Rh4CG454900

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000223
Physical Location & Seq
Forward (+)
68791772 .. 68793052
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG454900.1

Sequence Viewer

Length: 801 bp
ATGGTAACATTTTCGACTGGGGAGTATGTTGATTACATCTTTCCCTTAGATTGGAGGAATTCATTGAGACAGAATATGATTTCTCTTAGAAGAACTGATGCTTCAAAGAATGTGCTGAATCAAGTTATAGTTGAATATGCCAGCTTGAAGGACGAGCTGTCTTATGGGCAGATTGGAAGGATCGCAATGATCATTCTTGGGTCAGGTAAGCTGCTGAATACTGAGCTCTCTGTTCAGCTTGTGAAAAAGCTTGAAATCAATACACCGTGGAAGGCCTTCATTGAGAATCTCTGTGCAAGCATTGGACCTGAACATACCCATCAGGAACCAATAGAGGTGTCTGTCATGTGGTGGTTACATGAGGCTTTGGTTGAAACTTATAGCGCCAACTGGAGGGAGGTTTCCGACTACATAACACCTGGTTGCTTCTTGTATCTTGTGGAGCGCCTTCTGTTTTCAGCAAGTTGCTCTCAAGGTTTTGTCATCACTACAAGTTCTTGCTTTATTGAATGGCTGATATGCCAGGATGAAGATACCAGCTTACGCTCCATGGTGACTGGTGGAAGTCCTTCTCTGGAAGACATTCTTCCATTTGTGATTACTGTGGTTCGCGAGTGTATTTTTATCAAGAAGGATATGATTGAATGGATTGAGAAGTCTGACAGAAATTGGAGGCAGTATTATGAGCCACTCATGTTGCGATTGTGGCCTACCCAAATTGCTGATGCTTCTTGGTCTGCCGATGCAGCCCCAGCTATCCTTGAGGGTGGTGCTCCCGTAGTGGCCAGTGGTTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

266

Amino Acids

30.3

Weight (kDa)

