Rh4BG437900

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000223
Physical Location & Seq
Forward (+)
57897872 .. 57925999
28128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG437900.1

Sequence Viewer

Length: 927 bp
ATGATGGAGGTTTCAGGCAAGAAAAAGATCAAGCCTGACCCTTTCACTGATACTGTGTTTTCTTGGTCCCTGGAGGACATTCTCAATGAGGATCTTTACAAAGACAAGCAAGATAAGAACATTGATATAACAAAACCAGAAGCCAGAACAACAAAAAGCCATAACCCAAAATGGGATTGGAGGAATTCATTGAGACAGAATATGATTTCTCTTAGAAGAACTGATGCTTCAAAGAATGTGCTGAATCAAGTTATAGTTGAATATGCCAGCTTGAAGGACGAGCTGTCTTATGGGCAGATTGGAAGGATCGCAATGATCATTCTTGGGTCAGGTAAGCTGCTGAATACTGAGCTCTCTGTTCAGCTTGTGAAAAAGCTTGAAATCAATACACCGTGGAAGGCCTTCATTGAGAATCTCTGTGCAAGCATTGGACCTGAACATACCCATCAGGAACCAATAGAGGTGTCTGTCATGTGGTGGTTACATGAGGCTTTGGTTGAAACTTATAGCGCCAACTGGAGGGAGGTTTCCGACTACATAACACCTGGTTGCTTCTTGTATCTTGTGGAGCGCCTTCTGTTTTCAGCAAGTTGCTCTCAAGGTTTTGTCATCACTACAAGTTCTTGCTTTATTGAATGGCTGATATGCCAGGATGAAGATACCAGCTTACGCTCCATGGTGACTGGTGGAAGTCCTTCTCTGGAAGACATTCTTCCATTTGTGATTACTGTGGTTCGCGAGTGTATTTTTATCAAGAAGGATATGATTGAATGGATTGAGAAGTCTGACAGAAATTGGAGGCAGTATTATGAGCCACTCATGTTGCGATTGTGGCCTACCCAAATTGCTGATGCTTCTTGGTCTGCCGATGCAGCCCCAGCTATCCTTGAGGGTGGTGCTCCCGTAGTGGCCAGTGGTTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

308

Amino Acids

35.26

Weight (kDa)

