FvH4_3g15160

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000096
Physical Location & Seq
Forward (+)
9418429 .. 9420429
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15160.t1

Sequence Viewer

Length: 858 bp
ATGTTAGATCAGCTTGGGTGCTACACAGATGGGGAGCTTTATGATGTTTGCAATAACATTTCTATTGTGCGAGCAGCTGCGACTTGCAACTTCTCTGATAAGAATAAGCTAGGACAAGGCGGTTTTGGACCTGTTTATAAGGGGAAATTTGTGACCGGACAAGAAATAGCAGTGAAGAGACTTTCAAAACGTTCAGCGCAGGGAATATCAGAATTTAAAAATAAGTTGATAATTATATATGGACTCCAGCATACAAATCTTGTTCAGCTCTTTGGATTTTGCCTTCATGGTGAAGAGAGGATGTTGATATATGAATTCAACTGGATCCCAAGTTCCCAACAGTTAGATTGGGATAGCCGTTTCCGCATAATTGAAGGAATTGCTCAAGGTTTGCTTTACTTGCACAAATATTCCAGAACGAGAATAATTCATAGAGATCTGAAAGCAAGTAATGTTCTACTTGATGAAAGGATGAACCCCAAAATTTCTGATTTTGGAATGGCGAGGATTTTTGCCAATGACGAAGAAGAAGCAAACACTATGAAGATTGTCAGGACACGTGGTTATATGTCCCCTGAGTATGTTATGGTGGGGAATTTTTCCACAAAATCTGATGTCTATAGCTTTGGAGTGTTGATGCTTGAAATCCTAAGTGGTAGGAAAAACAATAGCTTCTACAATGATGATCGCTTCATCAATTTAGTCGGCTATGCATGGGCGTTATGGAGAGAAGGTGCAGGACTAGGACTAATGGATCCAACAATTGGTGATTCATGTGACAAAGATCAGATGTTGAGGTGCATCCATGTTGGTCTGCTATGCGTGGAGGAACAGCAGCTGATAGACCGACGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

286

Amino Acids

32.57

Weight (kDa)

