pycom05g20880

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
23602099 .. 23603316
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20880.1

Sequence Viewer

Length: 720 bp
ATGCCAAACAAAAGTTTGGACAACTTCTTATTTGATTCTACCAGAGCTCTACTAGATTGGAAGACGCGTTTCAGTATAATTGAAGGAATAGCTCAAGGATTGCTTTACTTGCACAAATACTCGAGAATGAGGGTAATTCATAGAGATTTGAAACCTAGTAACATATTACTTGATGAAAATATGAACCCCAAAATATCAGATTTTGGTATGGCAAGGATTTTCAACTATAATGAATTGGAAGCAAATACTGGTAGGATTGTTGGGACACGTGGTTACATGTCTCCCGAATACGCCATGGAGGGGATATTTTCAATAAAATCTGATGTCTTCAGTTTTGGGGTGTTAATGCTCGAAATCATAAGTGGCAGGAAAAACAACAGCTTCTACAATGATGAGCGTGTGCTAAATTTAGTAGGATATACATGGGAGCTATGGAAAGAAGGCGCAGGGATAGAACTAATGGATCCAACACTAAAGGATTCCTGTATTCAGGATCAATTTCTTAGATGCATCCATGTCGGTCTACTATGCGTGGAGGAAAATGCAGGTGAACGGCCGACCATCTCCAATGTGATATCTATGTTGACAAATGAAAGTGTGGCATTACCTATGCCAACAAAGCCAGCATTTTTCACAGAAAGAAATCATGTGGCCGGTGGAAAGGAGCCAGAAGATATGTCGATAAATTGTTTGTCCAATTCCGAAATGGTTGCCCGTTGA

Protein Analysis

240

Amino Acids

27.16

Weight (kDa)

