Rw4G036590

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000223
Physical Location & Seq
Forward (+)
63416709 .. 63421581
4873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G036590.1

Sequence Viewer

Length: 3378 bp
ATGATATATGGGGAAGCTCCGATTCTACTATATTCTGGAAATGATGAAAAACTATTAAAAAAAACTCTAGGAAGTAGTGGGATTATTGCTGGAAATATGGGTGGCTTTGGTGCGGATCAAGTTATTTTGGTCCGTGATGATTGTTCTCGAGAAGAAATCTCTAACTCCATTGGGAAGCAAGCTCTAGTTCTTACTATAGTGGAGTGCAAGGGCCTAGAATTTGAGGATGTACTCCTATACAAATTTTTTGGATCATCACCACTGAAAAATCAATGGAGGGTGCTATATGAATTCATGCAAGAACAAAATTTGCTGGACTCCACATTACCTGAGCGCTTTCCAAGTTTTGATGATGCCAAACACAGCATGTTATGCTCTGAACTAAAGCAGTTATATGTGGCTGTCTCTCGTACAAGACAGAGACTCTGGATATACGAGAATGTTGAAGAACTTTCCAACCCAATTTTTGACTATTGGAAAAGGCAACATCTTGTACAACTTAGAGAACTAGACGATTCACTTGCACAAATTATGCAAGTTGCAAGCACTTCAGGAGACTGGAGATCACGTGGCATCAAGCTATATCATGAGCATAACTACAAAATGGCCAGAATGTGCTTTCATAAAGCTGGTGATACATTTTGGGAAAGACGGTCTGAAGCTGCTGAGCTTAAAGTCAAGGCAGACCATATGCGCATTTCTAGTCCTGGAGAGGCAAATGCACTCCTTAGGAAAGCAGCTTCAATTTTTGAAGCTATAGGCCTGTTTGTACCTTCTGCCAGATGCTTTTATGATTTGGGCGAGTATGAACGAGCAGGTACAATTTATTTGTATAAATGTGGCGAACTGGAACTGGAAAATGCTGGGGAGTGCTTTTATCTTGCTGAAAATTATGTGCTTGCTGCAGATGTGTATGCTAGAGGAAACTTTTTCTTTCAGAGTATTTCTTCTTGTTTACGAGGAAATATATTTCACAGAGGTTTGGAATACATAAAATATTGGAGACAACATGCAAGAGACGAGTATGATCTGGCCAGACAAGCAGATGAGACTCATGAAATGGAATTGGAATTTCTTGAGCATTGCGCATTTCACTATTATGAGGGAAAAGATGACAGATCAAGGATGAAAGTTCTTAGAGATGGGATGCTTTCTACTCGAAAGTTTTTGAATGCTCAGATTTCATCAAGCACTTCAAAATATTTGTGGGAAGAAAAACTGCCTGGTGATCTTAAAAGGCCTTCAAACAAAAAATATGAGAAGCAGGTTTCTATTGATTCACTGGTCTACTTCTGGAATTCTTGGAAGGATACAGTTGTACACCTGTTTGAATATCTTGGATCGATAGATGTTAATGATTACATAAGTCATGGTGACTTCTTTCTGAATTATTTAGGGGTGTGGAAGCATTTTCATGATGGTCTAAATCCGCTCTATCTTTCACTCATTTATGATATTGACTGGGTGAGAAGTATTGACAAGAGATCTTTCCCAAGAAATGAGGAGTCGGTCCCCATTGATGTTCACCGGCTTGTCTTGGATGCTCAGAGTTATTGGAGTTCAGAGATGCTTTCTCTTGGCATTAAGGTTTTGGAGAAGCTTGAAGTGCTTTACAACTTCGCAATCAATAATTCTGATTCAGTGTTCTGCCAGAGCCGGTCTCTTATCCTTATATATGAGGTTGCAATATATCTTCTGGAATCCAAATTTCTGAAGATGACTCATTATCATGCTGAGACACTCCACAGATTTGTTACATTGTCGACTGAGAATTTTGTCTCTTACATATTTCCTTTAGATTGGATGAGGTCATCAAGAGAGGATATGATTTCTCTTAGGCAAATTGATTCTTGTAAGTGTTTACTGAATCAAGTCATAGTTGAGTACATCAGCTCGACAAACAGGCTTTCATCTGGGCAAATGGGATGCATTGCAATGATCATTCTTGGGTCTGGTAAGCTGGATAATGAACTTTATGAGAAGCTTATAAAAAATCTAGACTGCAACTCTCCATGGAAAAAGTTCATTGAGGATCTATGTGACAGTATTCAGTCAGAGCTGCCAGAAGGTTATAATAGTGAGCGACCTAAAAATGCCACAGTTCTTGAATATTCGGTGGCACCTGAGAGAGGTCCTTTACTTGGAAATATCAGTCAAGAACCGAGAGAGGTGTCTCTTTTGTGGAAGTTCCATGTTGCTTTGTTCAAAACTTATAGTCAGAATTGGAGTTTACATTGCTACAATATAACACCTGATTGCTTCTTATATCTTGTAGATTGCCTTCTGATTCGGATCTGTTGCTTTCAAGGTTATGCAATCACTACAAGATCTTGTTTCCTTGAGCGGCTGATATATAAGGAGGAACATAATCAAGTGATAATGGATGATGTTCGAATATCTTTTGAATGCATCCTTCAGTTTCTGACTGATGTTGTTCGGGAATTTCTTTTTAATAAGACGGATATGATTAAGTGGATAAAAAAGTGTACCAATAATAGTTGGAAGATGTATTACTCGCTACTGATGCAGAGACTGGTTTTTGTGTTATGTCTGCTTTATTTGAATTTTGGGATGGGCTTTGATATTCTCTTGGATTTGCTGAGGAGGAAGTACATCACTGACCAGTTACCAAAGGAGTTCTGCTATGTCCTTAGGGGAATTGCATCTTTACGTGATTCTGTTAGTAGACATGTTGATGTGCTAGCTCGAGCTTTTAAGAAGAGCGGTAATCCTTTGGTGGTTGCAAGTTTTGGGATTGATTGTTCAAGGTTCTTCTGTTCAGATGCCATTATCATCAACATGAAGGCTAACATATGCATGGCTGAAATAGTAAGATCTCTGTTTCCAAAACACTCTATGGTTCGTTCTTCACAAGGGCAAACATACACCACTGAAAACCTTAGGCATTGGAACAGAAAAAACTTCCCCGTGGATTTTGATCCGTTGTGGGAAATATTTAAAGGTTTTAAACCAGCAAAGGAAAGAGATCAGTGCAATATATTTTCAGATGCCTCAACAATCAAGTTGGATGTGGAGAAGATTATTCGGCTTTTGGCTGCTGCATGGTCTGGCCTTGATGACAAAGAAGAACGAAAGTTATCTAGAGAAGTGCTGAGCATGCTGGATGAATTGGTGCAACTCTATGCCGCATTAGATGGGAGCGAACGTGAAGTTGGAAACAATATGGCTACAGTTGCAGAACTTTCCAGGAGGTTGCAGTGGAGAAGTCAAAGATTTTTTTGGCCGGAAAAAATTCAGCCCATCTTCACTGAACTGTATATGGAGCACAATACGAAACTAGCTAGGAAGGCTCATGTACATGAGGCTGTTGCTAAGTCTGGCCACAACAATGAGGCAGGAAACGGTGATCGACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

1125

Amino Acids

131.01

Weight (kDa)

6.23

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26390 FvH4_1g26391 FvH4_2g00700 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_2g00900 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36180 FvH4_4g36210 FvH4_4g36221 FvH4_4g36250 FvH4_4g36250 FvH4_4g36250 FvH4_4g36280 FvH4_4g36280 FvH4_5g34990
malus_domestica MD09G1274800.v1.1 MD09G1274900.v1.1 MD09G1275500.v1.1 MD13G1010700.v1.1 MD16G1270700.v1.1
prunus_persica Prupe.1G087400_v2.0.a1 Prupe.1G134300_v2.0.a1 Prupe.1G215600_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G215900_v2.0.a1 Prupe.1G342300_v2.0.a1 Prupe.8G106200_v2.0.a1 Prupe.8G106200_v2.0.a1
pyrus_communis pycom09g18530 pycom09g18550 pycom09g18590 pycom13g00880 pycom16g24010
rosa_chinensis RchiOBHm_Chr2g0116911 RchiOBHm_Chr2g0116921 RchiOBHm_Chr3g0486161 RchiOBHm_Chr3g0486171 RchiOBHm_Chr4g0445931 RchiOBHm_Chr4g0445961 RchiOBHm_Chr4g0445971 RchiOBHm_Chr4g0445991 RchiOBHm_Chr4g0446001 RchiOBHm_Chr4g0446011 RchiOBHm_Chr4g0446031
rosa_laevigata RLG00000002343 RLG00000005696 RLG00000005698 RLG00000005699 RLG00000005701 RLG00000005703 RLG00000018313 RLG00000023096 RLG00000023099