5.0

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 918
AccII CGCG 1 cut(s) 738
AclWI GGATC 2 cut(s) 99, 314
AcoI YGGCCR 1 cut(s) 909
AcsI RAATTY 1 cut(s) 184
AfiI CCNNNNNNNGG 3 cut(s) 172, 519, 918
AgsI TTSAA 7 cut(s) 231, 260, 274, 380, 500, 635, 770
AhdI GACNNNNNGTC 1 cut(s) 283
AjnI CCWGG 3 cut(s) 69, 544, 648
AluBI AGCT 8 cut(s) 270, 283, 337, 352, 364, 376, 666, 881
AluI AGCT 8 cut(s) 270, 283, 337, 352, 364, 376, 666, 881
Alw21I GWGCWC 2 cut(s) 354, 901
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 2 cut(s) 99, 314
AoxI GGCC 3 cut(s) 399, 833, 909
ApeKI GCWGC 2 cut(s) 337, 872
ApoI RAATTY 1 cut(s) 184
Asp700I GAANNNNTTC 3 cut(s) 401, 694, 708
AspLEI GCGC 2 cut(s) 512, 573
AspS9I GGNCC 2 cut(s) 66, 431
AsuHPI GGTGA 1 cut(s) 691
AvaII GGWCC 2 cut(s) 66, 431
BalI TGGCCA 1 cut(s) 911
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 711
Bbv12I GWGCWC 2 cut(s) 354, 901
BbvI GCAGC 2 cut(s) 324, 884
BccI CCATC 1 cut(s) 453
BciT130I CCWGG 3 cut(s) 71, 546, 650
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 187
BfoI RGCGCY 2 cut(s) 513, 574
BisI GCNGC 2 cut(s) 338, 873
BlsI GCNGC 2 cut(s) 339, 874
Bme1390I CCNGG 3 cut(s) 71, 546, 650
Bme18I GGWCC 2 cut(s) 66, 431
BmeRI GACNNNNNGTC 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 66, 431
BmiI GGNNCC 2 cut(s) 68, 453
BmrFI CCNGG 3 cut(s) 71, 546, 650
BmsI GCATC 3 cut(s) 214, 841, 859
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 2 cut(s) 92, 538
BpuEI CTTGAG 2 cut(s) 582, 908
BsaJI CCNNGG 3 cut(s) 69, 392, 675
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 519, 918
Bse1I ACTGG 3 cut(s) 521, 688, 912
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 3 cut(s) 71, 546, 650
BseDI CCNNGG 3 cut(s) 69, 392, 675
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 3 cut(s) 172, 519, 918
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 3 cut(s) 521, 688, 912
BseXI GCAGC 2 cut(s) 324, 884
BseYI CCCAGC 1 cut(s) 877
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 3 cut(s) 401, 835, 911
BsiHKAI GWGCWC 2 cut(s) 354, 901
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 172, 519, 918
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 3 cut(s) 401, 835, 911
Bsp1286I GDGCHC 2 cut(s) 354, 901
Bsp143I GATC 4 cut(s) 27, 91, 306, 315
Bsp19I CCATGG 1 cut(s) 675
Bsp68I TCGCGA 1 cut(s) 738
BspANI GGCC 3 cut(s) 401, 835, 911
BspCNI CTCAG 1 cut(s) 340
BspFNI CGCG 1 cut(s) 738
BspLI GGNNCC 2 cut(s) 68, 453
BspPI GGATC 2 cut(s) 99, 314
BsrDI GCAATG 1 cut(s) 318
BsrI ACTGG 3 cut(s) 521, 688, 912
BssECI CCNNGG 3 cut(s) 69, 392, 675
BssMI GATC 4 cut(s) 27, 91, 306, 315
BssT1I CCWWGG 1 cut(s) 675
Bst2UI CCWGG 3 cut(s) 71, 546, 650
Bst4CI ACNGT 3 cut(s) 55, 393, 730
BstC8I GCNNGC 2 cut(s) 268, 424
BstDEI CTNAG 2 cut(s) 212, 348
BstDSI CCRYGG 2 cut(s) 392, 675
BstF5I GGATG 1 cut(s) 658
BstFNI CGCG 1 cut(s) 738
BstH2I RGCGCY 2 cut(s) 513, 574
BstHHI GCGC 2 cut(s) 512, 573
BstKTI GATC 4 cut(s) 30, 94, 309, 318
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 4 cut(s) 27, 91, 306, 315
BstMWI GCNNNNNNNGC 3 cut(s) 832, 872, 878
BstNI CCWGG 3 cut(s) 71, 546, 650
BstSCI CCNGG 3 cut(s) 69, 544, 648
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 2 cut(s) 324, 884
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 3 cut(s) 401, 835, 911
BtgI CCRYGG 2 cut(s) 392, 675
BtsCI GGATG 1 cut(s) 658
BtsIMutI CAGTG 2 cut(s) 45, 919
BtuMI TCGCGA 1 cut(s) 738
Cac8I GCNNGC 2 cut(s) 268, 424
CfoI GCGC 2 cut(s) 512, 573
Cfr13I GGNCC 2 cut(s) 66, 431
CsiI ACCWGGT 1 cut(s) 544
CspCI CAANNNNNGTGG 2 cut(s) 804, 839
CviAII CATG 4 cut(s) 472, 485, 676, 820
DdeI CTNAG 2 cut(s) 212, 348
DpnI GATC 4 cut(s) 29, 93, 308, 317
DpnII GATC 4 cut(s) 27, 91, 306, 315
DriI GACNNNNNGTC 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 909
Eam1105I GACNNNNNGTC 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 675
