Rmu_sc0003001.1_g000007

TPR and ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003001.1
Physical Location & Seq
Forward (+)
55570 .. 72482
16913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003001.1_g000007.1.cds

Sequence Viewer

Length: 9960 bp
atgccaactccgggctatgtgaggattagagctgtgttagcgtgtgcacctattgcaatgccaactccgggctatgtgaggattagagctgtgttagcggtaggcttcaaagaagataataggaagtgggttttctgtgaaacggttcataatcataggctctgtgttgaagaaggcagagaagaaaagcaagagtctttggtggagatcatggaggtttccggcaagaaaaagatcaagcctgacccttttactgatactgtgttttcttggtccctggagaacattttcaatgaggatctttacaaagacaaggtgaaaaagattcctgaatcatttcaatcggctcagcattactttgggtgttatatatatcctttactggaagaaacccgagcagacttgcattcaagtatggaatctcttaatacagcaccgtttgctgaagtagtgggttttgaagaagccaagccatatggaacaaagctatatgatgtcaaggttgattactggcgaaacaggtttcgtgatagtggcaaggaaccatataaaactttgcccggtgatctttttgttttagctgatgctaaacctgaaactgtttatgatttacaaggagtaggggggtcatgggcttttgcatccgccactaatgtctcagaaagtgagaatgaagatgacagtacctctctttttttcaaagtcaaggcatcaaaagagtttgaagtcgaaaatagcaggtcatcactttttctagttttcttggtgaatttaacccgtgatggaagaatttggaaagcgttgcacatgtccagaaatctgaagattatcaacgaagttctatgcactgattctatggttcagaaagatttctgctctgaaaggaataatgacatctggaatcagagtatagttgagagtttttcatctggattgaatgagtcccaaactggggcagtgatggcctgccttgaaatgctgcattctggtgaaaagtctgctgtgcaacttatctggggtcctcctggtactggaaaaacaaaaaccacagttactctgctttcaaccctgctacagatgaatcgtaagactcttatttgtgctccaacaaatgttgcaataactggagttgcttctcttcttgtgaagatggtgagtaaggcagagccaaataatttgttttgttctttaggagagatacttctatttgggaataaggagcgactcaaaattggttcagacattgaagaaatttatatggattgccgtgtcaaaaggcttgtagattgtttggggccaagggctggttggaggcattgctttgcttccatgataggtttacttgaggattgtgtttctgattaccatattttcttggaaaatgagttcatgaacgacacagaacaaaagaatgatagtgaaacgaaagataaagaatgcagaagaggtgctgaagttaaaaaggagaagtgcaaaacatttgttcaatttttgagagatagatttgcgtctactgcaacgccgttaagaaattgcatttctgtgttctgtactcatatagggaaaaattatatttcagtagacaaattccaagacttggttttgcttacccagttagttaattcctttgagttactgttgtctcaacataatgttgttcctgaagcgttggaagaactcttttctcattcggatgttaaagatgtgtccgagtcgtttgtaggcaactcctttgatctttgtatgatgagaagggattgcctttcagctttacgcactctacaggattctcttagtcaacttaaacttccaaatattaggaatgaggaatctatacaggagttctgttttcaaagagcatctctaatattttgcactgcatctagttcatataagctgcacagagtggcaatggaaccactaagcattgttgttattgacgaggctgcacagctaaaagagtgtgagtcaacaatacccctgcagcttccaggtgtgaagcatgctgttcttgttggtgacgagtgtcagttaccagcaacggtaaaaagcaatgtttctgatgaagctggttttgcaagaagcttgtttgagaggttgagcttaatgggtcattcaaaacattgttatatatatcctttactggaagaaacccgagcagacttgcattcaagtatggaatctcttaatacagcaccgtttgctgaagtagtgggttttgaagaagccaagccatatggaacaaagctatatgatgtcaaggttgattactggttcaataagtttcgtgatagtggcaaggaaccatataaaactttgcccggtgatctttttgttttagctgatgctaaacctgaaactgtttatgatttacaaggagtaggggggtcatgggcttttgcatccgccactaatgtctcagaaagtgagaatgaagatgacagtacctctctttgtttcaaagtcaaggcatcaaaagagtttgaagtcgaaaatagcaggtcatcactttttctagttttcttggtgaatttaacccgtgatggaagaatttggaaagcgttgcacatgtccagaaatctgaagattatcaacgaagttctatgcactgattctatgaaagatttctgctctgaaaggaataatgacatctggaatcagagtatagttgagagtttttcatctggattgaatgagtcccaaactggggcagtgatggcctgccttgaaatgctgcattctggtgaaaagtctgctgtgcaacttatctggggtcctcctggtactggaaaaacaaaaaccacagttactctgctttcaaccctgctacagatgaatcgtaagactcttatttgtgctccaacaaatgttgcaataactggagttgcttctcttcttgtgaagatggtgagtaaggcagagccaaataatttgttttgttctttaggagagatacttctatttgggaataaggagcgactcaaaattggttcagacattgaagaaatttatatggattgccgtgtcaaaaggcttgtagattgtttggggccaagggctggttggaggcattgctttgcttccatgataggtttacttgaggattgtgtttctgattaccatattttcttggaaaatgagttcatgaacgacacagaacaaaagaatgatagtgaaacgaaagataaagaatgcagaagaggtgctgaagttaaaaaggagaagtgcaaaacatttgttcaatttttgagagatagatttgcgtctactgcaacgccgttaagaaattgcatttctgtgttctgtactcatatagggaaaaattatatttcagtagacaaattccaagacttggttttgcttacccagttagttaattcctttgagttactgttgtctcaacataatgttgttcctgaagcgttggaagaactcttttctcattcggatgttgaagatgtgtccgagtcgtttgtaggcaactcctttgatctttgtatgatgagaagggattgcctttcagctttacgcactctacaggattctcttagtcaacttaaacttccaaatattaggaatgaggaatctatacgggagttctgttttcaaagagcatctctaatattttgcactgcatctagttcatataagctgcacagagtggcaatggaaccactaagcattgttgttattgacgaggctgcacagctaaaagagtgtgagtcaacaatacccctgcagcttccaggtgtgaagcatgctgttcttgttggtgacgagtgtcagttaccagcaacggtaaaaagcaatgtttctgatgaagctggttttgcaagaagcttgtttgagaggttgagcttaatgggtcattcaaaacatattttaaatatgcaatacagaatgcatccttcaataagtttattcccaaattcaaatttctatgatgacttgatccgggatgctccaaatgtaaaacgaagaaactatgagaagcactatcttccaggagcaatgtttggtccttattcttttataaatgtgattggtggaagagaggagaaagatgaggatggacatagtcggaaaaatatggtggaggttgctgttgtttcaaaaatactgcggaatctgttcaaagaatgggttgaatcaaaacagagactcagtattggtatagtgtctccctatgctgctcaagtagtcgcaattaaggacagagtgggtaagaaatatgatcagcttgatggctttgaagtgaaggtaaaaacagttgatgggtttcaaggtggggaagaggacataattataatatccactgtacgatccaacagccaccaatcacttgaattcatttcaaaatcgcaaagagttaatgtctctcttacaagggcaaggcactgtttgtggattttggggaatgaaagaacgctttccgatggtgaatctgtttggaaggccttggtccttgatgccaaaagtcgtcaatgcttctttaatgccgatgaagacaaggatttagccaaggccgtattagaggtcaagaaagagtttgaccaatttgatgatttgctcaatgccgacagtgttcttttcagaagtgctagatggaaggtacttttcagtgaatactttctgaagtcattcaagaaactgacatcagtccgcttgaagaagtcggtgctaaatcttctactgaagctttccagtggttggagacctaagaggcaaagtgttgagacactttctggtagctgttccatgatcttgaagaaatttaaagttgaaggtctgtacattgtttgcactaatgacatctcaaagaacttacaatacgttcaagtgttaaagatctgggacatgttgcctctggaggatatcccaaagttgataaaccgcctggatggtattttcaacagatatactgataactttatcaatctttgcaaggagaagtgtctcgatggtgatctagaggttccaaaaagctggtcaccgtctttggaattttcccggtttaaggatcttagcatcagtgaagctcagagtgatttagttggtgacacttctgattgtagaagctatgttgagaattcacaggttagcgagagtttgttgctgatgaaattttattccttatcatctggggtagtaaaccacttgctgtcagatcgtgagggtagagaactagatcttccatttgtagttacagatgaagagatggagattatcctttatcgtagaagttcctttatagtgggacggtcgggaactgggaaaaccacagttttaaccatgaaattgtttcaaaaagaacagtgcagccaatttgcagttgaaggatgctatagtagtcaagatactaacaaggttgagcagagttctgcagctactgaagggaatgttctgcgccagctttttgtgacagtgagtcctaagctatgttttgccatcaagcgacatgtttcacacttgaaaagttttgcatgtggtggagataactcaactgactcaactgaaagaggtttaattgatatggctgattttgatgaggaggaaacccaattcaaggatatccaagattcatttcacgatattcctccaagttcttacccacttgtcattacatttcataagtttttgatgatgctcgatggaacattgagtaactcatacattgaaagattccttaatgtgacagctaatgttggccattttaggagttcgaaatcagttgcatttcagagctttataaggacgaaagaagttaattatgagaagtttagctctttctattggccccgttttaatactcagaaaacaaagaagcttgacgtttcaagagtctttatagagattatttcttatataaaaggtggcttaggagctatagatgcatgtgatggtaaactcagccgggagggttatgttcaaatgtgcgagggccggggttctaatttgagcaagcaaaagagagaagcaatatacgatgtttttcaggcttatgaaaagttgaagatggaaaatggtgaattcgatctggctgattttgtaattgatcttcaccgtcggctcaagcatgaaaagtatgagggtgatcagatggaatttgtttatattgatgaggttcaagatctcacaatgagtcaaattgctttgtttaaacacacgtgcaacaatgttgaagagggatttgtcttttctggtgatacagcacaaacaatagcaaggggtattgacttcaggtttcaggatatacgacatctgttctacaagaagttcgtattggagtcaagaagcaataacaatgatgaaagaaaagaaaaaggcctcatctctgaattacttcagttgactcaaaacttccgtactcatgccggtatattgaagttatcacaaagcattgttgagctactgtatcggtttttccccttttctgtcgatgtgttgaaacctgaaaccagtctgatttatggggaagctccagttttgcttgaatctggagaaaacgaaaatgcaatcatgaaaatttttggaaacagtggaaatatagttggctttggtgcagagcaggtgattttggtgcgagatgatagtgctcgacaagaaatatccaaatttgtagggaagcatgctcttgtcctaaccatagtggagtgtaagggccttgagtttcaggatgtcctcttatacaactttttcggcacatcacctttgaaaaatcagtggagggttatatatgattatatgaaggaacaaaatttactcgactccacattacctaagcgctttccaagtttcagtgaatcaaaacacaacatattgtgctctgaactgaagcaattatatgtggctgttactcgaacaagacagagattgtggatttgtgaaaatgtggaagacctctcgaaacctatgtttgactattggaagaaaaaatgtcttgtgcaacaaaggcagctagatgattcacttgcccaggcaatgcaagtggcaagcagtccagaggagtggaaatcacgaggcattaagctatatcatgaacataactatgaaatggccacaatgtgctttgaaagagctggtgacacttactgggaaaggaggtctaaagcctccggccttaaagctattgctgaccgtatgcgaacatcaaatcctgaagaggctaaatctattcttagagaagctgctgaaatatttgatgctattggcaaggccgattctgctgcgagatgtttttctgatttgggggagtatgaaagagcagctaggatatatttagaaaaatgcggagaatctgaacttcaaagagcagcagagtgtttttcactagcgggatgctatgaggatgctgcagatgtctatgccaagggaaattttttctcggagtgtctcactgtttgtgcaaatgggaaactatttgaaatgggtttgcattatattaatgattggaaacagcatgctgttgaggactgtgctaaggctagtagaggagaagaaatatataaaatggagcaggaatttttagagagctgcgcacttcactatcataagttgaaagataacagattcatgatgaaatttgtgaaagctttcaattctataatattgatgcgggactttttgaagaatatagggagccttgatgagcttttgtcattggaggaagaatttggaaattatctggaagccgcaaacatcgcccagcttaaaggtgaaatcctacttgaatctgatttccttggaaaggcaggtaagttcaaagaggcctcactgcatattctgttttatgtaatttccacccatgaagaagtttccacaaaaggaggagcttttgacaatggccaagataacttggctgttttgaaacatcaaatggatgcttctgaaagacataagagtattagaggtgaattattatcggctcgaaaaattttggacgcccatctctctccaagaactgataagtatttttgggagaaagaattgattggagatcttgtaaagcattcaaaagataaaatatctagaaatcaggtgtccattgattcgcttgtctactactggaatttctggaaggagaagattcttcacatcattgaatctgtaggatgtgtggaaactccggggtacaatagttatgtacagttctgttttacttgtttaggagttaggaggttgtatcataatctgaatccaatctatgttttactggtccctgatgctgattgggttagaggtctggacaaaaggcatttgaaaagttatgggaagttggtctccattgatgttcatcagctcattccagcagctcagtattattggagttcagaactgctctctgttggcatcaaagttttggaaaagcttgaagcacttttcaagttcccactaaagaattctgactcgacgttcttccagtgccgggctcttacccttatctatgatgttgcaagaaatcttttggattccaaatgtctgaagccaaggtatcaagattgcttgacactacagaatctggtaacattttcgactggggagtatgttgattacatctttcccttagattggaggaattcattgagacagaatatgatttctcttagaagaactgatgcttcaaagaatgttctgaatcaagttatagttgaatataccagctcaaagaacgagctgtcttatgggcagattggaaggatcgcaatgatcattctcgggtcaggtaagctgctgaataatgggctctctgttcagcttgtcaaaaagcttgaaattaatacaccatggaaggccttcattgaggatctctgtactagcgttggacctggacatacccgtcaggaaccaatagaggtgtctgtcatgttgcggttacatgaggctttggttgaaacttatagtgtcaactggaggaaggtttccaactacatatcacctggttgcttcttgtatcttttggagcgccttctgttttcagcaagttgctatcaaggttttgtcatcactacaagttcttgctttattgaatggctgatataccaggatgaagataccagcttacgttccatagtgactggtgggcgtccttctctgggaaccattcttccatttgtgattaatgtggttagcgattgtattttcaagaagaaggatatgattgaatggattgagaagtctgacagaaattggaggaagtattatcagtcactcatgttgcggttggttactgtcttgtgtttgattaatttgaacttccgcttgtgtttggatataatccatgatttgctggggaggaactttatcactgaactcctaccatgggagttttatgatgcacttaggaggaggaggaaatccaattctctcagtttaaatgttaatgtgcttgctggagctctcaagaagattgataatacattggtgattgcgagtttcggggttaattgttcagggttttacagttcagatgccatctttgtcgacatgactaccaatcaatgcaaggatgacatattgagaaaatggtttccaaagccgcctgtcattcaagttgcatctgttgaaaaaggtagaagttcttgcagtcctgcactctctgcaactgattctgaagaaggtaagagttctaaacttgctccttcagaatccagcttggtgaaagagactgctgttgcagctgataagcagtgtgaagctgaagacggtcgcagtaaagatgagggtaattgcatatccaatgcatcagatcagcagtgtcctggcccaaactcggggcagcatgacgctgaagacagccacacaaaaggtgaggaaaacaacgcatccactgagtcaaatccgacatgtgaacaagacggtggtacttccaccccatctggcagtaaagaagctggaagcaaggcgaagaacaagacaaggggcaagaacaagaaaaacaagaagaaaggaggcaagaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

3319

Amino Acids

376.59

Weight (kDa)

6.11

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 4034, 4307, 5750
AarI CACCTGC 1 cut(s) 6559
AasI GACNNNNNNGTC 1 cut(s) 8835
Acc16I TGCGCA 1 cut(s) 7537
Acc36I ACCTGC 4 cut(s) 729, 2490, 6559, 7742
AccB7I CCANNNNNTGG 5 cut(s) 1304, 1597, 3059, 3352, 4710
AccI GTMKAC 6 cut(s) 1511, 1581, 3266, 3336, 8058, 9480
AclWI GGATC 6 cut(s) 306, 3946, 4317, 5028, 8705, 8811
AcoI YGGCCR 3 cut(s) 5707, 7056, 7843
AcvI CACGTG 1 cut(s) 6168
AcyI GRCGYC 2 cut(s) 7941, 9082
AdeI CACNNNGTG 3 cut(s) 1906, 3661, 7065