rosa_multiflora Rmu_co8408865.1_g000001 Rmu_co8420123.1_g000001 Rmu_sc0000372.1_g000002 Rmu_sc0003001.1_g000002 Rmu_sc0003001.1_g000003 Rmu_sc0003001.1_g000006 Rmu_sc0003001.1_g000007 Rmu_sc0006315.1_g000012 Rmu_sc0007511.1_g000001 Rmu_sc0008543.1_g000001 Rmu_sc0009534.1_g000001 Rmu_sc0024967.1_g000001 Rmu_sc0036469.1_g000001 Rmu_ssc0000238.1_g000032
rosa_roxburghii Rroxscaffold_2G00126890 Rroxscaffold_5G00386350 Rroxscaffold_5G00386360 Rroxscaffold_5G00386370 Rroxscaffold_5G00386380 Rroxscaffold_5G00386400 Rroxscaffold_5G00386410 Rroxscaffold_5G00386430 Rroxscaffold_5G00386440 Rroxscaffold_6G00396020
rosa_rugosa Rorug03G0223800 Rorug03G0223800 Rorug03G0223800 Rorug04G0366100 Rorug04G0366200 Rorug04G0366300 Rorug04G0366400 Rorug04G0366500 Rorug04G0366600 Rorug04G0366600 Rorug04G0366700 Rorug04G0366700
rosa_samantha Rh1AG167300 Rh2AG265000 Rh2BG276500 Rh2DG272400 Rh2DG291200 Rh2DG291300 Rh2DG291400 Rh3AG273600 Rh3AG273700 Rh3BG308800 Rh3BG309000 Rh3CG307200 Rh3DG303500 Rh4AG427400 Rh4AG427700 Rh4AG427800 Rh4AG427900 Rh4AG428000 Rh4AG428300 Rh4AG428400 Rh4AG428500 Rh4AG428600 Rh4AG428700 Rh4BG426000 Rh4BG437600 Rh4BG437800 Rh4BG437900 Rh4BG438100 Rh4CG454300 Rh4CG454500 Rh4CG454600 Rh4CG454700 Rh4CG454800 Rh4CG454900 Rh4CG455200 Rh4CG455500 Rh4DG435700 Rh4DG435800 Rh4DG435900 Rh4DG436000 Rh4DG436100 Rh4DG436300 Rh4DG436600
rosa_wichuraiana Rw2G020880 Rw3G024250 Rw4G036590 Rw4G036600 Rw4G036620 Rw4G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1988, 2073
Acc16I TGCGCA 2 cut(s) 695, 1087
Acc36I ACCTGC 2 cut(s) 806, 1255
AccB1I GGYRCC 1 cut(s) 2119
AccBSI CCGCTC 3 cut(s) 1432, 2344, 2724
AccI GTMKAC 3 cut(s) 1287, 1763, 2686
AciI CCGC 5 cut(s) 113, 1430, 2344, 2724, 3147
AclWI GGATC 6 cut(s) 123, 259, 1348, 2040, 2300, 2933
AcoI YGGCCR 4 cut(s) 606, 1032, 3242, 3340
AcuI CTGAAG 4 cut(s) 534, 678, 1733, 2399
AcvI CACGTG 1 cut(s) 569
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 2129, 2141
AflIII ACRYGT 1 cut(s) 2689
AjnI CCWGG 3 cut(s) 706, 1222, 3206
AjuI GAANNNNNNNTTGG 2 cut(s) 3156, 3188
AloI GAACNNNNNNTCC 2 cut(s) 2746, 2778
Alw21I GWGCWC 1 cut(s) 3288
AlwI GGATC 6 cut(s) 123, 259, 1348, 2040, 2300, 2933
AlwNI CAGNNNCTG 2 cut(s) 2422, 2533
Ama87I CYCGRG 2 cut(s) 147, 2706
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 8 cut(s) 211, 606, 760, 1032, 1238, 3070, 3242, 3340
