FvH4_1g26391

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000223
Physical Location & Seq
Forward (+)
18261945 .. 18263470
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26391.t1

Sequence Viewer

Length: 1257 bp
ATGCTGAATGGGTTAGAGATGTGGACAGCAGTTATTTCCGAAGTCATAGTAGAGCTGCTTTCTGTAGGCATTAAGGTTTGGAAAAGCTTGAGGCACTTTTCAAGTTCTGTGTCAAGAGTTGATTCAACATTCTTCCAGAGCAAGGCTCTTACCTTCATATATGATGTTGGGGTATATCTCTTGAATTCCAAATGCTTGAAGCGTAGGTCTCAAGATACCAAGACACTGCAGAAATTTGTAACTTTCTCCACTGAAAGGATCGCAATGACCATTCTTGGGTCTGGTAAACTGAATTTTGAACTATCTAAGAATCTTGTGAAGAAGTTGGAGGCCAATCCACCATGGAAGGACTTGATGGAGAGCCTTTGTGCAAGTACTGAACCTGAAAATACCAGTGAGAAACCTAGAGAGGTGTCGGTTATGTGGCTGTTATCTGAGGCTTTAGTTGAAACTTACAATGCAAACTGGAGGGTTGTTAGAGACTACGAAGAAGATACTCATCTGCAACCATCAATAAAGAAGATCCTTCATTTCGTCAGTGGTGTGGTTTCCAAATGTCTTTGCAACAGGGAAAATCTGATTGAATGGATTAAAAAGTCTGATGTAGATTGGAAGACCTGTTATTCACTACTAGTGCCGAGATTGGTCTTTTTATTATGCTTGCTCTGTGTGAACTTTGGGGTATGCTTGGACTTGCTCTCTGATGTGCTGGGAAGGAGCCATATCACAGAACAGCTTCCATGGGAATTTTACGACACCCTTAAGAGGTGGATGAAGAACAATTTTGTCAAGATAATAAATGTAAATGTGCTTGCAATAGCTTTCAAGAAGATTAATAATGCTTTGGTGATTGTGAGTTTTGGGCGTGATTGTTCAAGAGTCTTGTGCCCAGATACCATCTTTGTTGACATGAAGGCCACTCAGTGCAAGGATGACCTATTCAGAAAAATGTTTCTGAAAGCACCTGTCATTCAAGCTGCACAAGGTCAAATTGGTTCTATGGAAGCTGAAGCTAATACTCTTTGTGGTGGTGTACTCTCTGCAAGCGATATCCGAGCAGGGAAGACCTCTTTAAACTCCAGCTTGGTGGCAGAAACTGATATTGCAACTGATGAGCAGTTTGACACTGATGAGTCTACACTTAAGTCTGCACAACCTGATGCAGTCTCCACTTCTGCTTCTGCAACCCAGGGAAACAAAAAGGGCACCCGCAAGAATAATCCCAAGAAACATAAGGGACGAAAAGGCAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

419

Amino Acids

47.03

Weight (kDa)

