Rh4AG427400

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000223
Physical Location & Seq
Forward (+)
72358955 .. 72364683
5729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG427400.1

Sequence Viewer

Length: 1212 bp
ATGGTGGATGGTGGTAAGGATGATATTCCTTGCTGGCAGTCTGAGATTGATGGCGAGATGGAGGGATCTCGGCACAAAGCAGGGGCTGCCAGTGATGTTGCCGGTGGTGGGACAACACGGGACTTGCAGGCGGGCTGGCGGTGCGGCAGAACTGATGCTGGTCACCTTCAACTTGGGCGTGGAGAGATATGCGTTGATGACGTCATGCGTCTGACGCTTGAGGTTCAGAAAGCTTCACTGACACTGCTTTCTTGGTCTCTTGAAGACATATGTAATGAAAACCTTTACAAGCACCAGGTTGGAAGCCCTGAATCATTTCAGTCCGACCTTCATCAATATTTTGCATCTTACAAATATCCTTTATTGGAGGACACTCGAGCTCAACTGCAATGCAGGATCGGAACCCTGTATAAAGCACCATTTGGTAAAGTAATTTCTATACAAGAATCCAATCCGCATGGAACAAAGCAATACAGTGTCAAAGTTGATTCTTGGAGAAACAGTGTCATTAAGGAATGCAAAACTAGGCCTGGGGATCTTTTTATTTTAGCAGATGCTAAAGCTGAAAGTGTTTCTGATTTACAAAAGGAAGGGAGATCATGGGTGTTTCTAATAGCCATTGAAGTATTCCCAAAGAGTAGGAGTGAGGATGATGATGGTTTTATCAAGCTCTGCTGCATGAAGTATTTTGAGGGTAACTTGGAAGTTCCAATGATCTGGCCAGCCTCCTTGGATGTCATCCGATATAAGGATCTTTGCGTCACTAGTGATTCAGTGGATGACGTGTCTAAGGATGAAAGTTATGTTGAAAATTCAAAGGTCAGTGAGAGTTTGTTGCTGATGAAATTCTACTCCTTATCATCTGGGCTCATGAATCACTTGCTCTCTGACCTTCAGGGCAGAGAGTTGGTTCTCCCATTTGAACTTACTGACGAAGAAATGGAGGCCATACTTTACAATAGAAGTACATTCATAGCTGGGCGATCAGGCACTGGGAAGACCACTGTTTTAACAATGAAGTTATTTCAGAAGGAACAGTATTACAATATGGCAGAGGAAGGATTGTATGCTGTCGAGCAGAGTTCTGGAGGTTTTAATGCAACTGTTTTACGTCAGATATTTGTAACAGTTAGTCCAGAACTCTGTATTGCCGTTAAGCAACATGTTTCAAACTTGAAAAGGGACTATGACTTTGGAAAGCTCTGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

403

Amino Acids

45.27

Weight (kDa)