ApeKI GCWGC 6 cut(s) 662, 737, 902, 2059, 3056, 3059
Asp700I GAANNNNTTC 2 cut(s) 2021, 3252
AspLEI GCGC 3 cut(s) 336, 696, 1088
AspS9I GGNCC 4 cut(s) 130, 211, 1510, 2132
AsuHPI GGTGA 7 cut(s) 249, 644, 1238, 1385, 1477, 1517, 3377
AsuII TTCGAA 1 cut(s) 2392
AsuNHI GCTAGC 1 cut(s) 2701
AvaI CYCGRG 2 cut(s) 147, 2706
AvaII GGWCC 3 cut(s) 130, 1510, 2132
AxyI CCTNAGG 3 cut(s) 728, 2651, 2900
BaeI ACNNNNGTAYC 2 cut(s) 1302, 1335
BalI TGGCCA 3 cut(s) 608, 1034, 3342
BanI GGYRCC 1 cut(s) 2119
BarI GAAGNNNNNNTAC 4 cut(s) 2265, 2297, 2495, 2527
BbrPI CACGTG 1 cut(s) 569
Bbv12I GWGCWC 1 cut(s) 3288
BbvCI CCTCAGC 1 cut(s) 2600
BbvI GCAGC 6 cut(s) 649, 749, 889, 2046, 3043, 3046
BccI CCATC 5 cut(s) 1136, 1412, 2566, 3149, 3269
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 3 cut(s) 708, 1224, 3208
BciVI GTATCC 1 cut(s) 1303
BclI TGATCA 1 cut(s) 1938
BfmI CTRYAG 4 cut(s) 195, 756, 903, 3189
BfoI RGCGCY 1 cut(s) 337
BfuAI ACCTGC 2 cut(s) 806, 1255
BfuI GTATCC 1 cut(s) 1303
BglII AGATCT 3 cut(s) 1484, 2327, 2834
BisI GCNGC 8 cut(s) 663, 738, 903, 2060, 2345, 3057, 3060, 3147
BlpI GCTNAGC 2 cut(s) 666, 3113
BlsI GCNGC 8 cut(s) 664, 739, 904, 2061, 2346, 3058, 3061, 3148
Bme1390I CCNGG 3 cut(s) 708, 1224, 3208
Bme18I GGWCC 3 cut(s) 130, 1510, 2132
BmeT110I CYCGRG 2 cut(s) 147, 2706
BmgT120I GGNCC 4 cut(s) 130, 211, 1510, 2132
BmiI GGNNCC 2 cut(s) 1512, 2121
BmrFI CCNGG 3 cut(s) 708, 1224, 3208
BmrI ACTGGG 1 cut(s) 1471
BmtI GCTAGC 1 cut(s) 2705
BmuI ACTGGG 1 cut(s) 1471
BplI GAGNNNNNCTC 2 cut(s) 1645, 1677
BpmI CTGGAG 2 cut(s) 580, 729
Bpu10I CCTNAGC 2 cut(s) 330, 2600
Bpu1102I GCTNAGC 2 cut(s) 666, 3113
Bpu14I TTCGAA 1 cut(s) 2392
BpuEI CTTGAG 2 cut(s) 1097, 2360
Bsa29I ATCGAT 1 cut(s) 1343
BsaAI YACGTR 2 cut(s) 569, 2672
BsaBI GATNNNNATC 2 cut(s) 2291, 2937
BsaI GGTCTC 1 cut(s) 1665
BsaJI CCNNGG 2 cut(s) 2012, 2928
BsaXI ACNNNNNCTCC 4 cut(s) 553, 583, 3151, 3181
Bsc4I CCNNNNNNNGG 2 cut(s) 2129, 2141
Bse118I RCCGGY 2 cut(s) 1527, 1656
Bse1I ACTGG 7 cut(s) 563, 852, 858, 1287, 1466, 2538, 2623
Bse21I CCTNAGG 3 cut(s) 728, 2651, 2900
Bse3DI GCAATG 4 cut(s) 1081, 1929, 1941, 2233
Bse8I GATNNNNATC 2 cut(s) 2291, 2937
BseBI CCWGG 3 cut(s) 708, 1224, 3208
BseCI ATCGAT 1 cut(s) 1343
BseDI CCNNGG 2 cut(s) 2012, 2928
BseJI GATNNNNATC 2 cut(s) 2291, 2937
BseLI CCNNNNNNNGG 2 cut(s) 2129, 2141
BseMI GCAATG 4 cut(s) 1081, 1929, 1941, 2233
BseMII CTCAG 9 cut(s) 321, 657, 1190, 1559, 1725, 1758, 2115, 2591, 3104
