FvH4_4g36250

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000223
Physical Location & Seq
Forward (+)
33264179 .. 33276212
12034 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36250.t3

Sequence Viewer

Length: 8184 bp
ATGCTTGAATCTAACTGGGGTTCGTGGTGGTGGAGGAACTGGATCGGAAAAAAGAGGGATTCTCGTTGTAAGCTATCTAATGCAACCGTCGCTGGAATTGAGAAGAAGGTCAAGCCTGAACCTTTCACTGATACTGTGTTTTCTTGGTCCCTGGAGGACATTAGCAATGAGGATCTTTACAAAGACAAGGTGAAGGAGATTCCTAATTCATTTCAATCGGCTCAGCATTACTTTGGGTCTTATATATATCCTTTACTGGAAGAAACCCGAGCAGAAGTGCATTCAAGTATGGAAACTCTTAATAGAGCACCGTTTGCTGAAGTAGTGGGTTTTGAAGAATTGAAGCCATATGGAACAAAGCTATATGATGTCAAGGTTGATTACTGGCGAAACAGGTTCAGTGATAGAGGCAAGGAGCCCTATAAAACTTTGCCTGGTGATCTTTTTGTTTTAGCAGATGCTAAACCTGAAACTGTTTCTGATTTACAACGGGTGGGAAGGTCATGGGCTTTTGCATCGGCCACTAGTGTTTCAGAAAGTGAGAATGAAGATGACAGTACCACTCTTTATTTTAAAGTCAAGGCATCAAAAGAGTTTGAAGTCGAAAATAGCAGGACATCACTTTTTATAGTTTTCTTGGTTAATTTGATCCCTGAAGCAAGAGTTTGGAAAGCATTGCACATGTCCAGAAATCTTAAGATTATCAACGAAGTTCTGTGCACTGATTCAATGGTTCAGACAGATTTCTGCTCTGAAAAGAATACTAACATCTGGAATCAGAGTATAGCTGAGAGTCTATTATCTGGATTAAATGAGTCCCAAACTGGGGCAGTGTTGGCCTGCCTTGAAATGCTGCGTTCTGGTGAGAAGTCTGCCGTTGAACTTATCTGGGGACCTCCTGGTACTGGCAAAACAAAAACCACGGTTACTCTGCTTTCAACCCTGCTGCAGATGAAATATAGGACTCTTATCTGTGCTCCAACAAATGTTGCAATAACTGAAGTTGCTTCTCGTCTTGTGAAGATGGTGCATGAAGCAGAGTCAAAAGAATTGTTTTGTTCTCTAGGAGAGATTCTTCTATTTGGGAATAAGGAGCGACTCAAAATTGGTTCAGACATTGAAGAAATTTATATGGATTGCCGTATCAAAAGGCTTGTAGATTGTTTAGGGCCAACGACTGGTTGGAGGCATTGCTTTGCTTCCATGATAGGTTTACTTGAGGATTGTGTTTCTGACTACCAAATTTTCTTGGAAAATGAATTCACCAAAGAGACAGAACAAACAACTGTTAGTGAAATGAAAGATAATGAATGCAGAAGAGTTGCTCAAGTTAAAAAGTTGAAGTGCAAAACCTTTGTCGAATTTTTGAGAGATAGATTTGTCTCTACTGCAGTGCCGTTAAGATATTGCATTTCTGTGTTCTGTACTCATATAGGGAAAAGTTATATTTCGGAAGATAATTTCCAAGACTTGGTTTCGCTTATCCAGAAAGTTGATTCCTTTATGTCAATGTTGTTGTCTCAAGACAATGTTGTTTCTGAAGCCTTGGAAGAACTCTTTTCCCATTCAGATGTTGAAGATGTGTCTAATTCGTTAGTAGACAACTTCTTTGATCTTTGGATGATTAGAAAGGATTGCCTTATAGCTTTACGCACTTTACGGGATTCTCTTAGTGAGCTTAAACTTCCAAATATTAGGAGCGATGATTCTATACAGGAGTTCTGTTTTCAAAGAGCAACTCTAATATTTTGCACTGCATCTAGTTCATATAAGCTGCACAGAGTGGCAATGCAGCCACTAAGCATTGTTGTTATTGACGAGGCTGCACAGCTAAAAGAGTGTGAGTCAACAATACCCCTGCAACTTCCAGGTGTGAAGCATGCTGTTCTTGTTGGTGATGAATGTCAGTTACCAGCTACTGTAACAAGCAATGTTTCTGATGTAGCTGGTTTTGCAAGAAGCTTGTTTGAGAGGTTAAGTTTAATGGGTCATTCAAAACATCTATTGAATGTGCAATACAGAATGCATCCATCAATAAGTTTATTCCCAAATTCAAGTTTCTATTATAACTTGATCCTGGATGCTCCAAATGTAAAACGAAGAAGCCACGAGAAACACTATCTTCCAGGAGCAATGTTTGGTCCGTATTCTTTTATAAATGTGATTGGTGGAAGAGAGGAGAAAGATGAGGATGGACGAAGTCGGAAGAATATGGTGGAGGTTGCTGTTGTTTCAAAAATACTGCGAAATCTGTACAAAGGATGGGTTGAATCAAAACAGAGACTTAGTATTGGTATAGTATCTCCCTATGCTGCTCAAGTGGTGGCAATTAAGGACAGAGTGGGTGAGAAATATGATAAGCTTGATGGCTTTGTAGTGAAGGTAAAAACAGTTGATGGATTTCAAGGTGGGGAAGAGGACATAGTTATAATTTCCACTGTACGATCCAACAGCCATCAATCACTTCAGTTCATTTCAAAACCGCAAAGAGTTAATGTCTCACTTACAAGGGCTAGGCACTGTTTGTGGATTTTGGGGAATGAAAGGACTCTCTCTGATAGCGAATCTGTTTGGAGTGCTTTGGTCCTTGATGCCAAAAATCGTCATTGCTTCTTTCATGCCGATGAAGACAAGGATTTAGCCAAGGCCATATTAGAGGTAAAGAAAGAGTTTGACCAATTTGATGATTTGCTGAATGCCGACAGCATACTTTTTAGAAGTGCTAGATGGAAGGTACTTTTCAGTGATAACTTTCTGAAGTCATTCAAGAAACTGACATCAGTCCGCTTGCAGAAGTCAGTGCTACATCTTCTACTGAATCTTTCCAGTGGTTGGAGACCTAAGAAGCAAAATTTTGAGACAAGTTGTGGTAGCTCATCTATGATGTTGAAGAAATTTAAGGTTGAACACTTATACATTGTTTGCACTAATGATATTGCAAAGAACTTGAACTGTGTTCAAGTATTAAAGATTTGGGACATACTGCCTCTGGAGGATATTCCAAAGTTGATAAACCGCCTGGATAGTATTTTCAACAGATATACTGATGACTTTATTAATCTTTGCAAGGAGAAGTGTCTTGATGGTGATCTAGAAGTTCCAAAAACCTGGCCACCCTCGTTGCAATTTTCCCGGTTTAAGGATCTTAACATCAGTGAAGCTCAGAGTGATTTAGTTGGTGACACTTCTGATTGTAGAAGCTATGTTGAGAACTCACAGGTTAGCGAGAGTTTGTTACTGATGAAATTTTATTCCTTGTCGTCTGGGGTAGTGAACCACTTGTTGTCAGACCGTGAGGGTAGAGAGTTGGATCTTCCATTTGAAGTTACAGATGAAGAGATGGAGATTATCCTTTACCGTAGAAGTTCTTTTATAGTGGGACGGTCAGGAACTGGGAAAACCACAGTATTAACAATGAAATTGTTTCAAAAAGAACAGTGGCACCAATTTGCAGTTCAAGGATGCTATAATAGTCAAAATACTAGCCAGGTTGAGGAGAGTTCTGCAGCTACTGAAGGGAAAGTTCTGCGCCAGCTTTTTGTGACAGTGAGTCCAAAGCTATGCTTTGCCATCAAGCGACATGTTTCACACTTGAAAAGTTTTGTATGTGGTGGAGGTAACTCAACTGACTCAAGTGAGGGAGGTTTGATTGATATGGTTGATTTTGATGAGGAGGAAACCCAATTCAAGGATATCCAAAGTTCATTTCACAATATTCCTCCAAGCTCTTATCCTCTCGTCATTACATTCCATAAGTTTTTGATGATGCTTGATGGAACTTTGAGTAACTCGTACTTTGAAAGATTCCTTGAAGTGACAGCTACTGTTGGCCAGTTTAGGAGTTCGTCATCAGTTGCATTTCAGAACTTCATAAGGACGAAAGAAGTCAATTATGAGAGGTTTAGCTCTTTGTATTGGCCCCATTTTAATGCTCAGGTAACGAAGAAGCTTGACGTTTCAAGAGTCTTTATAGAGATTATTTCTTATATAAAAGGTGGCTTAGGAGCTATAGATGCATGTGATGGTAAACTCAGCCGGCAGGATTACGTTCATCTGTGTGAGGGCCGGGGTTCTAACTTGAGCAAGCAAAAGAGAGAAGCAATATACGATATTTTTCAGGCTTATGAAAAGTTGAAGATGGAAAAGGGTGAGTTTGATCTGGCTGATTTTGTAATAGATCTTCACCGTCGACTCAAGCAAGAAAAATATGAGGGTGATCAGATGGAATTTGTTTATATTGATGAGGTTCAAGATCTCACAATGAGTCAAATTGCTTTGTTTAAACATCTGTGCAACAATGTAGAAGAGGGATTTGTTTTTTCTGGTGATACAGCACAAACGATAGCAAGGGGTATTGACTTTCGGTTTCAGGATATACGACATCTGTTCTACAAGAAGTTTGTACTAGAGTCAAGAAGCAACAGTAATGATGAAAGAAAAGAAAAAGGCCTCATCTCTGAATTACTTCAGTTGACTCAGAACTTCCGTACTCATGCCGGTATATTGAAGTTATCACAAAGCATTGTTGAACTACTGTATCGGTTTTTCCCATTTTCTGTAGATGTTCTGAAACCTGAAACCAGTCTGATTTATGGGGAAGCTCCAGTTTTTCTTGAATCTGGAGAAAACGAAAATGCAATCATGAAAATTTTTGGAAACAGTGGAAATATAGTTGGTTTTGGTGCAGAGCAGGTGATTTTGGTGCGAGATGATAGTGCCCGACAAGAAATATCCAAATTTGTAGGGAAGCATGCTCTTGTACTAACCATAGTGGAGTGTAAGGGCCTTGAGTTTCAGGATGTCCTCCTATACAACTTTTTCGGTTCATCACCTTTGAAAAATCAGTGGAGGGTTATCTATGATTACATGAAGGAACAAGATTTACTCGACTCCACATTACCTAAGGGCTTTCCAAGTTTCAGTGAATCAAAACATAACATACTGTGCTCTGAACTTAAGCAATTATATGTTGCTGTTACTCGAACAAGACAGAGGTTGTGGATTTGTGAAAATGTGGAAGACCTCTCGAAACCTATGTTTGACTATTGGAAGAAAAAATGTCTTGTGCAACAAAGGCAGCTAGATGATTCACTTGCCCAGGCTATGCAAGTGGCAAGCAGTCCAGAGGAGTGGAAATCAAGAGGCATTAAGCTATATCATGAACATAACTATGAAATGGCCACAATGTGCTTTGAAAGAGCTGGTGATATGTACTGGGAAAGGAGGTCGAAAGCATCCGGCCTTAAAGCTATAGCTGACCGTATGCGAACATCAAATCCCGAAGAGGCTAAGTCTATTCTTAGAGAAGCTGCTGAAATATTTGACGCTATAGGAAAGGCGGATTCTGCTGCCAGATGTTTTTCTGATTTGGGGGAATATGAAAGAGCAGCTAGGATATATTTCGAAAAATGTGGAGAATCTGAACTTCAGAGAGCTGCAGAGTGCTTTTCACTAGCGGGATGTTATGATCGTGCTGCAGAAGTCTATGCCAAGGGCAATTTTTTCTCAGAGTGTCTCACTGTTTGTGCGAATGGGAAACTTTTTGAAATGGGTTTGGATTATATTAATTATTGGAAACAGCATGCTGTTGAGGACTGTGCTAAGGCTAGTAGAGGAGAAGCAATAGATAAAATGGAGCAGGAATTCTTAGAGAGCTGCGCACTTCATTATCACAAATTGAAAGATAACAGATCCATGATGAAATTTGTGAAAGCTTTCAATTCTGTAATAATGATGCGGGACTTTTTGAAAAGTTTAGGGAGCCTTGATGAGCTTTTGTCATTGGAGGAAGAATTTGGAAATTATCTGGAAGCAGCAAACATTGCCCAGCTTAAGGGTGACATTCTTCTTGAATCTGATTTCCTTGGAAAGGCAGGCAAGTTCAAAGAGGCCTCACTGCATATTCTGTTATATGTATTTTCCAAGTCTCTTTGGTCATCTGGTAGCAAAGGCTGGCCCATGAAGAAGTTTCCAAGACAGGAGGAGCTGTTGATGAAGGCCAAGTCATTTGCCAAGAATGGGGAAGATAATGTTTATAAGCTGGTTTGCGCCGAGTCGGAGATTTTACTGAATGGGCAGGATAATTTGGCTGGTTTGAATCATCACATGGATGCTTCTCAAAGAGATAGGAGTATTATAGGTGAAGTGTTGTCAGCTCGAAAAATTTTGGATGCACATCTCTCTTCAAGAACTGACAAGTATTTTTGGGAGAAAGAATTGACTGGAGATGTTGTGAAGCATTCAAAAGACTGTATATCTAGAAATCAGGTATCCATTGATTCGCTTGCCTATTACTGGATTTTATGGAAGGAGAACATTATTCACATTATTGAATCTGTAGGATGTTTGGAAACTCCAGAATTCAATAGCTATGCAGAGCTCTGTTTTACTTGTTTAGGAGTTTGGCGGTTGTGTCAGAATCTGAATCCAATCTATGTTTTACTGGTCCCTGATGCTGATTGGGTCAGAGGTCTGGACAAAAGGCATTTGAAAACTTATAATAAGTTGGTTTCCATTGATGCTCACCAGCTCATTCCAGCCGCTCAGAATTATTGGAGTTCAGAACTGCTCTCTGTTGGCATCAACGTTTTGGAAAAGGTTGAAGCACTTTTCAAGTTCCCACCAAAGAACTCTGACTCAACATTCTTCCAGTGCAGGGCTCTTACCCTTATTTATGATGTTGCAAGGAATCTTTTGGATTCCAAGTGTCTGAAGCCAAGGTATCAAGATATGTTGACACTGCAGAAGCATGTAACATTTTCAACTGGGGAGTATGTTGCTTACATCTTTCCTTTAGATGGGAGGAATTTGTTGAGACAAAACATGATTTCTCTTAGAAGAACTGATGCTTCCAAGAACATGCTGAATCAAGTTATAGTTGAATATGCCAGCTCGAAGAATGAGCTGTCTTATGGCCAGATTGGAAGGATCGCAATGATCATTCTCGGGTTAGGTAAGCTGAATGCTGAGCTCTCTGATAAGCTTGTGAAAAAACTTGAATGCCATGCCCCATGGAAGGCCTTCATTGAGAATCTCTGTGTGAGCACTGAACCTGGAAATACCAGTCTGCAACCAATAAAGTTGTCTGTCATGCGTTGGTTACATGAGGCTTTGGTTGAAACTTACAGTGTCAACTGGAGGAAGGTTTCCGACTACATATCACCTGGTTGCTTCTTGTATCTTGTAGAGCGCCTTCTGCTCTCAGCAAGCTGCTTTCAAGGTTTTGTTATCACTACAAGTTCTTGCTTTATCGAATGGCTGATATGTCAGGATGATACCAGCTTACGTTGCATAGTGACTGGTGGACGTCCTTCCCTGGGAGGCACTCTTCCATTTGTGATTGATGTGGTTCGCGATTGTATTTACAACATGAAGAATATGATTGAATGGATTGAGAAGTCTGACAAAAATTGGAGGAAGTATTATCCGCCACTCATGTTGCGATTGATTACTGTCTTATGTTTGATTAATTTGAACTTTGGCTCGTGTTTGGATATAATCCATGATTTGCTGGGGAGGAACTATATCACTGAACTCCTACCATGGGAATTTTTTGATGCACTTAGGAGGAGGAGGAAACCCAATTCTCTGAGCTTAAATGTGAATGTGCTTGCTGGAGCTCTCAAGAAGATTGATAATACTTTGGTAGTTGCTAGTTTTGGGCTTGAGGATTGTTCAAGATTTTTCTGTTCAGATGCCATCGTTGTCGACATGACGGTCCATCAGTCCAAGAATGACATATTGAGAAAATGGTTTCCAAAGCCGCCTGTTGTTGAAGGTGCACCATCCCAAGTTGGATCTGTTGAAGTTGGAGGTAGTAGTTCTTGCAGTGGTGTACAATCTGCAAATAATTCTGAAGGAGGAAAGAGTTCTAAACTTTCTCCTTCAGACTCCAGCTTGGTAAAAGAGACTGATGTTGCAGATGAAACACAATGTGAAGCTGAATTCAGTCACAGTAAAGATGAGAGTAATTGCATATCCAAAGTGTCAGCTGAGAAGCAGTGTGATGCCGAAGACAGCCACACAGAAGGCGAGCAAAACTGCGCATCCAGTGAGTCAAATCTGACATGCCAACAAGATGTCAATGCTTCCACCCCATCCGGCAGTAAAGAAGCTGGAAGCGAGGCCAAGAACAAGACAAAGGGCAAGAACAAGAAAAACAAGAAGAAAGGCGGGCGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

2728

Amino Acids

310.13

Weight (kDa)

6.14

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_11 PF13086 7 - 360 1.2e-33 AAA domain
AAA_19 PF13245 8 - 356 3.5e-08 AAA domain
AAA_12 PF13087 369 - 565 2.8e-54 AAA domain
UvrD-helicase PF00580 1077 - 1165 1.6e-08 UvrD/REP helicase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 2067, 2156, 2429, 6036, 6498
AarI CACCTGC 1 cut(s) 4681
AasI GACNNNNNNGTC 1 cut(s) 7715
AatII GACGTC 1 cut(s) 7309
Acc16I TGCGCA 2 cut(s) 5659, 8044
Acc36I ACCTGC 1 cut(s) 4681
AccB1I GGYRCC 1 cut(s) 3441
AccB7I CCANNNNNTGG 3 cut(s) 1178, 1471, 2832
AccBSI CCGCTC 1 cut(s) 6542
AccI GTMKAC 3 cut(s) 1599, 4189, 7707
AccII CGCG 1 cut(s) 7353
AclI AACGTT 1 cut(s) 6585
AcoI YGGCCR 5 cut(s) 519, 3110, 3829, 5178, 6913
AcyI GRCGYC 1 cut(s) 7306
AdeI CACNNNGTG 3 cut(s) 1783, 5187, 7934
AflII CTTAAG 3 cut(s) 695, 4955, 5831
AflIII ACRYGT 2 cut(s) 681, 3580
AhdI GACNNNNNGTC 1 cut(s) 3549
AhlI ACTAGT 1 cut(s) 524
AjuI GAANNNNNNNTTGG 4 cut(s) 3438, 3470, 3690, 3722
AloI GAACNNNNNNTCC 2 cut(s) 5260, 5292
Alw21I GWGCWC 9 cut(s) 310, 722, 979, 4949, 6381, 6972, 7046, 7621, 7783
Alw44I GTGCAC 2 cut(s) 718, 7779
AlwNI CAGNNNCTG 5 cut(s) 1919, 3392, 3512, 3824, 6421
Ama87I CYCGRG 2 cut(s) 267, 6944
ApaLI GTGCAC 2 cut(s) 718, 7779
ArsI GACNNNNNNTTYG 4 cut(s) 1341, 1373, 1592, 1624
AseI ATTAAT 3 cut(s) 3057, 5565, 7467
Asp700I GAANNNNTTC 5 cut(s) 2762, 4464, 5714, 7019, 7867
AspLEI GCGC 5 cut(s) 3531, 5660, 6050, 7191, 8045
AsuC2I CCSGG 2 cut(s) 3133, 4067
AsuII TTCGAA 1 cut(s) 5403
AvaI CYCGRG 2 cut(s) 267, 6944
AvaII GGWCC 6 cut(s) 147, 893, 2141, 2584, 6445, 7717
AxyI CCTNAGG 1 cut(s) 4902
BaeGI GKGCMC 3 cut(s) 722, 4720, 7783
BaeI ACNNNNGTAYC 2 cut(s) 4520, 4553
BalI TGGCCA 4 cut(s) 3112, 3831, 5180, 6915
BanI GGYRCC 1 cut(s) 3441
BanII GRGCYC 5 cut(s) 420, 6381, 6661, 6972, 7621
BarI GAAGNNNNNNTAC 4 cut(s) 4164, 4196, 7176, 7208
BauI CACGAG 2 cut(s) 2108, 7483
BbsI GAAGAC 3 cut(s) 2634, 5025, 8019
Bbv12I GWGCWC 9 cut(s) 310, 722, 979, 4949, 6381, 6972, 7046, 7621, 7783
BceAI ACGGC 3 cut(s) 860, 1125, 1381
BciVI GTATCC 1 cut(s) 6280