6.95

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 32 - 221 4.4e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 34 - 224 3.9e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 764
AciI CCGC 2 cut(s) 120, 364
AclI AACGTT 1 cut(s) 190
AclWI GGATC 4 cut(s) 319, 332, 749, 762
AcsI RAATTY 5 cut(s) 146, 212, 314, 483, 595
AcvI CACGTG 1 cut(s) 560
AfiI CCNNNNNNNGG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 4 cut(s) 186, 319, 374, 644
AloI GAACNNNNNNTCC 2 cut(s) 316, 348
AluBI AGCT 8 cut(s) 13, 37, 77, 109, 268, 624, 672, 838
AluI AGCT 8 cut(s) 13, 37, 77, 109, 268, 624, 672, 838
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 4 cut(s) 319, 332, 749, 762
AlwNI CAGNNNCTG 1 cut(s) 838
ApeKI GCWGC 3 cut(s) 74, 77, 835
ApoI RAATTY 5 cut(s) 146, 212, 314, 483, 595
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 302, 779
AvaII GGWCC 1 cut(s) 128
BamHI GGATCC 2 cut(s) 324, 754
BbrPI CACGTG 1 cut(s) 560
BbvI GCAGC 3 cut(s) 64, 86, 847
BccI CCATC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 2 cut(s) 110, 743
BfmI CTRYAG 1 cut(s) 619
BglII AGATCT 1 cut(s) 436
BisI GCNGC 3 cut(s) 75, 78, 836
BlsI GCNGC 3 cut(s) 76, 79, 837
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 326, 756
BmsI GCATC 2 cut(s) 627, 810
BpmI CTGGAG 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 369
BsaAI YACGTR 1 cut(s) 560
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse1I ACTGG 1 cut(s) 326
BseGI GGATG 3 cut(s) 306, 477, 801
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 64, 86, 847
BsgI GTGCAG 1 cut(s) 756
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 556
Bsp143I GATC 6 cut(s) 7, 324, 436, 685, 754, 784
BspACI CCGC 2 cut(s) 120, 364
BspCNI CTCAG 1 cut(s) 568
BspLI GGNNCC 2 cut(s) 326, 756
BspPI GGATC 4 cut(s) 319, 332, 749, 762
BsrI ACTGG 1 cut(s) 326
BssMI GATC 6 cut(s) 7, 324, 436, 685, 754, 784
Bst4CI ACNGT 2 cut(s) 342, 852
Bst6I CTCTTC 2 cut(s) 170, 288
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 576, 650
BstF5I GGATG 3 cut(s) 306, 477, 801
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 6 cut(s) 10, 327, 439, 688, 757, 787
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 6 cut(s) 7, 324, 436, 685, 754, 784
BstMWI GCNNNNNNNGC 2 cut(s) 363, 400
BstSFI CTRYAG 1 cut(s) 619
BstV1I GCAGC 3 cut(s) 64, 86, 847
BstX2I RGATCY 3 cut(s) 324, 436, 754
BstYI RGATCY 3 cut(s) 324, 436, 754
BtsCI GGATG 3 cut(s) 306, 477, 801
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 838
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 4 cut(s) 287, 714, 774, 806
DdeI CTNAG 2 cut(s) 576, 650
DpnI GATC 6 cut(s) 9, 326, 438, 687, 756, 786
DpnII GATC 6 cut(s) 7, 324, 436, 685, 754, 784
DraI TTTAAA 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 170, 288
EarI CTCTTC 2 cut(s) 170, 288
Eco47I GGWCC 1 cut(s) 128
Eco72I CACGTG 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 715
FaeI CATG 4 cut(s) 290, 717, 777, 809
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 1 cut(s) 556
FatI CATG 4 cut(s) 286, 713, 773, 805
Fnu4HI GCNGC 3 cut(s) 75, 78, 836
FokI GGATG 3 cut(s) 313, 484, 788
Fsp4HI GCNGC 3 cut(s) 75, 78, 836
FspBI CTAG 2 cut(s) 110, 743
GlaI GCGC 1 cut(s) 198
GluI GCNGC 3 cut(s) 75, 78, 836
GsuI CTGGAG 1 cut(s) 230
HapII CCGG 1 cut(s) 156
HhaI GCGC 1 cut(s) 199
Hin1II CATG 4 cut(s) 290, 717, 777, 809
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 2 cut(s) 243, 770
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 302, 779
Hpy188I TCNGA 6 cut(s) 97, 211, 441, 490, 613, 789
Hpy188III TCNNGA 2 cut(s) 414, 553
Hpy99I CGWCG 1 cut(s) 852
HpyAV CCTTC 3 cut(s) 293, 368, 725
HpyCH4III ACNGT 2 cut(s) 342, 852
HpyCH4IV ACGT 2 cut(s) 190, 559
HpyCH4V TGCA 6 cut(s) 51, 87, 403, 713, 737, 801
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 400
HpyF3I CTNAG 2 cut(s) 576, 650
HpySE526I ACGT 2 cut(s) 190, 559
Hsp92II CATG 4 cut(s) 290, 717, 777, 809
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 6 cut(s) 7, 324, 436, 685, 754, 784
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 9 cut(s) 144, 169, 185, 260, 307, 427, 538, 588, 723
Lsp1109I GCAGC 3 cut(s) 64, 86, 847
LweI GCATC 2 cut(s) 627, 810
MaeI CTAG 2 cut(s) 110, 743
MaeII ACGT 2 cut(s) 190, 559
MaeIII GTNAC 2 cut(s) 151, 776
MalI GATC 6 cut(s) 9, 326, 438, 687, 756, 786
MboI GATC 6 cut(s) 7, 324, 436, 685, 754, 784
MboII GAAGA 5 cut(s) 187, 305, 536, 539, 556
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 3 cut(s) 324, 436, 754
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 782
MnlI CCTC 4 cut(s) 291, 498, 789, 820
Mph1103I ATGCAT 1 cut(s) 715
MseI TTAA 1 cut(s) 216
MspA1I CMGCKG 2 cut(s) 77, 838
MspI CCGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 762
MwoI GCNNNNNNNGC 2 cut(s) 363, 400
NdeII GATC 6 cut(s) 7, 324, 436, 685, 754, 784
NlaIII CATG 4 cut(s) 290, 717, 777, 809
NlaIV GGNNCC 2 cut(s) 326, 756
NmuCI GTSAC 2 cut(s) 151, 776
NsiI ATGCAT 1 cut(s) 715
PfeI GAWTC 1 cut(s) 770
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 3 cut(s) 76, 79, 837
PleI GAGTC 1 cut(s) 237
PmaCI CACGTG 1 cut(s) 560
PmlI CACGTG 1 cut(s) 560
PpsI GAGTC 1 cut(s) 237
Ppu21I YACGTR 1 cut(s) 560
PsiI TTATAA 1 cut(s) 138
Psp1406I AACGTT 1 cut(s) 190
PspCI CACGTG 1 cut(s) 560
PspN4I GGNNCC 2 cut(s) 326, 756
PspPI GGNCC 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 838
PsuI RGATCY 3 cut(s) 324, 436, 754
PvuII CAGCTG 2 cut(s) 77, 838
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 75, 78, 836
Sau3AI GATC 6 cut(s) 7, 324, 436, 685, 754, 784
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 237
SfaNI GCATC 2 cut(s) 627, 810
SfcI CTRYAG 1 cut(s) 619
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
SsiI CCGC 2 cut(s) 120, 364
SspI AATATT 1 cut(s) 410
SspMI CTAG 2 cut(s) 110, 743
TaaI ACNGT 2 cut(s) 342, 852
TaiI ACGT 2 cut(s) 193, 562
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 2 cut(s) 151, 776
TseI GCWGC 3 cut(s) 74, 77, 835
Tsp45I GTSAC 2 cut(s) 151, 776
TspDTI ATGAA 8 cut(s) 275, 327, 419, 480, 488, 557, 682, 762
TspRI CASTG 1 cut(s) 177
Van91I CCANNNNNTGG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 5 cut(s) 146, 212, 314, 483, 595
XspI CTAG 2 cut(s) 110, 743
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.