AfeI AGCGCT 1 cut(s) 6785
AflIII ACRYGT 6 cut(s) 807, 2568, 4857, 5458, 6165, 9842
AhdI GACNNNNNGTC 1 cut(s) 5427
AjuI GAANNNNNNNTTGG 4 cut(s) 5568, 5600, 6266, 6298
AloI GAACNNNNNNTCC 8 cut(s) 1370, 1402, 3125, 3157, 7138, 7170, 9088, 9120
Alw21I GWGCWC 6 cut(s) 49, 1105, 2860, 6598, 6827, 9397
Alw44I GTGCAC 1 cut(s) 45
AlwI GGATC 6 cut(s) 306, 3946, 4317, 5028, 8705, 8811
AlwNI CAGNNNCTG 2 cut(s) 5390, 8518
Ama87I CYCGRG 4 cut(s) 393, 2154, 8714, 9769
Aor51HI AGCGCT 1 cut(s) 6785
ApaLI GTGCAC 1 cut(s) 45
ArsI GACNNNNNNTTYG 2 cut(s) 4973, 5005
AseI ATTAAT 4 cut(s) 7443, 8775, 9117, 9243
AspLEI GCGC 4 cut(s) 5409, 6786, 7538, 8964
AsuII TTCGAA 1 cut(s) 5723
AvaI CYCGRG 4 cut(s) 393, 2154, 8714, 9769
AvaII GGWCC 7 cut(s) 273, 1019, 2774, 4019, 4462, 8215, 8822
BaeGI GKGCMC 1 cut(s) 49
BaeI ACNNNNGTAYC 2 cut(s) 8122, 8155
BalI TGGCCA 3 cut(s) 5709, 7058, 7845
BanII GRGCYC 3 cut(s) 8431, 8745, 9397
BarI GAAGNNNNNNTAC 2 cut(s) 6042, 6074
BauI CACGAG 1 cut(s) 7017
BbrPI CACGTG 1 cut(s) 6168
BbsI GAAGAC 4 cut(s) 4512, 6903, 9705, 9795
Bbv12I GWGCWC 6 cut(s) 49, 1105, 2860, 6598, 6827, 9397
BceAI ACGGC 5 cut(s) 1251, 1507, 3006, 3262, 4511
BcgI CGANNNNNNTGC 2 cut(s) 7208, 7242
BclI TGATCA 3 cut(s) 4234, 6094, 8706
BfoI RGCGCY 2 cut(s) 6787, 8965
BfuAI ACCTGC 4 cut(s) 729, 2490, 6559, 7742
BglII AGATCT 4 cut(s) 4848, 5188, 6130, 7996
BlpI GCTNAGC 1 cut(s) 348
Bme18I GGWCC 7 cut(s) 273, 1019, 2774, 4019, 4462, 8215, 8822
BmeRI GACNNNNNGTC 1 cut(s) 5427
BmeT110I CYCGRG 4 cut(s) 393, 2154, 8714, 9769
BmrI ACTGGG 7 cut(s) 960, 1606, 2715, 3361, 5280, 7102, 8544
BmuI ACTGGG 7 cut(s) 960, 1606, 2715, 3361, 5280, 7102, 8544
BoxI GACNNNNGTC 3 cut(s) 2025, 3780, 4658
BpiI GAAGAC 4 cut(s) 4512, 6903, 9705, 9795
BpmI CTGGAG 8 cut(s) 299, 1146, 2901, 4889, 6465, 6519, 8929, 9411
Bpu10I CCTNAGC 4 cut(s) 5433, 5878, 6780, 7479
Bpu1102I GCTNAGC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 5723
BpuEI CTTGAG 6 cut(s) 1364, 3119, 4179, 6056, 6686, 9383
BsaAI YACGTR 1 cut(s) 6168
BsaBI GATNNNNATC 2 cut(s) 4965, 8292
BsaHI GRCGYC 2 cut(s) 7941, 9082
BsaI GGTCTC 2 cut(s) 4708, 8284
BsaXI ACNNNNNCTCC 2 cut(s) 7986, 8016
Bse118I RCCGGY 1 cut(s) 6374
Bse8I GATNNNNATC 2 cut(s) 4965, 8292
BseJI GATNNNNATC 2 cut(s) 4965, 8292
BseRI GAGGAG 7 cut(s) 4070, 5564, 7019, 7506, 7842, 9358, 9361
BseSI GKGCMC 1 cut(s) 49
BseYI CCCAGC 2 cut(s) 7704, 9286
BsgI GTGCAG 7 cut(s) 1883, 1932, 3638, 3687, 5338, 6582, 9573
Bsh1285I CGRYCG 2 cut(s) 5264, 9706
BsiEI CGRYCG 2 cut(s) 5264, 9706
BsiHKAI GWGCWC 6 cut(s) 49, 1105, 2860, 6598, 6827, 9397
BsiHKCI CYCGRG 4 cut(s) 393, 2154, 8714, 9769
BslFI GGGAC 7 cut(s) 259, 928, 2683, 4868, 5271, 7631, 8201
BsmFI GGGAC 7 cut(s) 259, 928, 2683, 4868, 5271, 7631, 8201