BclI TGATCA 2 cut(s) 4216, 6936
BcnI CCSGG 2 cut(s) 3133, 4067
BcuI ACTAGT 1 cut(s) 524
BfoI RGCGCY 1 cut(s) 7192
BfrI CTTAAG 3 cut(s) 695, 4955, 5831
BfuAI ACCTGC 1 cut(s) 4681
BfuI GTATCC 1 cut(s) 6280
BglII AGATCT 2 cut(s) 4177, 4252
BlpI GCTNAGC 2 cut(s) 222, 6966
Bme18I GGWCC 6 cut(s) 147, 893, 2141, 2584, 6445, 7717
BmeRI GACNNNNNGTC 1 cut(s) 3549
BmeT110I CYCGRG 2 cut(s) 267, 6944
BmiI GGNNCC 7 cut(s) 149, 417, 894, 3443, 3920, 5762, 6447
BmrI ACTGGG 5 cut(s) 25, 834, 3402, 5224, 6774
BmuI ACTGGG 5 cut(s) 25, 834, 3402, 5224, 6774
BoxI GACNNNNGTC 1 cut(s) 2780
BpiI GAAGAC 3 cut(s) 2634, 5025, 8019
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 9 cut(s) 173, 3011, 4587, 4641, 6243, 6339, 7156, 7635, 7876
Bpu10I CCTNAGC 3 cut(s) 3933, 4000, 5601
Bpu1102I GCTNAGC 2 cut(s) 222, 6966
Bpu14I TTCGAA 1 cut(s) 5403
BpuMI CCSGG 2 cut(s) 3133, 4067
BsaBI GATNNNNATC 2 cut(s) 3087, 6174
BsaHI GRCGYC 1 cut(s) 7306
BsaI GGTCTC 1 cut(s) 2830
BsaXI ACNNNNNCTCC 4 cut(s) 5972, 6002, 6216, 6246
Bse118I RCCGGY 2 cut(s) 4035, 4496
Bse21I CCTNAGG 1 cut(s) 4902
Bse3DI GCAATG 9 cut(s) 172, 674, 1189, 1794, 1936, 2139, 2605, 5820, 6939
Bse8I GATNNNNATC 2 cut(s) 3087, 6174
BseJI GATNNNNATC 2 cut(s) 3087, 6174
BseMI GCAATG 9 cut(s) 172, 674, 1189, 1794, 1936, 2139, 2605, 5820, 6939
BseRI GAGGAG 8 cut(s) 2192, 3509, 3686, 5141, 5628, 5996, 7582, 7585
BseSI GKGCMC 3 cut(s) 722, 4720, 7783
BseYI CCCAGC 2 cut(s) 5826, 7510
BsgI GTGCAG 4 cut(s) 1760, 1809, 4704, 6673
Bsh1236I CGCG 1 cut(s) 7353
BshNI GGYRCC 1 cut(s) 3441
BsiHKAI GWGCWC 9 cut(s) 310, 722, 979, 4949, 6381, 6972, 7046, 7621, 7783
BsiHKCI CYCGRG 2 cut(s) 267, 6944
BsiSI CCGG 6 cut(s) 3133, 4036, 4066, 4497, 5238, 8100
BslFI GGGAC 7 cut(s) 133, 802, 906, 2990, 3393, 5753, 6431
BsmFI GGGAC 7 cut(s) 133, 802, 906, 2990, 3393, 5753, 6431
BsmI GAATGC 7 cut(s) 280, 1316, 2028, 2701, 6238, 6967, 7004
Bso31I GGTCTC 1 cut(s) 2830
BsoBI CYCGRG 2 cut(s) 267, 6944
Bsp119I TTCGAA 1 cut(s) 5403
Bsp1407I TGTACA 2 cut(s) 2253, 7834
Bsp1720I GCTNAGC 2 cut(s) 222, 6966
Bsp19I CCATGG 2 cut(s) 7010, 7541
Bsp68I TCGCGA 1 cut(s) 7353
BspFNI CGCG 1 cut(s) 7353
BspHI TCATGA 2 cut(s) 4641, 5158
BspLI GGNNCC 7 cut(s) 149, 417, 894, 3443, 3920, 5762, 6447
BspMAI CTGCAG 6 cut(s) 951, 1393, 3508, 5440, 5479, 6744
BspMI ACCTGC 1 cut(s) 4681
BspT104I TTCGAA 1 cut(s) 5403
BspT107I GGYRCC 1 cut(s) 3441
BspTI CTTAAG 3 cut(s) 695, 4955, 5831
BspTNI GGTCTC 1 cut(s) 2830
BsrBI CCGCTC 1 cut(s) 6542
BsrDI GCAATG 9 cut(s) 172, 674, 1189, 1794, 1936, 2139, 2605, 5820, 6939
BsrFI RCCGGY 2 cut(s) 4035, 4496
BsrGI TGTACA 2 cut(s) 2253, 7834
BssAI RCCGGY 2 cut(s) 4035, 4496