BseNI ACTGG 7 cut(s) 563, 852, 858, 1287, 1466, 2538, 2623
BseRI GAGGAG 2 cut(s) 1517, 2617
BseXI GCAGC 6 cut(s) 649, 749, 889, 2046, 3043, 3046
BseYI CCCAGC 1 cut(s) 863
BshFI GGCC 8 cut(s) 213, 608, 762, 1034, 1240, 3072, 3244, 3342
BshNI GGYRCC 1 cut(s) 2119
BshVI ATCGAT 1 cut(s) 1343
BsiHKAI GWGCWC 1 cut(s) 3288
BsiHKCI CYCGRG 2 cut(s) 147, 2706
BsiSI CCGG 3 cut(s) 1528, 1657, 3245
BslFI GGGAC 1 cut(s) 1496
BslI CCNNNNNNNGG 2 cut(s) 2129, 2141
BsmBI CGTCTC 1 cut(s) 1011
BsmFI GGGAC 1 cut(s) 1496
BsmI GAATGC 2 cut(s) 1177, 2411
BsnI GGCC 8 cut(s) 213, 608, 762, 1034, 1240, 3072, 3244, 3342
Bso31I GGTCTC 1 cut(s) 1665
BsoBI CYCGRG 2 cut(s) 147, 2706
Bsp119I TTCGAA 1 cut(s) 2392
Bsp1286I GDGCHC 1 cut(s) 3288
Bsp1407I TGTACA 3 cut(s) 493, 1318, 3316
Bsp1720I GCTNAGC 2 cut(s) 666, 3113
Bsp19I CCATGG 1 cut(s) 2012
BspACI CCGC 5 cut(s) 113, 1430, 2344, 2724, 3147
BspANI GGCC 8 cut(s) 213, 608, 762, 1034, 1240, 3072, 3244, 3342
BspCNI CTCAG 9 cut(s) 322, 658, 1189, 1558, 1726, 1759, 2116, 2592, 3105
BspDI ATCGAT 1 cut(s) 1343
BspHI TCATGA 3 cut(s) 586, 1054, 1414
BspLI GGNNCC 2 cut(s) 1512, 2121
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 2 cut(s) 806, 1255
BspOI GCTAGC 1 cut(s) 2705
BspPI GGATC 6 cut(s) 123, 259, 1348, 2040, 2300, 2933
BspQI GCTCTTC 1 cut(s) 2714
BspT104I TTCGAA 1 cut(s) 2392
BspT107I GGYRCC 1 cut(s) 2119
BspTNI GGTCTC 1 cut(s) 1665
BsrBI CCGCTC 3 cut(s) 1432, 2344, 2724
BsrDI GCAATG 4 cut(s) 1081, 1929, 1941, 2233
BsrFI RCCGGY 2 cut(s) 1527, 1656
BsrGI TGTACA 3 cut(s) 493, 1318, 3316
BsrI ACTGG 7 cut(s) 563, 852, 858, 1287, 1466, 2538, 2623
BssAI RCCGGY 2 cut(s) 1527, 1656
BssECI CCNNGG 2 cut(s) 2012, 2928
BssT1I CCWWGG 1 cut(s) 2012
Bst2UI CCWGG 3 cut(s) 708, 1224, 3208
Bst4CI ACNGT 8 cut(s) 654, 1315, 2045, 2101, 3193, 3276, 3365, 3375
Bst6I CTCTTC 1 cut(s) 2714
BstAPI GCANNNNNTGC 1 cut(s) 372
BstAUI TGTACA 3 cut(s) 493, 1318, 3316
BstBAI YACGTR 2 cut(s) 569, 2672
BstBI TTCGAA 1 cut(s) 2392
BstC8I GCNNGC 5 cut(s) 180, 544, 900, 2703, 3119
BstDSI CCRYGG 2 cut(s) 2012, 2928
BstENI CCTNNNNNAGG 1 cut(s) 2127
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 3 cut(s) 336, 696, 1088
BstMWI GCNNNNNNNGC 7 cut(s) 372, 1040, 1606, 2524, 3118, 3194, 3308
BstNI CCWGG 3 cut(s) 708, 1224, 3208
BstNSI RCATGY 4 cut(s) 370, 1013, 2693, 3121
BstSCI CCNGG 3 cut(s) 706, 1222, 3206