5.34

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 138 8e-27 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 3 - 127 6.9e-27 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 536
Acc36I ACCTGC 1 cut(s) 536
AccI GTMKAC 1 cut(s) 523
AccII CGCG 1 cut(s) 67
AclWI GGATC 3 cut(s) 458, 471, 501
AcoI YGGCCR 2 cut(s) 554, 651
AcsI RAATTY 1 cut(s) 406
AcuI CTGAAG 1 cut(s) 313
AcvI CACGTG 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 300
AflIII ACRYGT 3 cut(s) 65, 266, 276
AgsI TTSAA 4 cut(s) 83, 151, 223, 312
AluBI AGCT 4 cut(s) 47, 92, 381, 430
AluI AGCT 4 cut(s) 47, 92, 381, 430
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 3 cut(s) 458, 471, 501
Ama87I CYCGRG 1 cut(s) 121
AoxI GGCC 2 cut(s) 554, 651
ApoI RAATTY 1 cut(s) 406
AspLEI GCGC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 121
BamHI GGATCC 1 cut(s) 463
BanII GRGCYC 1 cut(s) 49
BbrPI CACGTG 1 cut(s) 269
BbsI GAAGAC 2 cut(s) 68, 319
Bbv12I GWGCWC 1 cut(s) 49
BccI CCATC 1 cut(s) 569
BceAI ACGGC 1 cut(s) 569
BcgI CGANNNNNNTGC 3 cut(s) 499, 533, 692
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 2 cut(s) 53, 156
BfuAI ACCTGC 1 cut(s) 536
BmeT110I CYCGRG 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 465, 666
BmsI GCATC 2 cut(s) 497, 519
BpiI GAAGAC 2 cut(s) 68, 319
BpuEI CTTGAG 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 253
BseX3I CGGCCG 1 cut(s) 554
Bsh1236I CGCG 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 557
BshFI GGCC 2 cut(s) 556, 653
BsiEI CGRYCG 1 cut(s) 557
BsiHKAI GWGCWC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 654
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 2 cut(s) 556, 653
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 463, 493
Bsp19I CCATGG 1 cut(s) 294
BspANI GGCC 2 cut(s) 556, 653
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 465, 666
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 3 cut(s) 458, 471, 501
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 463, 493
BssT1I CCWWGG 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 1 cut(s) 503
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 510
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 2 cut(s) 466, 496
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 463, 493
BstMCI CGRYCG 1 cut(s) 557
BstMWI GCNNNNNNNGC 2 cut(s) 109, 619
BstNSI RCATGY 1 cut(s) 280
BstUI CGCG 1 cut(s) 67
BstV2I GAAGAC 2 cut(s) 68, 319
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BstZI CGGCCG 1 cut(s) 554
BsuRI GGCC 2 cut(s) 556, 653
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 510
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 1 cut(s) 624
CfoI GCGC 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 653
CseI GACGC 1 cut(s) 73
CviAII CATG 5 cut(s) 277, 295, 423, 515, 647
CviJI RGCY 8 cut(s) 47, 92, 381, 430, 556, 622, 653, 667
CviKI_1 RGCY 8 cut(s) 47, 92, 381, 430, 556, 622, 653, 667
DdeI CTNAG 1 cut(s) 503
DpnI GATC 2 cut(s) 465, 495
DpnII GATC 2 cut(s) 463, 493
EaeI YGGCCR 2 cut(s) 554, 651
EagI CGGCCG 1 cut(s) 554
Ecl136II GAGCTC 1 cut(s) 47
EclXI CGGCCG 1 cut(s) 554
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 576
Eco52I CGGCCG 1 cut(s) 554
Eco53kI GAGCTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 313
Eco72I CACGTG 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 47
EcoRV GATATC 1 cut(s) 576
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 5 cut(s) 280, 298, 426, 518, 650
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FaqI GGGAC 1 cut(s) 277
FatI CATG 5 cut(s) 276, 294, 422, 514, 646
FblI GTMKAC 1 cut(s) 523
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 1 cut(s) 49
FspBI CTAG 2 cut(s) 53, 156
GlaI GCGC 1 cut(s) 445
HaeIII GGCC 2 cut(s) 556, 653
HapII CCGG 1 cut(s) 654
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 446
Hin1II CATG 5 cut(s) 280, 298, 426, 518, 650
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 2 cut(s) 35, 479
HpaII CCGG 1 cut(s) 654
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 3 cut(s) 524, 551, 585
Hpy188I TCNGA 3 cut(s) 199, 322, 703
Hpy188III TCNNGA 3 cut(s) 123, 284, 491
Hpy8I GTNNAC 3 cut(s) 524, 551, 585
HpyAV CCTTC 2 cut(s) 77, 434
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 3 cut(s) 112, 510, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 619
HpyF3I CTNAG 1 cut(s) 503
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 5 cut(s) 280, 298, 426, 518, 650
HspAI GCGC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 463, 493
LmnI GCTCC 2 cut(s) 427, 664
LweI GCATC 2 cut(s) 497, 519
MaeI CTAG 2 cut(s) 53, 156
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 158, 272
MalI GATC 2 cut(s) 465, 495
MboI GATC 2 cut(s) 463, 493
MboII GAAGA 3 cut(s) 73, 319, 683
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 7 cut(s) 78, 135, 233, 406, 497, 685, 697
MluI ACGCGT 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 3 cut(s) 123, 292, 529
Mph1103I ATGCAT 1 cut(s) 512
MseI TTAA 1 cut(s) 344
MspI CCGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 109, 619
NcoI CCATGG 1 cut(s) 294
NdeII GATC 2 cut(s) 463, 493
NlaIII CATG 5 cut(s) 280, 298, 426, 518, 650
NlaIV GGNNCC 2 cut(s) 465, 666
NsiI ATGCAT 1 cut(s) 512
NspI RCATGY 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 121
PaqCI CACCTGC 1 cut(s) 536
PciI ACATGT 1 cut(s) 276
PfeI GAWTC 2 cut(s) 35, 479
PmaCI CACGTG 1 cut(s) 269
PmlI CACGTG 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 269
PscI ACATGT 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 49
PspCI CACGTG 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 465, 666
PsuI RGATCY 1 cut(s) 463
SacI GAGCTC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 344
Sau3AI GATC 2 cut(s) 463, 493
SduI GDGCHC 1 cut(s) 49
SetI ASST 8 cut(s) 49, 94, 157, 271, 383, 432, 550, 610
SfaNI GCATC 2 cut(s) 497, 519
Sfr274I CTCGAG 1 cut(s) 121
SlaI CTCGAG 1 cut(s) 121
SmlI CTYRAG 2 cut(s) 93, 121
SmoI CTYRAG 2 cut(s) 93, 121
Sse9I AATT 7 cut(s) 78, 135, 233, 406, 497, 685, 697
SspMI CTAG 2 cut(s) 53, 156
SstI GAGCTC 1 cut(s) 49
StyI CCWWGG 1 cut(s) 294
TaiI ACGT 1 cut(s) 271
TaqI TCGA 3 cut(s) 122, 351, 680
TaqII GACCGA 1 cut(s) 509
TasI AATT 7 cut(s) 78, 135, 233, 406, 497, 685, 697
TfiI GAWTC 2 cut(s) 35, 479
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TspDTI ATGAA 5 cut(s) 128, 189, 197, 246, 606
XapI RAATTY 1 cut(s) 406
XceI RCATGY 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 523
XspI CTAG 2 cut(s) 53, 156
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.