BssNI GRCGYC 1 cut(s) 7306
BssSI CACGAG 2 cut(s) 2108, 7483
BssT1I CCWWGG 7 cut(s) 1545, 2643, 5490, 5863, 6716, 7010, 7541
Bst2BI CACGAG 2 cut(s) 2108, 7483
Bst6I CTCTTC 8 cut(s) 1312, 2167, 2409, 3330, 4299, 5277, 6187, 7332
BstACI GRCGYC 1 cut(s) 7306
BstAFI CTTAAG 3 cut(s) 695, 4955, 5831
BstAPI GCANNNNNTGC 2 cut(s) 314, 5822
BstAUI TGTACA 2 cut(s) 2253, 7834
BstBI TTCGAA 1 cut(s) 5403
BstDSI CCRYGG 3 cut(s) 921, 7010, 7541
BstENI CCTNNNNNAGG 1 cut(s) 5867
BstFNI CGCG 1 cut(s) 7353
BstH2I RGCGCY 1 cut(s) 7192
BstHHI GCGC 5 cut(s) 3531, 5660, 6050, 7191, 8045
BstNSI RCATGY 9 cut(s) 685, 1883, 3584, 4020, 4754, 5585, 6752, 6862, 8070
BstPAI GACNNNNGTC 1 cut(s) 2780
BstSLI GKGCMC 3 cut(s) 722, 4720, 7783
BstUI CGCG 1 cut(s) 7353
BstV2I GAAGAC 3 cut(s) 2634, 5025, 8019
BstX2I RGATCY 7 cut(s) 172, 3142, 3310, 4177, 4252, 5690, 7796
BstXI CCANNNNNNTGG 2 cut(s) 3108, 5130
BstYI RGATCY 7 cut(s) 172, 3142, 3310, 4177, 4252, 5690, 7796
Bsu36I CCTNAGG 1 cut(s) 4902
BsuI GTATCC 1 cut(s) 6280
BtgI CCRYGG 3 cut(s) 921, 7010, 7541
BtgZI GCGATG 1 cut(s) 1716
BtsI GCAGTG 7 cut(s) 837, 1398, 1752, 5894, 6737, 7834, 8006
BtuMI TCGCGA 1 cut(s) 7353
BveI ACCTGC 1 cut(s) 4681
CaiI CAGNNNCTG 5 cut(s) 1919, 3392, 3512, 3824, 6421
CciI TCATGA 2 cut(s) 4641, 5158
CfoI GCGC 5 cut(s) 3531, 5660, 6050, 7191, 8045
Cfr10I RCCGGY 2 cut(s) 4035, 4496
CseI GACGC 1 cut(s) 5333
CsiI ACCWGGT 1 cut(s) 7162
CspCI CAANNNNNGTGG 4 cut(s) 3102, 3137, 7419, 7454
DraI TTTAAA 2 cut(s) 574, 4282
DraIII CACNNNGTG 3 cut(s) 1783, 5187, 7934
DrdI GACNNNNNNGTC 1 cut(s) 7715
DriI GACNNNNNGTC 1 cut(s) 3549
DseDI GACNNNNNNGTC 1 cut(s) 7715
EaeI YGGCCR 5 cut(s) 519, 3110, 3829, 5178, 6913
Eam1104I CTCTTC 8 cut(s) 1312, 2167, 2409, 3330, 4299, 5277, 6187, 7332
Eam1105I GACNNNNNGTC 1 cut(s) 3549
EarI CTCTTC 8 cut(s) 1312, 2167, 2409, 3330, 4299, 5277, 6187, 7332
EciI GGCGGA 2 cut(s) 5354, 7416
Ecl136II GAGCTC 3 cut(s) 6379, 6970, 7619
Eco130I CCWWGG 7 cut(s) 1545, 2643, 5490, 5863, 6716, 7010, 7541
Eco147I AGGCCT 3 cut(s) 4449, 5891, 7019
Eco24I GRGCYC 5 cut(s) 420, 6381, 6661, 6972, 7621
Eco31I GGTCTC 1 cut(s) 2830
Eco32I GATATC 1 cut(s) 3694
Eco47I GGWCC 6 cut(s) 147, 893, 2141, 2584, 6445, 7717
Eco53kI GAGCTC 3 cut(s) 6379, 6970, 7619
Eco81I CCTNAGG 1 cut(s) 4902
Eco88I CYCGRG 2 cut(s) 267, 6944
EcoICRI GAGCTC 3 cut(s) 6379, 6970, 7619
EcoNI CCTNNNNNAGG 1 cut(s) 5867
EcoO109I RGGNCCY 2 cut(s) 893, 4783
EcoRI GAATTC 4 cut(s) 1259, 5642, 6359, 7943
EcoRV GATATC 1 cut(s) 3694
EcoT14I CCWWGG 7 cut(s) 1545, 2643, 5490, 5863, 6716, 7010, 7541
EcoT22I ATGCAT 2 cut(s) 2028, 4018
EcoT38I GRGCYC 5 cut(s) 420, 6381, 6661, 6972, 7621