9.0

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1205
AccI GTMKAC 1 cut(s) 1136
AciI CCGC 1 cut(s) 1210
AclWI GGATC 2 cut(s) 266, 517
AcsI RAATTY 4 cut(s) 184, 233, 292, 746
AcuI CTGAAG 1 cut(s) 1029
AdeI CACNNNGTG 1 cut(s) 924
AfaI GTAC 2 cut(s) 376, 1035
AfiI CCNNNNNNNGG 4 cut(s) 142, 255, 276, 765
AflII CTTAAG 2 cut(s) 761, 1142
AhlI ACTAGT 1 cut(s) 631
AjnI CCWGG 1 cut(s) 1188
AluBI AGCT 8 cut(s) 55, 87, 736, 821, 977, 1007, 1013, 1083
AluI AGCT 8 cut(s) 55, 87, 736, 821, 977, 1007, 1013, 1083
Alw26I GTCTC 3 cut(s) 213, 474, 1171
AlwI GGATC 2 cut(s) 266, 517
AlwNI CAGNNNCTG 1 cut(s) 1097
AoxI GGCC 2 cut(s) 330, 915
ApeKI GCWGC 2 cut(s) 55, 977
ApoI RAATTY 4 cut(s) 184, 233, 292, 746
AseI ATTAAT 1 cut(s) 834
Asp700I GAANNNNTTC 1 cut(s) 735
AsuHPI GGTGA 1 cut(s) 859
BaeGI GKGCMC 2 cut(s) 890, 1208
BanI GGYRCC 1 cut(s) 1205
BbsI GAAGAC 2 cut(s) 620, 1070
BbvI GCAGC 2 cut(s) 42, 964
BccI CCATC 3 cut(s) 349, 517, 905
BciT130I CCWGG 1 cut(s) 1190
BcoDI GTCTC 3 cut(s) 213, 474, 1171
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 2 cut(s) 405, 632
BfmI CTRYAG 2 cut(s) 63, 227
BfrI CTTAAG 2 cut(s) 761, 1142
BisI GCNGC 2 cut(s) 56, 978
BlsI GCNGC 2 cut(s) 57, 979
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 1190
BmiI GGNNCC 2 cut(s) 719, 1207
BmrFI CCNGG 1 cut(s) 1190
BmsI GCATC 1 cut(s) 1150
BpiI GAAGAC 2 cut(s) 620, 1070
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpmI CTGGAG 2 cut(s) 487, 1063
BpuEI CTTGAG 2 cut(s) 109, 195
BsaBI GATNNNNATC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 4 cut(s) 341, 740, 1188, 1189
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 255, 276, 765
Bse1I ACTGG 2 cut(s) 393, 470
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 1190
BseDI CCNNGG 4 cut(s) 341, 740, 1188, 1189
BseGI GGATG 2 cut(s) 777, 937
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 4 cut(s) 142, 255, 276, 765
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 426, 935
BseNI ACTGG 2 cut(s) 393, 470
BseSI GKGCMC 2 cut(s) 890, 1208
BseXI GCAGC 2 cut(s) 42, 964
BseYI CCCAGC 1 cut(s) 709
BsgI GTGCAG 2 cut(s) 963, 1134
BshFI GGCC 2 cut(s) 332, 917
BshNI GGYRCC 1 cut(s) 1205
BslFI GGGAC 1 cut(s) 1251
BslI CCNNNNNNNGG 4 cut(s) 142, 255, 276, 765
BsmAI GTCTC 3 cut(s) 213, 474, 1171
BsmFI GGGAC 1 cut(s) 1251
BsnI GGCC 2 cut(s) 332, 917
Bso31I GGTCTC 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 890, 1208
Bsp143I GATC 2 cut(s) 258, 522
Bsp19I CCATGG 2 cut(s) 341, 740
BspACI CCGC 1 cut(s) 1210
BspANI GGCC 2 cut(s) 332, 917