4.71

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 792
AccII CGCG 1 cut(s) 612
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 783
AcsI RAATTY 1 cut(s) 58
AfiI CCNNNNNNNGG 3 cut(s) 51, 393, 792
AgsI TTSAA 7 cut(s) 105, 134, 148, 254, 374, 509, 644
AhdI GACNNNNNGTC 1 cut(s) 157
AjnI CCWGG 2 cut(s) 418, 522
AluBI AGCT 8 cut(s) 144, 157, 211, 226, 238, 250, 540, 755
AluI AGCT 8 cut(s) 144, 157, 211, 226, 238, 250, 540, 755
Alw21I GWGCWC 2 cut(s) 228, 775
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 188
AoxI GGCC 3 cut(s) 273, 707, 783
ApeKI GCWGC 2 cut(s) 211, 746
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 3 cut(s) 275, 568, 582
AspLEI GCGC 2 cut(s) 386, 447
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 565
AvaII GGWCC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 785
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 2 cut(s) 228, 775
BbvI GCAGC 2 cut(s) 198, 758
BccI CCATC 1 cut(s) 327
BciT130I CCWGG 2 cut(s) 420, 524
BclI TGATCA 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 61
BfoI RGCGCY 2 cut(s) 387, 448
BisI GCNGC 2 cut(s) 212, 747
BlsI GCNGC 2 cut(s) 213, 748
Bme1390I CCNGG 2 cut(s) 420, 524
Bme18I GGWCC 1 cut(s) 305
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 420, 524
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 3 cut(s) 88, 715, 733
BmuI ACTGGG 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 412
BpuEI CTTGAG 2 cut(s) 456, 782
BsaJI CCNNGG 2 cut(s) 266, 549
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 393, 792
Bse1I ACTGG 4 cut(s) 22, 395, 562, 786
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 2 cut(s) 420, 524
BseDI CCNNGG 2 cut(s) 266, 549
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 3 cut(s) 51, 393, 792
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 4 cut(s) 22, 395, 562, 786
BseXI GCAGC 2 cut(s) 198, 758
BseYI CCCAGC 1 cut(s) 751
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 3 cut(s) 275, 709, 785
BsiHKAI GWGCWC 2 cut(s) 228, 775
BslI CCNNNNNNNGG 3 cut(s) 51, 393, 792
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 3 cut(s) 275, 709, 785
Bsp1286I GDGCHC 2 cut(s) 228, 775
Bsp143I GATC 2 cut(s) 180, 189
Bsp19I CCATGG 1 cut(s) 549
Bsp68I TCGCGA 1 cut(s) 612
BspANI GGCC 3 cut(s) 275, 709, 785
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 1 cut(s) 612
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 4 cut(s) 22, 395, 562, 786
BssECI CCNNGG 2 cut(s) 266, 549
BssMI GATC 2 cut(s) 180, 189
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 2 cut(s) 420, 524
Bst4CI ACNGT 2 cut(s) 267, 604
BstC8I GCNNGC 2 cut(s) 142, 298
BstDEI CTNAG 3 cut(s) 46, 86, 222
BstDSI CCRYGG 2 cut(s) 266, 549
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 1 cut(s) 612
BstH2I RGCGCY 2 cut(s) 387, 448
BstHHI GCGC 2 cut(s) 386, 447
BstKTI GATC 2 cut(s) 183, 192
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 180, 189
BstMWI GCNNNNNNNGC 3 cut(s) 706, 746, 752
BstNI CCWGG 2 cut(s) 420, 524
BstSCI CCNGG 2 cut(s) 418, 522
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 2 cut(s) 198, 758
BstV2I GAAGAC 1 cut(s) 585
BsuRI GGCC 3 cut(s) 275, 709, 785
BtgI CCRYGG 2 cut(s) 266, 549
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 793
BtuMI TCGCGA 1 cut(s) 612
Cac8I GCNNGC 2 cut(s) 142, 298
CfoI GCGC 2 cut(s) 386, 447
Cfr13I GGNCC 1 cut(s) 305
CsiI ACCWGGT 1 cut(s) 418
CspCI CAANNNNNGTGG 2 cut(s) 678, 713
CviAII CATG 4 cut(s) 346, 359, 550, 694
DdeI CTNAG 3 cut(s) 46, 86, 222
DpnI GATC 2 cut(s) 182, 191
DpnII GATC 2 cut(s) 180, 189
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 783
Eam1105I GACNNNNNGTC 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 549
Eco147I AGGCCT 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 418, 522
EcoT14I CCWWGG 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 4 cut(s) 349, 362, 553, 697
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FatI CATG 4 cut(s) 345, 358, 549, 693
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 212, 747
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 212, 747
GlaI GCGC 2 cut(s) 385, 446
GluI GCNGC 2 cut(s) 212, 747
GsaI CCCAGC 1 cut(s) 755
GsuI CTGGAG 1 cut(s) 412
HaeII RGCGCY 2 cut(s) 387, 448
HaeIII GGCC 3 cut(s) 275, 709, 785
HhaI GCGC 2 cut(s) 386, 447
Hin1II CATG 4 cut(s) 349, 362, 553, 697
Hin6I GCGC 2 cut(s) 384, 445
HinP1I GCGC 2 cut(s) 384, 445
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 2 cut(s) 118, 286
HphI GGTGA 1 cut(s) 565
Hpy188I TCNGA 2 cut(s) 406, 661
Hpy188III TCNNGA 4 cut(s) 323, 575, 611, 628
HpyAV CCTTC 7 cut(s) 142, 171, 265, 286, 458, 579, 625
HpyCH4III ACNGT 2 cut(s) 267, 604
HpyCH4V TGCA 2 cut(s) 296, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 706, 746, 752
HpyF3I CTNAG 3 cut(s) 46, 86, 222
Hsp92II CATG 4 cut(s) 349, 362, 553, 697
HspAI GCGC 2 cut(s) 384, 445
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 2 cut(s) 180, 189
LmnI GCTCC 3 cut(s) 442, 551, 778
Lsp1109I GCAGC 2 cut(s) 198, 758
LweI GCATC 3 cut(s) 88, 715, 733
MabI ACCWGGT 1 cut(s) 418
MaeIII GTNAC 3 cut(s) 4, 354, 553
MalI GATC 2 cut(s) 182, 191
MboI GATC 2 cut(s) 180, 189
MboII GAAGA 4 cut(s) 102, 542, 578, 590
MhlI GDGCHC 2 cut(s) 228, 775
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 3 cut(s) 58, 667, 717
MluNI TGGCCA 1 cut(s) 785
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 7 cut(s) 48, 328, 355, 387, 391, 666, 757
Mox20I TGGCCA 1 cut(s) 785
MroXI GAANNNNTTC 3 cut(s) 275, 568, 582
MscI TGGCCA 1 cut(s) 785
Msp20I TGGCCA 1 cut(s) 785
MspR9I CCNGG 2 cut(s) 420, 524
MvaI CCWGG 2 cut(s) 420, 524
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 3 cut(s) 706, 746, 752
NcoI CCATGG 1 cut(s) 549
NdeII GATC 2 cut(s) 180, 189
NlaIII CATG 4 cut(s) 349, 362, 553, 697
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 553
NruI TCGCGA 1 cut(s) 612
PceI AGGCCT 1 cut(s) 275
PdmI GAANNNNTTC 3 cut(s) 275, 568, 582
PfeI GAWTC 2 cut(s) 118, 286
PflMI CCANNNNNTGG 1 cut(s) 792
PkrI GCNGC 2 cut(s) 213, 748
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 418, 522
PspFI CCCAGC 1 cut(s) 751
PspGI CCWGG 2 cut(s) 418, 522
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 305
RruI TCGCGA 1 cut(s) 612
SacI GAGCTC 1 cut(s) 228
SatI GCNGC 2 cut(s) 212, 747
Sau3AI GATC 2 cut(s) 180, 189
Sau96I GGNCC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 420, 524
SduI GDGCHC 2 cut(s) 228, 775
SexAI ACCWGGT 1 cut(s) 418
SfaNI GCATC 3 cut(s) 88, 715, 733
SinI GGWCC 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 471, 761
SmoI CTYRAG 2 cut(s) 471, 761
Sse9I AATT 3 cut(s) 58, 667, 717
SseBI AGGCCT 1 cut(s) 275
SstI GAGCTC 1 cut(s) 228
StuI AGGCCT 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 418, 522
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 2 cut(s) 267, 604
TaqI TCGA 1 cut(s) 14
TasI AATT 3 cut(s) 58, 667, 717
TfiI GAWTC 2 cut(s) 118, 286
TscAI CASTG 1 cut(s) 793
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 2 cut(s) 211, 746
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 3 cut(s) 51, 268, 543
TspRI CASTG 1 cut(s) 793
Van91I CCANNNNNTGG 1 cut(s) 792
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 1 cut(s) 58
XmnI GAANNNNTTC 3 cut(s) 275, 568, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.