Eco147I AGGCCT 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 66, 431
Eco53kI GAGCTC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 69, 544, 648
EcoT14I CCWWGG 1 cut(s) 675
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 4 cut(s) 475, 488, 679, 823
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 52
FatI CATG 4 cut(s) 471, 484, 675, 819
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 338, 873
FokI GGATG 1 cut(s) 665
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 2 cut(s) 338, 873
GlaI GCGC 2 cut(s) 511, 572
GluI GCNGC 2 cut(s) 338, 873
GsaI CCCAGC 1 cut(s) 881
GsuI CTGGAG 2 cut(s) 92, 538
HaeII RGCGCY 2 cut(s) 513, 574
HaeIII GGCC 3 cut(s) 401, 835, 911
HhaI GCGC 2 cut(s) 512, 573
Hin1II CATG 4 cut(s) 475, 488, 679, 823
Hin6I GCGC 2 cut(s) 510, 571
HinP1I GCGC 2 cut(s) 510, 571
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 2 cut(s) 244, 412
HphI GGTGA 1 cut(s) 691
Hpy188I TCNGA 2 cut(s) 532, 787
Hpy188III TCNNGA 4 cut(s) 449, 701, 737, 754
HpyAV CCTTC 7 cut(s) 268, 297, 391, 412, 584, 705, 751
HpyCH4III ACNGT 3 cut(s) 55, 393, 730
HpyCH4V TGCA 2 cut(s) 422, 872
HpyF10VI GCNNNNNNNGC 3 cut(s) 832, 872, 878
HpyF3I CTNAG 2 cut(s) 212, 348
Hsp92II CATG 4 cut(s) 475, 488, 679, 823
HspAI GCGC 2 cut(s) 510, 571
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 4 cut(s) 27, 91, 306, 315
LmnI GCTCC 3 cut(s) 568, 677, 904
Lsp1109I GCAGC 2 cut(s) 324, 884
LweI GCATC 3 cut(s) 214, 841, 859
MabI ACCWGGT 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 480, 679
MalI GATC 4 cut(s) 29, 93, 308, 317
MboI GATC 4 cut(s) 27, 91, 306, 315
MboII GAAGA 4 cut(s) 228, 668, 704, 716
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 354, 901
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 3 cut(s) 184, 793, 843
MluNI TGGCCA 1 cut(s) 911
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 9 cut(s) 67, 82, 174, 454, 481, 513, 517, 792, 883
Mox20I TGGCCA 1 cut(s) 911
MroXI GAANNNNTTC 3 cut(s) 401, 694, 708
MscI TGGCCA 1 cut(s) 911
Msp20I TGGCCA 1 cut(s) 911
MspR9I CCNGG 3 cut(s) 71, 546, 650
MvaI CCWGG 3 cut(s) 71, 546, 650
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 3 cut(s) 832, 872, 878
NcoI CCATGG 1 cut(s) 675
NdeII GATC 4 cut(s) 27, 91, 306, 315
NlaIII CATG 4 cut(s) 475, 488, 679, 823
NlaIV GGNNCC 2 cut(s) 68, 453
NmuCI GTSAC 1 cut(s) 679
NruI TCGCGA 1 cut(s) 738
PceI AGGCCT 1 cut(s) 401
PdmI GAANNNNTTC 3 cut(s) 401, 694, 708
PfeI GAWTC 2 cut(s) 244, 412
PflMI CCANNNNNTGG 1 cut(s) 918
PkrI GCNGC 2 cut(s) 339, 874
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 3 cut(s) 69, 544, 648
PspFI CCCAGC 1 cut(s) 877
PspGI CCWGG 3 cut(s) 69, 544, 648
PspN4I GGNNCC 2 cut(s) 68, 453
PspPI GGNCC 2 cut(s) 66, 431
PsuI RGATCY 1 cut(s) 91
RruI TCGCGA 1 cut(s) 738
SacI GAGCTC 1 cut(s) 354
SatI GCNGC 2 cut(s) 338, 873
Sau3AI GATC 4 cut(s) 27, 91, 306, 315
Sau96I GGNCC 2 cut(s) 66, 431
ScrFI CCNGG 3 cut(s) 71, 546, 650
SduI GDGCHC 2 cut(s) 354, 901
SexAI ACCWGGT 1 cut(s) 544
SfaNI GCATC 3 cut(s) 214, 841, 859
SinI GGWCC 2 cut(s) 66, 431
SmlI CTYRAG 2 cut(s) 597, 887
SmoI CTYRAG 2 cut(s) 597, 887
Sse9I AATT 3 cut(s) 184, 793, 843
SseBI AGGCCT 1 cut(s) 401
SstI GAGCTC 1 cut(s) 354
StuI AGGCCT 1 cut(s) 401
StyD4I CCNGG 3 cut(s) 69, 544, 648
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 3 cut(s) 55, 393, 730
TasI AATT 3 cut(s) 184, 793, 843
TfiI GAWTC 2 cut(s) 244, 412
TscAI CASTG 2 cut(s) 52, 919
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 2 cut(s) 337, 872
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 3 cut(s) 177, 394, 669
TspRI CASTG 2 cut(s) 52, 919
Van91I CCANNNNNTGG 1 cut(s) 918
VpaK11BI GGWCC 2 cut(s) 66, 431
XapI RAATTY 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
XmnI GAANNNNTTC 3 cut(s) 401, 694, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.