BstSFI CTRYAG 4 cut(s) 195, 756, 903, 3189
BstV1I GCAGC 6 cut(s) 649, 749, 889, 2046, 3043, 3046
BstX2I RGATCY 5 cut(s) 1484, 2032, 2292, 2327, 2834
BstYI RGATCY 5 cut(s) 1484, 2032, 2292, 2327, 2834
Bsu15I ATCGAT 1 cut(s) 1343
Bsu36I CCTNAGG 3 cut(s) 728, 2651, 2900
BsuI GTATCC 1 cut(s) 1303
BsuRI GGCC 8 cut(s) 213, 608, 762, 1034, 1240, 3072, 3244, 3342
BsuTUI ATCGAT 1 cut(s) 1343
BtgI CCRYGG 2 cut(s) 2012, 2928
BtsI GCAGTG 1 cut(s) 3224
BtsIMutI CAGTG 8 cut(s) 260, 1280, 1647, 2616, 2889, 2996, 3224, 3267
BveI ACCTGC 2 cut(s) 806, 1255
Cac8I GCNNGC 5 cut(s) 180, 544, 900, 2703, 3119
CaiI CAGNNNCTG 2 cut(s) 2422, 2533
CciI TCATGA 3 cut(s) 586, 1054, 1414
CfoI GCGC 3 cut(s) 336, 696, 1088
Cfr10I RCCGGY 2 cut(s) 1527, 1656
Cfr13I GGNCC 4 cut(s) 130, 211, 1510, 2132
ClaI ATCGAT 1 cut(s) 1343
CspCI CAANNNNNGTGG 2 cut(s) 2086, 2121
DraI TTTAAA 2 cut(s) 2959, 2968
EaeI YGGCCR 4 cut(s) 606, 1032, 3242, 3340
Eam1104I CTCTTC 1 cut(s) 2714
EarI CTCTTC 1 cut(s) 2714
Eco130I CCWWGG 1 cut(s) 2012
Eco147I AGGCCT 2 cut(s) 762, 1240
Eco31I GGTCTC 1 cut(s) 1665
Eco47I GGWCC 3 cut(s) 130, 1510, 2132
Eco47III AGCGCT 1 cut(s) 335
Eco57I CTGAAG 4 cut(s) 534, 678, 1733, 2399
Eco72I CACGTG 1 cut(s) 569
Eco81I CCTNAGG 3 cut(s) 728, 2651, 2900
Eco88I CYCGRG 2 cut(s) 147, 2706
EcoNI CCTNNNNNAGG 1 cut(s) 2127
EcoO109I RGGNCCY 2 cut(s) 211, 2132
EcoRI GAATTC 2 cut(s) 290, 1297
EcoRII CCWGG 3 cut(s) 706, 1222, 3206
EcoT14I CCWWGG 1 cut(s) 2012
EcoT22I ATGCAT 3 cut(s) 1931, 2411, 2819
ErhI CCWWGG 1 cut(s) 2012
Esp3I CGTCTC 1 cut(s) 1011
FaqI GGGAC 1 cut(s) 1496
FauNDI CATATG 2 cut(s) 690, 2813
FbaI TGATCA 1 cut(s) 1938
FblI GTMKAC 3 cut(s) 1287, 1763, 2686
Fnu4HI GCNGC 8 cut(s) 663, 738, 903, 2060, 2345, 3057, 3060, 3147
Fsp4HI GCNGC 8 cut(s) 663, 738, 903, 2060, 2345, 3057, 3060, 3147
FspAI RTGCGCAY 1 cut(s) 695
FspI TGCGCA 2 cut(s) 695, 1087
GlaI GCGC 3 cut(s) 335, 695, 1087
GluI GCNGC 8 cut(s) 663, 738, 903, 2060, 2345, 3057, 3060, 3147
GsaI CCCAGC 1 cut(s) 867
GsuI CTGGAG 2 cut(s) 580, 729
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 8 cut(s) 213, 608, 762, 1034, 1240, 3072, 3244, 3342
HapII CCGG 3 cut(s) 1528, 1657, 3245
HhaI GCGC 3 cut(s) 336, 696, 1088
Hin6I GCGC 3 cut(s) 334, 694, 1086
HinP1I GCGC 3 cut(s) 334, 694, 1086
HincII GTYRAC 1 cut(s) 1764
HindII GTYRAC 1 cut(s) 1764
HindIII AAGCTT 2 cut(s) 1598, 1982
HpaII CCGG 3 cut(s) 1528, 1657, 3245
HphI GGTGA 7 cut(s) 249, 644, 1238, 1385, 1477, 1517, 3377