ErhI CCWWGG 7 cut(s) 1545, 2643, 5490, 5863, 6716, 7010, 7541
FalI AAGNNNNNCTT 2 cut(s) 3548, 3580
FaqI GGGAC 7 cut(s) 133, 802, 906, 2990, 3393, 5753, 6431
FauI CCCGC 3 cut(s) 5449, 5730, 8165
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 2 cut(s) 4216, 6936
FblI GTMKAC 3 cut(s) 1599, 4189, 7707
FriOI GRGCYC 5 cut(s) 420, 6381, 6661, 6972, 7621
FspI TGCGCA 2 cut(s) 5659, 8044
GlaI GCGC 5 cut(s) 3530, 5659, 6049, 7190, 8044
GsaI CCCAGC 2 cut(s) 5830, 7514
GsuI CTGGAG 9 cut(s) 173, 3011, 4587, 4641, 6243, 6339, 7156, 7635, 7876
HaeII RGCGCY 1 cut(s) 7192
HapII CCGG 6 cut(s) 3133, 4036, 4066, 4497, 5238, 8100
HgaI GACGC 1 cut(s) 5333
HhaI GCGC 5 cut(s) 3531, 5660, 6050, 7191, 8045
Hin1I GRCGYC 1 cut(s) 7306
Hin6I GCGC 5 cut(s) 3529, 5658, 6048, 7189, 8043
HinP1I GCGC 5 cut(s) 3529, 5658, 6048, 7189, 8043
HincII GTYRAC 6 cut(s) 1848, 4190, 4473, 6735, 7132, 7708
HindII GTYRAC 6 cut(s) 1848, 4190, 4473, 6735, 7132, 7708
HindIII AAGCTT 5 cut(s) 1960, 2360, 3947, 5712, 6980
HpaII CCGG 6 cut(s) 3133, 4036, 4066, 4497, 5238, 8100
Hpy99I CGWCG 2 cut(s) 92, 4191
HpyCH4IV ACGT 5 cut(s) 3954, 4047, 6585, 7285, 7306
HpySE526I ACGT 5 cut(s) 3954, 4047, 6585, 7285, 7306
Hsp92I GRCGYC 1 cut(s) 7306
HspAI GCGC 5 cut(s) 3529, 5658, 6048, 7189, 8043
KroI GCCGGC 1 cut(s) 4035
KroNI GCCGGC 1 cut(s) 4037
Ksp22I TGATCA 2 cut(s) 4216, 6936
MabI ACCWGGT 1 cut(s) 7162
MaeII ACGT 5 cut(s) 3954, 4047, 6585, 7285, 7306
MbiI CCGCTC 1 cut(s) 6542
MflI RGATCY 7 cut(s) 172, 3142, 3310, 4177, 4252, 5690, 7796
MlsI TGGCCA 4 cut(s) 3112, 3831, 5180, 6915
MluNI TGGCCA 4 cut(s) 3112, 3831, 5180, 6915
Mox20I TGGCCA 4 cut(s) 3112, 3831, 5180, 6915
Mph1103I ATGCAT 2 cut(s) 2028, 4018
MroNI GCCGGC 1 cut(s) 4035
MroXI GAANNNNTTC 5 cut(s) 2762, 4464, 5714, 7019, 7867
MscI TGGCCA 4 cut(s) 3112, 3831, 5180, 6915
MslI CAYNNNNRTG 7 cut(s) 1415, 1569, 2622, 3927, 4056, 5169, 6108
Msp20I TGGCCA 4 cut(s) 3112, 3831, 5180, 6915
MspA1I CMGCKG 1 cut(s) 7991
MspCI CTTAAG 3 cut(s) 695, 4955, 5831
MspI CCGG 6 cut(s) 3133, 4036, 4066, 4497, 5238, 8100
MssI GTTTAAAC 1 cut(s) 4282
Mva1269I GAATGC 7 cut(s) 280, 1316, 2028, 2701, 6238, 6967, 7004
MvnI CGCG 1 cut(s) 7353
NaeI GCCGGC 1 cut(s) 4037
NciI CCSGG 2 cut(s) 3133, 4067
NcoI CCATGG 2 cut(s) 7010, 7541
NdeI CATATG 1 cut(s) 349
NgoMIV GCCGGC 1 cut(s) 4035
NlaIV GGNNCC 7 cut(s) 149, 417, 894, 3443, 3920, 5762, 6447
NmeAIII GCCGAG 1 cut(s) 6076
NmuCI GTSAC 6 cut(s) 3179, 3541, 3814, 5837, 7294, 7949
NruI TCGCGA 1 cut(s) 7353
NsbI TGCGCA 2 cut(s) 5659, 8044
NsiI ATGCAT 2 cut(s) 2028, 4018
NspI RCATGY 9 cut(s) 685, 1883, 3584, 4020, 4754, 5585, 6752, 6862, 8070
NspV TTCGAA 1 cut(s) 5403
PaeI GCATGC 3 cut(s) 1883, 4754, 5585