5.05

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 140 - 218 5.7e-21 Domain of unknown function (DUF6469)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AciI CCGC 4 cut(s) 131, 139, 144, 455
AclWI GGATC 4 cut(s) 73, 404, 543, 759
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 2 cut(s) 811, 845
AcuI CTGAAG 1 cut(s) 878
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 967
AfiI CCNNNNNNNGG 2 cut(s) 108, 748
AflIII ACRYGT 2 cut(s) 783, 1162
AgsI TTSAA 8 cut(s) 170, 263, 623, 809, 816, 923, 1170, 1177
AhlI ACTAGT 1 cut(s) 764
AjiI CACGTC 1 cut(s) 784
AjnI CCWGG 2 cut(s) 294, 529
AluBI AGCT 6 cut(s) 233, 380, 563, 670, 977, 1201
AluI AGCT 6 cut(s) 233, 380, 563, 670, 977, 1201
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 4 cut(s) 73, 404, 543, 759
AlwNI CAGNNNCTG 2 cut(s) 86, 992
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 3 cut(s) 527, 719, 945
ApeKI GCWGC 2 cut(s) 86, 675
ApoI RAATTY 2 cut(s) 811, 845
ArsI GACNNNNNNTTYG 2 cut(s) 1175, 1207
Asp700I GAANNNNTTC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 375
BalI TGGCCA 1 cut(s) 721
BanII GRGCYC 2 cut(s) 382, 870
BbsI GAAGAC 2 cut(s) 270, 1004
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 73, 662
BccI CCATC 4 cut(s) 2, 44, 52, 650
BceAI ACGGC 1 cut(s) 1136
BciT130I CCWGG 2 cut(s) 296, 531
BcoDI GTCTC 1 cut(s) 261
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 2 cut(s) 525, 765
BisI GCNGC 3 cut(s) 87, 145, 676
BlsI GCNGC 3 cut(s) 88, 146, 677
Bme1390I CCNGG 2 cut(s) 296, 531
BmeT110I CYCGRG 1 cut(s) 375
BmgBI CACGTC 1 cut(s) 784
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 2 cut(s) 296, 531
BmrI ACTGGG 1 cut(s) 1002
BmsI GCATC 3 cut(s) 145, 353, 544
BmuI ACTGGG 1 cut(s) 1002
BpiI GAAGAC 2 cut(s) 270, 1004
BpmI CTGGAG 1 cut(s) 1107
BpuEI CTTGAG 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 530, 729
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 748
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 90, 997
Bse3DI GCAATG 1 cut(s) 395
BseBI CCWGG 2 cut(s) 296, 531
BseDI CCNNGG 2 cut(s) 530, 729
BseGI GGATG 7 cut(s) 13, 25, 655, 738, 739, 784, 799
BseLI CCNNNNNNNGG 2 cut(s) 108, 748
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 90, 997
BseXI GCAGC 2 cut(s) 73, 662
BseYI CCCAGC 1 cut(s) 977
BshFI GGCC 3 cut(s) 529, 721, 947
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 3 cut(s) 124, 134, 1196
BslI CCNNNNNNNGG 2 cut(s) 108, 748
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 3 cut(s) 124, 134, 1196
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 3 cut(s) 529, 721, 947
Bso31I GGTCTC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 2 cut(s) 382, 870
Bsp143I GATC 7 cut(s) 65, 396, 535, 596, 714, 751, 983
BspACI CCGC 4 cut(s) 131, 139, 144, 455
BspANI GGCC 3 cut(s) 529, 721, 947
BspCNI CTCAG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 1 cut(s) 403
BspPI GGATC 4 cut(s) 73, 404, 543, 759
BspTNI GGTCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 90, 997
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 530, 729
BssMI GATC 7 cut(s) 65, 396, 535, 596, 714, 751, 983
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 2 cut(s) 296, 531
Bst4CI ACNGT 6 cut(s) 476, 503, 1006, 1038, 1105, 1129