BspCNI CTCAG 2 cut(s) 427, 934
BspLI GGNNCC 2 cut(s) 719, 1207
BspMAI CTGCAG 1 cut(s) 231
BspPI GGATC 2 cut(s) 266, 517
BspT107I GGYRCC 1 cut(s) 1205
BspTI CTTAAG 2 cut(s) 761, 1142
BspTNI GGTCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 2 cut(s) 393, 470
BssECI CCNNGG 4 cut(s) 341, 740, 1188, 1189
BssMI GATC 2 cut(s) 258, 522
BssT1I CCWWGG 2 cut(s) 341, 740
Bst2UI CCWGG 1 cut(s) 1190
BstAFI CTTAAG 2 cut(s) 761, 1142
BstC8I GCNNGC 3 cut(s) 662, 813, 1045
BstDEI CTNAG 3 cut(s) 306, 435, 921
BstDSI CCRYGG 2 cut(s) 341, 740
BstF5I GGATG 2 cut(s) 777, 937
BstKTI GATC 2 cut(s) 261, 525
BstMAI GTCTC 3 cut(s) 213, 474, 1171
BstMBI GATC 2 cut(s) 258, 522
BstNI CCWGG 1 cut(s) 1190
BstSCI CCNGG 1 cut(s) 1188
BstSFI CTRYAG 2 cut(s) 63, 227
BstSLI GKGCMC 2 cut(s) 890, 1208
BstV1I GCAGC 2 cut(s) 42, 964
BstV2I GAAGAC 2 cut(s) 620, 1070
BstX2I RGATCY 1 cut(s) 522
BstXI CCANNNNNNTGG 1 cut(s) 1087
BstYI RGATCY 1 cut(s) 522
BsuRI GGCC 2 cut(s) 332, 917
BtgI CCRYGG 2 cut(s) 341, 740
BtsCI GGATG 2 cut(s) 777, 937
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 6 cut(s) 224, 249, 400, 544, 929, 1125
Cac8I GCNNGC 3 cut(s) 662, 813, 1045
CaiI CAGNNNCTG 1 cut(s) 1097
Csp6I GTAC 2 cut(s) 375, 1034
CviAII CATG 3 cut(s) 342, 741, 910
CviQI GTAC 2 cut(s) 375, 1034
DdeI CTNAG 3 cut(s) 306, 435, 921
DpnI GATC 2 cut(s) 260, 524
DpnII GATC 2 cut(s) 258, 522
DraI TTTAAA 1 cut(s) 1074
DraIII CACNNNGTG 1 cut(s) 924
Eco130I CCWWGG 2 cut(s) 341, 740
Eco31I GGTCTC 1 cut(s) 213
Eco32I GATATC 1 cut(s) 1051
Eco57I CTGAAG 1 cut(s) 1029
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 1188
EcoRV GATATC 1 cut(s) 1051
EcoT14I CCWWGG 2 cut(s) 341, 740
ErhI CCWWGG 2 cut(s) 341, 740
FaeI CATG 3 cut(s) 345, 744, 913
FaqI GGGAC 1 cut(s) 1251
FatI CATG 3 cut(s) 341, 740, 909
FauI CCCGC 1 cut(s) 1217
FblI GTMKAC 1 cut(s) 1136
Fnu4HI GCNGC 2 cut(s) 56, 978
FokI GGATG 2 cut(s) 784, 944
Fsp4HI GCNGC 2 cut(s) 56, 978
FspBI CTAG 2 cut(s) 405, 632
GluI GCNGC 2 cut(s) 56, 978
GsaI CCCAGC 1 cut(s) 713
GsuI CTGGAG 2 cut(s) 487, 1063
HaeIII GGCC 2 cut(s) 332, 917
Hin1II CATG 3 cut(s) 345, 744, 913
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 4 cut(s) 122, 310, 879, 1133
HphI GGTGA 1 cut(s) 859
Hpy166II GTNNAC 6 cut(s) 24, 287, 673, 907, 1034, 1137
Hpy188I TCNGA 8 cut(s) 40, 436, 579, 601, 703, 944, 957, 1055
Hpy188III TCNNGA 7 cut(s) 114, 136, 181, 212, 790, 826, 876
Hpy8I GTNNAC 6 cut(s) 24, 287, 673, 907, 1034, 1137
HpyAV CCTTC 5 cut(s) 163, 340, 536, 708, 907
HpyF3I CTNAG 3 cut(s) 306, 435, 921