Hpy166II GTNNAC 9 cut(s) 956, 1288, 1321, 1525, 1764, 1862, 2231, 2487, 2687
Hpy8I GTNNAC 9 cut(s) 956, 1288, 1321, 1525, 1764, 1862, 2231, 2487, 2687
HpyAV CCTTC 8 cut(s) 783, 1251, 1300, 2060, 2291, 2423, 2797, 3301
HpyCH4III ACNGT 8 cut(s) 654, 1315, 2045, 2101, 3193, 3276, 3365, 3375
HpyCH4IV ACGT 3 cut(s) 568, 2671, 3166
HpyF10VI GCNNNNNNNGC 7 cut(s) 372, 1040, 1606, 2524, 3118, 3194, 3308
HpySE526I ACGT 3 cut(s) 568, 2671, 3166
HspAI GCGC 3 cut(s) 334, 694, 1086
Ksp22I TGATCA 1 cut(s) 1938
LguI GCTCTTC 1 cut(s) 2714
LmnI GCTCC 3 cut(s) 22, 3159, 3283
Lsp1109I GCAGC 6 cut(s) 649, 749, 889, 2046, 3043, 3046
MaeII ACGT 3 cut(s) 568, 2671, 3166
MaeIII GTNAC 4 cut(s) 1373, 1753, 2039, 2625
MbiI CCGCTC 3 cut(s) 1432, 2344, 2724
MflI RGATCY 5 cut(s) 1484, 2032, 2292, 2327, 2834
MhlI GDGCHC 1 cut(s) 3288
MlsI TGGCCA 3 cut(s) 608, 1034, 3342
MluNI TGGCCA 3 cut(s) 608, 1034, 3342
MlyI GAGTC 5 cut(s) 311, 417, 1045, 1514, 1714
MmeI TCCRAC 4 cut(s) 480, 2480, 3006, 3154
Mox20I TGGCCA 3 cut(s) 608, 1034, 3342
Mph1103I ATGCAT 3 cut(s) 1931, 2411, 2819
MroXI GAANNNNTTC 2 cut(s) 2021, 3252
MscI TGGCCA 3 cut(s) 608, 1034, 3342
MslI CAYNNNNRTG 9 cut(s) 1098, 1413, 1728, 1934, 2694, 2798, 2816, 3318, 3348
Msp20I TGGCCA 3 cut(s) 608, 1034, 3342
MspI CCGG 3 cut(s) 1528, 1657, 3245
MspR9I CCNGG 3 cut(s) 708, 1224, 3208
Mva1269I GAATGC 2 cut(s) 1177, 2411
MvaI CCWGG 3 cut(s) 708, 1224, 3208
MwoI GCNNNNNNNGC 7 cut(s) 372, 1040, 1606, 2524, 3118, 3194, 3308
NcoI CCATGG 1 cut(s) 2012
NdeI CATATG 2 cut(s) 690, 2813
NheI GCTAGC 1 cut(s) 2701
NlaIV GGNNCC 2 cut(s) 1512, 2121
NmuCI GTSAC 2 cut(s) 1373, 2039
NsbI TGCGCA 2 cut(s) 695, 1087
NsiI ATGCAT 3 cut(s) 1931, 2411, 2819
NspI RCATGY 4 cut(s) 370, 1013, 2693, 3121
NspV TTCGAA 1 cut(s) 2392
PaeI GCATGC 1 cut(s) 3121
PaeR7I CTCGAG 2 cut(s) 147, 2706
PagI TCATGA 3 cut(s) 586, 1054, 1414
PceI AGGCCT 2 cut(s) 762, 1240
PciI ACATGT 1 cut(s) 2689
PciSI GCTCTTC 1 cut(s) 2714
PctI GAATGC 2 cut(s) 1177, 2411
PdmI GAANNNNTTC 2 cut(s) 2021, 3252
PfeI GAWTC 9 cut(s) 22, 515, 1277, 1637, 1700, 1847, 1867, 2287, 2675
PfoI TCCNGGA 2 cut(s) 706, 3206
PkrI GCNGC 8 cut(s) 664, 739, 904, 2061, 2346, 3058, 3061, 3148
PleI GAGTC 5 cut(s) 311, 417, 1045, 1513, 1714
PmaCI CACGTG 1 cut(s) 569
PmlI CACGTG 1 cut(s) 569
PpsI GAGTC 5 cut(s) 311, 417, 1045, 1513, 1714
Ppu21I YACGTR 2 cut(s) 569, 2672
PpuMI RGGWCCY 1 cut(s) 2132