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 5 cut(s) 35, 129, 133, 137, 723
BstDEI CTNAG 2 cut(s) 42, 789
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 7 cut(s) 13, 25, 655, 738, 739, 784, 799
BstKTI GATC 7 cut(s) 68, 399, 538, 599, 717, 754, 986
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 7 cut(s) 65, 396, 535, 596, 714, 751, 983
BstMWI GCNNNNNNNGC 3 cut(s) 86, 141, 214
BstNI CCWGG 2 cut(s) 296, 531
BstNSI RCATGY 1 cut(s) 1166
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 294, 529
BstV1I GCAGC 2 cut(s) 73, 662
BstV2I GAAGAC 2 cut(s) 270, 1004
BstX2I RGATCY 3 cut(s) 65, 535, 751
BstXI CCANNNNNNTGG 1 cut(s) 717
BstYI RGATCY 3 cut(s) 65, 535, 751
BsuRI GGCC 3 cut(s) 529, 721, 947
BtrI CACGTC 1 cut(s) 784
BtsCI GGATG 7 cut(s) 13, 25, 655, 738, 739, 784, 799
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 9 cut(s) 97, 236, 242, 481, 508, 780, 829, 990, 1002
Cac8I GCNNGC 5 cut(s) 35, 129, 133, 137, 723
CaiI CAGNNNCTG 2 cut(s) 86, 992
CciI TCATGA 1 cut(s) 870
Cfr10I RCCGGY 1 cut(s) 101
CseI GACGC 3 cut(s) 197, 223, 748
CsiI ACCWGGT 1 cut(s) 294
Csp6I GTAC 1 cut(s) 966
CviAII CATG 6 cut(s) 205, 458, 600, 679, 871, 1163
CviQI GTAC 1 cut(s) 966
DdeI CTNAG 2 cut(s) 42, 789
DpnI GATC 7 cut(s) 67, 398, 537, 598, 716, 753, 985
DpnII GATC 7 cut(s) 65, 396, 535, 596, 714, 751, 983
EaeI YGGCCR 1 cut(s) 719
Ecl136II GAGCTC 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 729
Eco147I AGGCCT 1 cut(s) 529
Eco24I GRGCYC 2 cut(s) 382, 870
Eco31I GGTCTC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 878
Eco88I CYCGRG 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 380
EcoO65I GGTNACC 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 294, 529
EcoT14I CCWWGG 1 cut(s) 729
EcoT38I GRGCYC 2 cut(s) 382, 870
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 6 cut(s) 208, 461, 603, 682, 874, 1166
FaqI GGGAC 3 cut(s) 124, 134, 1196
FatI CATG 6 cut(s) 204, 457, 599, 678, 870, 1162
FauI CCCGC 1 cut(s) 124
FauNDI CATATG 1 cut(s) 269
Fnu4HI GCNGC 3 cut(s) 87, 145, 676
FokI GGATG 7 cut(s) 20, 32, 662, 725, 746, 791, 806
FriOI GRGCYC 2 cut(s) 382, 870
Fsp4HI GCNGC 3 cut(s) 87, 145, 676
FspBI CTAG 2 cut(s) 525, 765
GluI GCNGC 3 cut(s) 87, 145, 676
GsaI CCCAGC 1 cut(s) 981
GsuI CTGGAG 1 cut(s) 1107
HaeIII GGCC 3 cut(s) 529, 721, 947
HapII CCGG 1 cut(s) 102
HgaI GACGC 3 cut(s) 197, 223, 748
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 6 cut(s) 208, 461, 603, 682, 874, 1166
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 5 cut(s) 311, 446, 488, 770, 874
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 155
Hpy188III TCNNGA 4 cut(s) 260, 871, 1086, 1136
HpyAV CCTTC 6 cut(s) 176, 338, 584, 902, 1024, 1052
HpyCH4III ACNGT 6 cut(s) 476, 503, 1006, 1038, 1105, 1129
HpyCH4IV ACGT 3 cut(s) 201, 783, 1111
HpyCH4V TGCA 7 cut(s) 127, 344, 388, 393, 519, 678, 1100
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 141, 214
HpyF3I CTNAG 2 cut(s) 42, 789
HpySE526I ACGT 3 cut(s) 201, 783, 1111
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 6 cut(s) 208, 461, 603, 682, 874, 1166
Kzo9I GATC 7 cut(s) 65, 396, 535, 596, 714, 751, 983
Lsp1109I GCAGC 2 cut(s) 73, 662
LweI GCATC 3 cut(s) 145, 353, 544
MabI ACCWGGT 1 cut(s) 294