PagI TCATGA 2 cut(s) 4641, 5158
PaqCI CACCTGC 1 cut(s) 4681
PasI CCCWGGG 1 cut(s) 7315
PceI AGGCCT 3 cut(s) 4449, 5891, 7019
PciI ACATGT 2 cut(s) 681, 3580
PctI GAATGC 7 cut(s) 280, 1316, 2028, 2701, 6238, 6967, 7004
PdiI GCCGGC 1 cut(s) 4037
PdmI GAANNNNTTC 5 cut(s) 2762, 4464, 5714, 7019, 7867
PflFI GACNNNGTC 1 cut(s) 2199
PflMI CCANNNNNTGG 3 cut(s) 1178, 1471, 2832
PfoI TCCNGGA 2 cut(s) 2076, 2125
PmeI GTTTAAAC 1 cut(s) 4282
PpuMI RGGWCCY 1 cut(s) 893
PscI ACATGT 2 cut(s) 681, 3580
PshAI GACNNNNGTC 1 cut(s) 2780
PshBI ATTAAT 3 cut(s) 3057, 5565, 7467
PsiI TTATAA 5 cut(s) 2067, 2156, 2429, 6036, 6498
Psp124BI GAGCTC 3 cut(s) 6381, 6972, 7621
Psp1406I AACGTT 1 cut(s) 6585
Psp5II RGGWCCY 1 cut(s) 893
PspFI CCCAGC 2 cut(s) 5826, 7510
PspN4I GGNNCC 7 cut(s) 149, 417, 894, 3443, 3920, 5762, 6447
PspPPI RGGWCCY 1 cut(s) 893
PsrI GAACNNNNNNTAC 2 cut(s) 4866, 4898
PstI CTGCAG 6 cut(s) 951, 1393, 3508, 5440, 5479, 6744
PstNI CAGNNNCTG 5 cut(s) 1919, 3392, 3512, 3824, 6421
PsuI RGATCY 7 cut(s) 172, 3142, 3310, 4177, 4252, 5690, 7796
PsyI GACNNNGTC 1 cut(s) 2199
PvuII CAGCTG 1 cut(s) 7991
RruI TCGCGA 1 cut(s) 7353
RseI CAYNNNNRTG 7 cut(s) 1415, 1569, 2622, 3927, 4056, 5169, 6108
SacI GAGCTC 3 cut(s) 6381, 6972, 7621
SalI GTCGAC 2 cut(s) 4188, 7706
SexAI ACCWGGT 1 cut(s) 7162
SfuI TTCGAA 1 cut(s) 5403
SinI GGWCC 6 cut(s) 147, 893, 2141, 2584, 6445, 7717
SmiMI CAYNNNNRTG 7 cut(s) 1415, 1569, 2622, 3927, 4056, 5169, 6108
SpeI ACTAGT 1 cut(s) 524
SphI GCATGC 3 cut(s) 1883, 4754, 5585
SseBI AGGCCT 3 cut(s) 4449, 5891, 7019
SspI AATATT 4 cut(s) 1693, 1746, 3715, 5319
SstI GAGCTC 3 cut(s) 6381, 6972, 7621
StuI AGGCCT 3 cut(s) 4449, 5891, 7019
StyI CCWWGG 7 cut(s) 1545, 2643, 5490, 5863, 6716, 7010, 7541
TaiI ACGT 5 cut(s) 3957, 4050, 6588, 7288, 7309
TatI WGTACW 6 cut(s) 1424, 2253, 4402, 4759, 5211, 7834
TauI GCSGC 2 cut(s) 6542, 7765
TseFI GTSAC 6 cut(s) 3179, 3541, 3814, 5837, 7294, 7949
Tsp45I GTSAC 6 cut(s) 3179, 3541, 3814, 5837, 7294, 7949
TspGWI ACGGA 2 cut(s) 2133, 4475
Tth111I GACNNNGTC 1 cut(s) 2199
Van91I CCANNNNNTGG 3 cut(s) 1178, 1471, 2832
Vha464I CTTAAG 3 cut(s) 695, 4955, 5831
VneI GTGCAC 2 cut(s) 718, 7779
VpaK11BI GGWCC 6 cut(s) 147, 893, 2141, 2584, 6445, 7717
VspI ATTAAT 3 cut(s) 3057, 5565, 7467
XagI CCTNNNNNAGG 1 cut(s) 5867
XbaI TCTAGA 2 cut(s) 3091, 6257
XceI RCATGY 9 cut(s) 685, 1883, 3584, 4020, 4754, 5585, 6752, 6862, 8070
XcmI CCANNNNNNNNNTGG 1 cut(s) 1179
XmiI GTMKAC 3 cut(s) 1599, 4189, 7707
XmnI GAANNNNTTC 5 cut(s) 2762, 4464, 5714, 7019, 7867
ZraI GACGTC 1 cut(s) 7307
Zsp2I ATGCAT 2 cut(s) 2028, 4018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.