGTGGCTCTCGTCCATGAGAAGGAGACGATCGCTGCTACCGTCGTCGATGGTGGTGTTGGGCGAAACCCTACAAATGAGTTTGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.52

Weight (kDa)

5.22

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 63, 70
AciI CCGC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BcoDI GTCTC 1 cut(s) 119
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmsI GCATC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 29
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 121
Bsh1236I CGCG 2 cut(s) 63, 70
Bsh1285I CGRYCG 2 cut(s) 33, 132
BshVI ATCGAT 1 cut(s) 29
BsiEI CGRYCG 2 cut(s) 33, 132
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 30, 129
BspACI CCGC 1 cut(s) 96
BspDI ATCGAT 1 cut(s) 29
BspFNI CGCG 2 cut(s) 63, 70
BssMI GATC 2 cut(s) 30, 129
Bst4CI ACNGT 1 cut(s) 142
BstF5I GGATG 1 cut(s) 17
BstFNI CGCG 2 cut(s) 63, 70
BstKTI GATC 2 cut(s) 33, 132
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 30, 129
BstMCI CGRYCG 2 cut(s) 33, 132
BstUI CGCG 2 cut(s) 63, 70
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 47
Bsu15I ATCGAT 1 cut(s) 29
BsuTUI ATCGAT 1 cut(s) 29
BtsCI GGATG 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 29
CviAII CATG 1 cut(s) 116
CviJI RGCY 1 cut(s) 107
CviKI_1 RGCY 1 cut(s) 107
DpnI GATC 2 cut(s) 32, 131
DpnII GATC 2 cut(s) 30, 129
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 1 cut(s) 119
FaiI YATR 2 cut(s) 26, 117
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HapII CCGG 1 cut(s) 45
Hin1II CATG 1 cut(s) 119
HinfI GANTC 1 cut(s) 35
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 110
Hpy99I CGWCG 3 cut(s) 75, 146, 149
HpyAV CCTTC 2 cut(s) 74, 115
HpyCH4III ACNGT 1 cut(s) 142
Hsp92II CATG 1 cut(s) 119
Kzo9I GATC 2 cut(s) 30, 129
LpnPI CCDG 1 cut(s) 58
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 26
MalI GATC 2 cut(s) 32, 131
MboI GATC 2 cut(s) 30, 129
MboII GAAGA 1 cut(s) 52
MnlI CCTC 2 cut(s) 68, 178
MspI CCGG 1 cut(s) 45
MvnI CGCG 2 cut(s) 63, 70
NdeII GATC 2 cut(s) 30, 129
NlaIII CATG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 3 cut(s) 35, 67, 138
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 136
Ple19I CGATCG 2 cut(s) 33, 132
PvuI CGATCG 2 cut(s) 33, 132
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 30, 129
SfaNI GCATC 1 cut(s) 26
SgeI CNNG 6 cut(s) 57, 74, 81, 86, 122, 128
SsiI CCGC 1 cut(s) 96
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 5 cut(s) 29, 33, 38, 56, 147
TfiI GAWTC 1 cut(s) 35
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.