BsmI GAATGC 8 cut(s) 406, 982, 1442, 2167, 2737, 3197, 3906, 8008
Bso31I GGTCTC 2 cut(s) 4708, 8284
BsoBI CYCGRG 4 cut(s) 393, 2154, 8714, 9769
Bsp119I TTCGAA 1 cut(s) 5723
Bsp1286I GDGCHC 8 cut(s) 49, 1105, 2860, 6598, 6827, 8431, 8745, 9397
Bsp1407I TGTACA 2 cut(s) 4791, 8143
Bsp1720I GCTNAGC 1 cut(s) 348
Bsp19I CCATGG 2 cut(s) 8783, 9317
BspHI TCATGA 5 cut(s) 1389, 3144, 6519, 7036, 7572
BspMAI CTGCAG 4 cut(s) 1986, 3741, 5386, 7357
BspMI ACCTGC 4 cut(s) 729, 2490, 6559, 7742
BspPI GGATC 6 cut(s) 306, 3946, 4317, 5028, 8705, 8811
BspT104I TTCGAA 1 cut(s) 5723
BspTNI GGTCTC 2 cut(s) 4708, 8284
BsrFI RCCGGY 1 cut(s) 6374
BsrGI TGTACA 2 cut(s) 4791, 8143
BssAI RCCGGY 1 cut(s) 6374
BssNI GRCGYC 2 cut(s) 7941, 9082
BssSI CACGAG 1 cut(s) 7017
BssT1I CCWWGG 9 cut(s) 1298, 3053, 4458, 4521, 7368, 7741, 8486, 8783, 9317
Bst2BI CACGAG 1 cut(s) 7017
Bst6I CTCTTC 9 cut(s) 1143, 1438, 2898, 3193, 4045, 4287, 5208, 6177, 7155
BstACI GRCGYC 2 cut(s) 7941, 9082
BstAPI GCANNNNNTGC 4 cut(s) 53, 440, 2201, 9596
BstAUI TGTACA 2 cut(s) 4791, 8143
BstBAI YACGTR 1 cut(s) 6168
BstBI TTCGAA 1 cut(s) 5723
BstDSI CCRYGG 2 cut(s) 8783, 9317
BstEII GGTNACC 1 cut(s) 4989
BstENI CCTNNNNNAGG 1 cut(s) 7745
BstH2I RGCGCY 2 cut(s) 6787, 8965
BstHHI GCGC 4 cut(s) 5409, 6786, 7538, 8964
BstMCI CGRYCG 2 cut(s) 5264, 9706
BstPAI GACNNNNGTC 3 cut(s) 2025, 3780, 4658
BstPI GGTNACC 1 cut(s) 4989
BstSLI GKGCMC 1 cut(s) 49
BstV2I GAAGAC 4 cut(s) 4512, 6903, 9705, 9795
BstX2I RGATCY 7 cut(s) 298, 4848, 5020, 5188, 6130, 7996, 8803
BstXI CCANNNNNNTGG 2 cut(s) 4986, 7008
BstYI RGATCY 7 cut(s) 298, 4848, 5020, 5188, 6130, 7996, 8803
BtgI CCRYGG 2 cut(s) 8783, 9317
BtgZI GCGATG 1 cut(s) 7684
BtsI GCAGTG 7 cut(s) 963, 1875, 2718, 3630, 7772, 9692, 9758
BveI ACCTGC 4 cut(s) 729, 2490, 6559, 7742
CaiI CAGNNNCTG 2 cut(s) 5390, 8518
CciI TCATGA 5 cut(s) 1389, 3144, 6519, 7036, 7572
CfoI GCGC 4 cut(s) 5409, 6786, 7538, 8964
Cfr10I RCCGGY 1 cut(s) 6374
CseI GACGC 5 cut(s) 1497, 3252, 7949, 9071, 9791
CsiI ACCWGGT 1 cut(s) 8935
CspCI CAANNNNNGTGG 2 cut(s) 6969, 7004
DraI TTTAAA 4 cut(s) 3885, 4777, 6160, 9372
DraIII CACNNNGTG 3 cut(s) 1906, 3661, 7065
DrdI GACNNNNNNGTC 1 cut(s) 8835
DriI GACNNNNNGTC 1 cut(s) 5427
DseDI GACNNNNNNGTC 1 cut(s) 8835
EaeI YGGCCR 3 cut(s) 5707, 7056, 7843
Eam1104I CTCTTC 9 cut(s) 1143, 1438, 2898, 3193, 4045, 4287, 5208, 6177, 7155
Eam1105I GACNNNNNGTC 1 cut(s) 5427
EarI CTCTTC 9 cut(s) 1143, 1438, 2898, 3193, 4045, 4287, 5208, 6177, 7155
EciI GGCGGA 2 cut(s) 634, 2395
Ecl136II GAGCTC 1 cut(s) 9395
Eco130I CCWWGG 9 cut(s) 1298, 3053, 4458, 4521, 7368, 7741, 8486, 8783, 9317
Eco147I AGGCCT 4 cut(s) 4457, 6327, 7769, 8792
Eco24I GRGCYC 3 cut(s) 8431, 8745, 9397