Hsp92II CATG 3 cut(s) 345, 744, 913
Kzo9I GATC 2 cut(s) 258, 522
LmnI GCTCC 1 cut(s) 717
Lsp1109I GCAGC 2 cut(s) 42, 964
LweI GCATC 1 cut(s) 1150
MaeI CTAG 2 cut(s) 405, 632
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 260, 524
MboI GATC 2 cut(s) 258, 522
MboII GAAGA 9 cut(s) 124, 331, 500, 503, 532, 625, 787, 841, 1075
MflI RGATCY 1 cut(s) 522
MhlI GDGCHC 2 cut(s) 890, 1208
MluCI AATT 6 cut(s) 184, 233, 292, 746, 781, 990
MlyI GAGTC 2 cut(s) 888, 1142
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 7 cut(s) 84, 322, 403, 430, 462, 759, 1078
MroXI GAANNNNTTC 1 cut(s) 735
MseI TTAA 6 cut(s) 72, 591, 762, 834, 1073, 1143
MspCI CTTAAG 2 cut(s) 761, 1142
MspR9I CCNGG 1 cut(s) 1190
MvaI CCWGG 1 cut(s) 1190
NcoI CCATGG 2 cut(s) 341, 740
NdeII GATC 2 cut(s) 258, 522
NlaIII CATG 3 cut(s) 345, 744, 913
NlaIV GGNNCC 2 cut(s) 719, 1207
NmeAIII GCCGAG 1 cut(s) 663
PasI CCCWGGG 1 cut(s) 1189
PdmI GAANNNNTTC 1 cut(s) 735
PfeI GAWTC 2 cut(s) 122, 310
PkrI GCNGC 2 cut(s) 57, 979
PleI GAGTC 2 cut(s) 887, 1141
PpsI GAGTC 2 cut(s) 887, 1141
PshBI ATTAAT 1 cut(s) 834
Psp6I CCWGG 1 cut(s) 1188
PspFI CCCAGC 1 cut(s) 709
PspGI CCWGG 1 cut(s) 1188
PspN4I GGNNCC 2 cut(s) 719, 1207
PstI CTGCAG 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 1097
PsuI RGATCY 1 cut(s) 522
RsaI GTAC 2 cut(s) 376, 1035
RsaNI GTAC 2 cut(s) 375, 1034
SaqAI TTAA 6 cut(s) 72, 591, 762, 834, 1073, 1143
SatI GCNGC 2 cut(s) 56, 978
Sau3AI GATC 2 cut(s) 258, 522
ScaI AGTACT 1 cut(s) 376
SchI GAGTC 2 cut(s) 888, 1142
ScrFI CCNGG 1 cut(s) 1190
SduI GDGCHC 2 cut(s) 890, 1208
SfaNI GCATC 1 cut(s) 1150
SfcI CTRYAG 2 cut(s) 63, 227
SmlI CTYRAG 4 cut(s) 88, 210, 761, 1142
SmoI CTYRAG 4 cut(s) 88, 210, 761, 1142
SpeI ACTAGT 1 cut(s) 631
Sse9I AATT 6 cut(s) 184, 233, 292, 746, 781, 990
SsiI CCGC 1 cut(s) 1210
SspMI CTAG 2 cut(s) 405, 632
StyD4I CCNGG 1 cut(s) 1188
StyI CCWWGG 2 cut(s) 341, 740
TasI AATT 6 cut(s) 184, 233, 292, 746, 781, 990
TatI WGTACW 2 cut(s) 374, 1033
TfiI GAWTC 2 cut(s) 122, 310
Tru1I TTAA 6 cut(s) 72, 591, 762, 834, 1073, 1143
Tru9I TTAA 6 cut(s) 72, 591, 762, 834, 1073, 1143
TscAI CASTG 6 cut(s) 231, 256, 400, 544, 929, 1132
TseI GCWGC 2 cut(s) 55, 977
TspDTI ATGAA 4 cut(s) 145, 518, 788, 926
TspRI CASTG 6 cut(s) 231, 256, 400, 544, 929, 1132
Vha464I CTTAAG 2 cut(s) 761, 1142
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 4 cut(s) 184, 233, 292, 746
XmiI GTMKAC 1 cut(s) 1136
XmnI GAANNNNTTC 1 cut(s) 735
XspI CTAG 2 cut(s) 405, 632
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.