PscI ACATGT 1 cut(s) 2689
PsiI TTATAA 2 cut(s) 1988, 2073
Psp5II RGGWCCY 1 cut(s) 2132
Psp6I CCWGG 3 cut(s) 706, 1222, 3206
PspCI CACGTG 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 863
PspGI CCWGG 3 cut(s) 706, 1222, 3206
PspN4I GGNNCC 2 cut(s) 1512, 2121
PspPI GGNCC 4 cut(s) 130, 211, 1510, 2132
PspPPI RGGWCCY 1 cut(s) 2132
PspXI VCTCGAGB 1 cut(s) 2706
PstI CTGCAG 1 cut(s) 907
PstNI CAGNNNCTG 2 cut(s) 2422, 2533
PsuI RGATCY 5 cut(s) 1484, 2032, 2292, 2327, 2834
RseI CAYNNNNRTG 9 cut(s) 1098, 1413, 1728, 1934, 2694, 2798, 2816, 3318, 3348
SalI GTCGAC 1 cut(s) 1762
SapI GCTCTTC 1 cut(s) 2714
SatI GCNGC 8 cut(s) 663, 738, 903, 2060, 2345, 3057, 3060, 3147
Sau96I GGNCC 4 cut(s) 130, 211, 1510, 2132
SchI GAGTC 5 cut(s) 311, 417, 1045, 1514, 1714
ScrFI CCNGG 3 cut(s) 708, 1224, 3208
SduI GDGCHC 1 cut(s) 3288
SfcI CTRYAG 4 cut(s) 195, 756, 903, 3189
Sfr274I CTCGAG 2 cut(s) 147, 2706
SfuI TTCGAA 1 cut(s) 2392
SinI GGWCC 3 cut(s) 130, 1510, 2132
SlaI CTCGAG 2 cut(s) 147, 2706
SmiMI CAYNNNNRTG 9 cut(s) 1098, 1413, 1728, 1934, 2694, 2798, 2816, 3318, 3348
SmlI CTYRAG 4 cut(s) 147, 1076, 2339, 2706
SmoI CTYRAG 4 cut(s) 147, 1076, 2339, 2706
SphI GCATGC 1 cut(s) 3121
SseBI AGGCCT 2 cut(s) 762, 1240
SsiI CCGC 5 cut(s) 113, 1430, 2344, 2724, 3147
SspI AATATT 4 cut(s) 998, 1202, 2111, 2955
StuI AGGCCT 2 cut(s) 762, 1240
StyD4I CCNGG 3 cut(s) 706, 1222, 3206
StyI CCWWGG 1 cut(s) 2012
TaaI ACNGT 8 cut(s) 654, 1315, 2045, 2101, 3193, 3276, 3365, 3375
TaiI ACGT 3 cut(s) 571, 2674, 3169
TaqI TCGA 8 cut(s) 148, 1159, 1343, 1763, 1895, 2392, 2707, 3370
TaqII GACCGA 1 cut(s) 1498
TatI WGTACW 6 cut(s) 229, 493, 1318, 1884, 2610, 3316
TauI GCSGC 2 cut(s) 2347, 3149
TfiI GAWTC 9 cut(s) 22, 515, 1277, 1637, 1700, 1847, 1867, 2287, 2675
TscAI CASTG 8 cut(s) 267, 1287, 1647, 2623, 2896, 2996, 3224, 3274
TseFI GTSAC 2 cut(s) 1373, 2039
TseI GCWGC 6 cut(s) 662, 737, 902, 2059, 3056, 3059
Tsp45I GTSAC 2 cut(s) 1373, 2039
TspGWI ACGGA 3 cut(s) 122, 2474, 2931
TspRI CASTG 8 cut(s) 267, 1287, 1647, 2623, 2896, 2996, 3224, 3274
VpaK11BI GGWCC 3 cut(s) 130, 1510, 2132
XagI CCTNNNNNAGG 1 cut(s) 2127
XbaI TCTAGA 2 cut(s) 1996, 3101
XceI RCATGY 4 cut(s) 370, 1013, 2693, 3121
XhoI CTCGAG 2 cut(s) 147, 2706
XmiI GTMKAC 3 cut(s) 1287, 1763, 2686
XmnI GAANNNNTTC 2 cut(s) 2021, 3252
Zsp2I ATGCAT 3 cut(s) 1931, 2411, 2819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.