Eco31I GGTCTC 2 cut(s) 4708, 8284
Eco32I GATATC 2 cut(s) 4876, 5572
Eco47I GGWCC 7 cut(s) 273, 1019, 2774, 4019, 4462, 8215, 8822
Eco47III AGCGCT 1 cut(s) 6785
Eco53kI GAGCTC 1 cut(s) 9395
Eco72I CACGTG 1 cut(s) 6168
Eco88I CYCGRG 4 cut(s) 393, 2154, 8714, 9769
Eco91I GGTNACC 1 cut(s) 4989
EcoICRI GAGCTC 1 cut(s) 9395
EcoNI CCTNNNNNAGG 1 cut(s) 7745
EcoO109I RGGNCCY 3 cut(s) 1019, 2774, 6661
EcoO65I GGTNACC 1 cut(s) 4989
EcoRI GAATTC 5 cut(s) 4346, 5089, 6029, 8398, 8575
EcoRV GATATC 2 cut(s) 4876, 5572
EcoT14I CCWWGG 9 cut(s) 1298, 3053, 4458, 4521, 7368, 7741, 8486, 8783, 9317
EcoT22I ATGCAT 3 cut(s) 3906, 5896, 9742
EcoT38I GRGCYC 3 cut(s) 8431, 8745, 9397
ErhI CCWWGG 9 cut(s) 1298, 3053, 4458, 4521, 7368, 7741, 8486, 8783, 9317
FaqI GGGAC 7 cut(s) 259, 928, 2683, 4868, 5271, 7631, 8201
FauI CCCGC 2 cut(s) 7327, 7608
FauNDI CATATG 2 cut(s) 475, 2236
FbaI TGATCA 3 cut(s) 4234, 6094, 8706
FblI GTMKAC 6 cut(s) 1511, 1581, 3266, 3336, 8058, 9480
FriOI GRGCYC 3 cut(s) 8431, 8745, 9397
FspI TGCGCA 1 cut(s) 7537
GlaI GCGC 4 cut(s) 5408, 6785, 7537, 8963
GsaI CCCAGC 2 cut(s) 7708, 9290
GsuI CTGGAG 8 cut(s) 299, 1146, 2901, 4889, 6465, 6519, 8929, 9411
HaeII RGCGCY 2 cut(s) 6787, 8965
HgaI GACGC 5 cut(s) 1497, 3252, 7949, 9071, 9791
HhaI GCGC 4 cut(s) 5409, 6786, 7538, 8964
Hin1I GRCGYC 2 cut(s) 7941, 9082
Hin6I GCGC 4 cut(s) 5407, 6784, 7536, 8962
HinP1I GCGC 4 cut(s) 5407, 6784, 7536, 8962
HincII GTYRAC 7 cut(s) 1799, 1971, 3554, 3726, 6351, 8905, 9481
HindII GTYRAC 7 cut(s) 1799, 1971, 3554, 3726, 6351, 8905, 9481
HindIII AAGCTT 7 cut(s) 2083, 3838, 4697, 5825, 7590, 8366, 8765
Hpy99I CGWCG 2 cut(s) 6069, 8413
HpyCH4IV ACGT 5 cut(s) 4833, 5832, 6167, 8411, 9061
HpySE526I ACGT 5 cut(s) 4833, 5832, 6167, 8411, 9061
Hsp92I GRCGYC 2 cut(s) 7941, 9082
HspAI GCGC 4 cut(s) 5407, 6784, 7536, 8962
Ksp22I TGATCA 3 cut(s) 4234, 6094, 8706
MabI ACCWGGT 1 cut(s) 8935
MaeII ACGT 5 cut(s) 4833, 5832, 6167, 8411, 9061
MflI RGATCY 7 cut(s) 298, 4848, 5020, 5188, 6130, 7996, 8803
MhlI GDGCHC 8 cut(s) 49, 1105, 2860, 6598, 6827, 8431, 8745, 9397
MlsI TGGCCA 3 cut(s) 5709, 7058, 7845
MluNI TGGCCA 3 cut(s) 5709, 7058, 7845
Mox20I TGGCCA 3 cut(s) 5709, 7058, 7845
Mph1103I ATGCAT 3 cut(s) 3906, 5896, 9742
MscI TGGCCA 3 cut(s) 5709, 7058, 7845
MslI CAYNNNNRTG 7 cut(s) 987, 1541, 1692, 2742, 3296, 3447, 7047
Msp20I TGGCCA 3 cut(s) 5709, 7058, 7845
MspA1I CMGCKG 1 cut(s) 9677
MssI GTTTAAAC 1 cut(s) 6160
Mva1269I GAATGC 8 cut(s) 406, 982, 1442, 2167, 2737, 3197, 3906, 8008
NcoI CCATGG 2 cut(s) 8783, 9317
NdeI CATATG 2 cut(s) 475, 2236
NmuCI GTSAC 9 cut(s) 2018, 3773, 4989, 5057, 5419, 5692, 7082, 9070, 9204
NsbI TGCGCA 1 cut(s) 7537
NsiI ATGCAT 3 cut(s) 3906, 5896, 9742
NspV TTCGAA 1 cut(s) 5723