MaeI CTAG 2 cut(s) 525, 765
MaeII ACGT 3 cut(s) 201, 783, 1111
MaeIII GTNAC 4 cut(s) 161, 695, 760, 1123
MalI GATC 7 cut(s) 67, 398, 537, 598, 716, 753, 985
MboI GATC 7 cut(s) 65, 396, 535, 596, 714, 751, 983
MboII GAAGA 3 cut(s) 275, 947, 1009
MflI RGATCY 3 cut(s) 65, 535, 751
MhlI GDGCHC 2 cut(s) 382, 870
MlsI TGGCCA 1 cut(s) 721
MluCI AATT 3 cut(s) 432, 811, 845
MluNI TGGCCA 1 cut(s) 721
MmeI TCCRAC 2 cut(s) 280, 348
MnlI CCTC 9 cut(s) 55, 214, 361, 640, 685, 736, 937, 1048, 1082
Mox20I TGGCCA 1 cut(s) 721
MroXI GAANNNNTTC 1 cut(s) 315
MscI TGGCCA 1 cut(s) 721
MseI TTAA 4 cut(s) 510, 1010, 1095, 1155
Msp20I TGGCCA 1 cut(s) 721
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 296, 531
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 2 cut(s) 296, 531
MwoI GCNNNNNNNGC 3 cut(s) 86, 141, 214
NdeI CATATG 1 cut(s) 269
NdeII GATC 7 cut(s) 65, 396, 535, 596, 714, 751, 983
NlaIII CATG 6 cut(s) 208, 461, 603, 682, 874, 1166
NlaIV GGNNCC 1 cut(s) 403
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 2 cut(s) 161, 760
NspI RCATGY 1 cut(s) 1166
PaeR7I CTCGAG 1 cut(s) 375
PagI TCATGA 1 cut(s) 870
PceI AGGCCT 1 cut(s) 529
PciI ACATGT 1 cut(s) 1162
PctI GAATGC 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 5 cut(s) 311, 446, 488, 770, 874
PkrI GCNGC 3 cut(s) 88, 146, 677
PscI ACATGT 1 cut(s) 1162
Psp124BI GAGCTC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 294, 529
PspEI GGTNACC 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 977
PspGI CCWGG 2 cut(s) 294, 529
PspN4I GGNNCC 1 cut(s) 403
PspXI VCTCGAGB 1 cut(s) 375
PstNI CAGNNNCTG 2 cut(s) 86, 992
PsuI RGATCY 3 cut(s) 65, 535, 751
RsaI GTAC 1 cut(s) 967
RsaNI GTAC 1 cut(s) 966
SacI GAGCTC 1 cut(s) 382
SaqAI TTAA 4 cut(s) 510, 1010, 1095, 1155
SatI GCNGC 3 cut(s) 87, 145, 676
Sau3AI GATC 7 cut(s) 65, 396, 535, 596, 714, 751, 983
ScrFI CCNGG 2 cut(s) 296, 531
SduI GDGCHC 2 cut(s) 382, 870
SexAI ACCWGGT 1 cut(s) 294
SfaNI GCATC 3 cut(s) 145, 353, 544
Sfr274I CTCGAG 1 cut(s) 375
SlaI CTCGAG 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 218, 375
SmoI CTYRAG 2 cut(s) 218, 375
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 3 cut(s) 432, 811, 845
SseBI AGGCCT 1 cut(s) 529
SsiI CCGC 4 cut(s) 131, 139, 144, 455
SspI AATATT 1 cut(s) 338
SspMI CTAG 2 cut(s) 525, 765
SstI GAGCTC 1 cut(s) 382
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 2 cut(s) 294, 529
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 6 cut(s) 476, 503, 1006, 1038, 1105, 1129
TaiI ACGT 3 cut(s) 204, 786, 1114
TaqI TCGA 2 cut(s) 376, 1074
TasI AATT 3 cut(s) 432, 811, 845
TatI WGTACW 1 cut(s) 965
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 5 cut(s) 311, 446, 488, 770, 874
Tru1I TTAA 4 cut(s) 510, 1010, 1095, 1155
Tru9I TTAA 4 cut(s) 510, 1010, 1095, 1155
TscAI CASTG 9 cut(s) 97, 243, 249, 481, 508, 780, 829, 997, 1009
TseFI GTSAC 2 cut(s) 161, 760
TseI GCWGC 2 cut(s) 86, 675
Tsp45I GTSAC 2 cut(s) 161, 760
TspDTI ATGAA 8 cut(s) 291, 320, 695, 810, 857, 887, 961, 1031
TspRI CASTG 9 cut(s) 97, 243, 249, 481, 508, 780, 829, 997, 1009
XapI RAATTY 2 cut(s) 811, 845
XceI RCATGY 1 cut(s) 1166
XhoI CTCGAG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 2 cut(s) 525, 765
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.