RchiOBHm_Chr5g0025421

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
19311444 .. 19311834
391 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30508

Sequence Viewer

Length: 261 bp
ATGCAAATCAACCATGGGGCCAACCGGGACAAACCTACTTTATACCCATTGGGAGTTCTTACCTTGGACACTAACAATACATTGAAAATTACAACCCATGGAGCTGGTGGCGGCAATGGTGATCCTCCCATAGTGATCTGTTCTGCTCCAAAAAGTACTACTGCTGTTGCTGCTCAACTATTGGATTCTGGAAATTTTATCCTACATGAGCTGAATTCTGACAGATCAGCAAAGCATGGTGGCAAAGTTTTGATTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

8.94

Weight (kDa)

7.97

Isoelectric Point (pI)

5.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 2 cut(s) 193, 214
AfaI GTAC 1 cut(s) 157
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 2 cut(s) 104, 211
AluI AGCT 2 cut(s) 104, 211
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 193, 214
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 131
BbvI GCAGC 1 cut(s) 157
BcnI CCSGG 1 cut(s) 26
BisI GCNGC 2 cut(s) 112, 171
BlsI GCNGC 2 cut(s) 113, 172
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 13, 63, 97
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 3 cut(s) 13, 63, 97
BseMI GCAATG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 3 cut(s) 121, 135, 224
Bsp19I CCATGG 2 cut(s) 13, 97
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 3 cut(s) 13, 63, 97
BssMI GATC 3 cut(s) 121, 135, 224
BssT1I CCWWGG 3 cut(s) 13, 63, 97
BstDSI CCRYGG 2 cut(s) 13, 97
BstKTI GATC 3 cut(s) 124, 138, 227
BstMBI GATC 3 cut(s) 121, 135, 224
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 157
BstXI CCANNNNNNTGG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 2 cut(s) 13, 97
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 156
CviAII CATG 4 cut(s) 14, 98, 206, 236
CviJI RGCY 3 cut(s) 20, 104, 211
CviKI_1 RGCY 3 cut(s) 20, 104, 211
CviQI GTAC 1 cut(s) 156
DpnI GATC 3 cut(s) 123, 137, 226
DpnII GATC 3 cut(s) 121, 135, 224
Eco130I CCWWGG 3 cut(s) 13, 63, 97
EcoRI GAATTC 1 cut(s) 214
EcoT14I CCWWGG 3 cut(s) 13, 63, 97
ErhI CCWWGG 3 cut(s) 13, 63, 97
FaeI CATG 4 cut(s) 17, 101, 209, 239
FaiI YATR 6 cut(s) 15, 43, 99, 131, 207, 237
FaqI GGGAC 1 cut(s) 41
FatI CATG 4 cut(s) 13, 97, 205, 235
Fnu4HI GCNGC 2 cut(s) 112, 171
Fsp4HI GCNGC 2 cut(s) 112, 171
GluI GCNGC 2 cut(s) 112, 171
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 25
Hin1II CATG 4 cut(s) 17, 101, 209, 239
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 25
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 220, 260
Hpy188III TCNNGA 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
Hsp92II CATG 4 cut(s) 17, 101, 209, 239
Kzo9I GATC 3 cut(s) 121, 135, 224
LmnI GCTCC 2 cut(s) 101, 151
LpnPI CCDG 3 cut(s) 38, 90, 174
Lsp1109I GCAGC 1 cut(s) 157
MalI GATC 3 cut(s) 123, 137, 226
MboI GATC 3 cut(s) 121, 135, 224
MluCI AATT 3 cut(s) 87, 193, 214
MnlI CCTC 1 cut(s) 135
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 26
NcoI CCATGG 2 cut(s) 13, 97
NdeII GATC 3 cut(s) 121, 135, 224
NlaIII CATG 4 cut(s) 17, 101, 209, 239
NlaIV GGNNCC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 113, 172
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 18
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SatI GCNGC 2 cut(s) 112, 171
Sau3AI GATC 3 cut(s) 121, 135, 224
Sau96I GGNCC 1 cut(s) 18
ScaI AGTACT 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 26
SetI ASST 4 cut(s) 37, 65, 106, 213
SgeI CNNG 9 cut(s) 26, 37, 38, 76, 110, 117, 201, 218, 248
Sse9I AATT 3 cut(s) 87, 193, 214
SsiI CCGC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 3 cut(s) 13, 63, 97
TasI AATT 3 cut(s) 87, 193, 214
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 185
TseI GCWGC 1 cut(s) 170
XapI RAATTY 2 cut(s) 193, 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.