PaeI GCATGC 4 cut(s) 2006, 3761, 6632, 7463
PagI TCATGA 5 cut(s) 1389, 3144, 6519, 7036, 7572
PaqCI CACCTGC 1 cut(s) 6559
PceI AGGCCT 4 cut(s) 4457, 6327, 7769, 8792
PciI ACATGT 5 cut(s) 807, 2568, 4857, 5458, 9842
PctI GAATGC 8 cut(s) 406, 982, 1442, 2167, 2737, 3197, 3906, 8008
PflFI GACNNNGTC 1 cut(s) 4077
PflMI CCANNNNNTGG 5 cut(s) 1304, 1597, 3059, 3352, 4710
PfoI TCCNGGA 2 cut(s) 3954, 4003
PmaCI CACGTG 1 cut(s) 6168
PmeI GTTTAAAC 1 cut(s) 6160
PmlI CACGTG 1 cut(s) 6168
Ppu21I YACGTR 1 cut(s) 6168
PpuMI RGGWCCY 2 cut(s) 1019, 2774
PscI ACATGT 5 cut(s) 807, 2568, 4857, 5458, 9842
PshAI GACNNNNGTC 3 cut(s) 2025, 3780, 4658
PshBI ATTAAT 4 cut(s) 7443, 8775, 9117, 9243
PsiI TTATAA 3 cut(s) 4034, 4307, 5750
Psp124BI GAGCTC 1 cut(s) 9397
Psp5II RGGWCCY 2 cut(s) 1019, 2774
PspCI CACGTG 1 cut(s) 6168
PspEI GGTNACC 1 cut(s) 4989
PspFI CCCAGC 2 cut(s) 7704, 9286
PspPPI RGGWCCY 2 cut(s) 1019, 2774
PsrI GAACNNNNNNTAC 4 cut(s) 4814, 4846, 6744, 6776
PstI CTGCAG 4 cut(s) 1986, 3741, 5386, 7357
PstNI CAGNNNCTG 2 cut(s) 5390, 8518
PsuI RGATCY 7 cut(s) 298, 4848, 5020, 5188, 6130, 7996, 8803
PsyI GACNNNGTC 1 cut(s) 4077
PvuII CAGCTG 1 cut(s) 9677
RseI CAYNNNNRTG 7 cut(s) 987, 1541, 1692, 2742, 3296, 3447, 7047
SacI GAGCTC 1 cut(s) 9397
SalI GTCGAC 1 cut(s) 9479
SduI GDGCHC 8 cut(s) 49, 1105, 2860, 6598, 6827, 8431, 8745, 9397
SexAI ACCWGGT 1 cut(s) 8935
SfuI TTCGAA 1 cut(s) 5723
SinI GGWCC 7 cut(s) 273, 1019, 2774, 4019, 4462, 8215, 8822
SmiMI CAYNNNNRTG 7 cut(s) 987, 1541, 1692, 2742, 3296, 3447, 7047
SmlI CTYRAG 6 cut(s) 1343, 3098, 4194, 6071, 6665, 9398
SmoI CTYRAG 6 cut(s) 1343, 3098, 4194, 6071, 6665, 9398
SphI GCATGC 4 cut(s) 2006, 3761, 6632, 7463
SseBI AGGCCT 4 cut(s) 4457, 6327, 7769, 8792
SspI AATATT 6 cut(s) 1816, 1869, 3571, 3624, 7197, 7608
SstI GAGCTC 1 cut(s) 9397
StuI AGGCCT 4 cut(s) 4457, 6327, 7769, 8792
StyI CCWWGG 9 cut(s) 1298, 3053, 4458, 4521, 7368, 7741, 8486, 8783, 9317
TaiI ACGT 5 cut(s) 4836, 5835, 6170, 8414, 9064
TatI WGTACW 5 cut(s) 1550, 3305, 4791, 8143, 8810
TauI GCSGC 2 cut(s) 7694, 9538
TseFI GTSAC 9 cut(s) 2018, 3773, 4989, 5057, 5419, 5692, 7082, 9070, 9204
Tsp45I GTSAC 9 cut(s) 2018, 3773, 4989, 5057, 5419, 5692, 7082, 9070, 9204
TspGWI ACGGA 1 cut(s) 6353
Tth111I GACNNNGTC 1 cut(s) 4077
Van91I CCANNNNNTGG 5 cut(s) 1304, 1597, 3059, 3352, 4710
VneI GTGCAC 1 cut(s) 45
VpaK11BI GGWCC 7 cut(s) 273, 1019, 2774, 4019, 4462, 8215, 8822
VspI ATTAAT 4 cut(s) 7443, 8775, 9117, 9243
XagI CCTNNNNNAGG 1 cut(s) 7745
XbaI TCTAGA 2 cut(s) 4969, 8027
XcmI CCANNNNNNNNNTGG 2 cut(s) 1305, 3060
XmiI GTMKAC 6 cut(s) 1511, 1581, 3266, 3336, 8058, 9480
Zsp2I ATGCAT 3 cut(s) 3906, 5896, 9742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.