Rh5AG176700

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
19700854 .. 19729589
28736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG176700.1

Sequence Viewer

Length: 741 bp
ATGAACACACTGGAACCAGGTGACACTCATGATTCTTCTAGCTTCTTAGTTTCTGTTTATTGGAGTAGTGGAGTCTTTAGAGATGGGAGTTTTGAAAATATTAAGCAGAAGAGGTATACTTTTAGCATTGTTTCAAATCAGAATGAAGATTATTTCAGTTACTCTGTTGTAGATCAAAATGCTAAACCACAATGGCTCCTAACCAAAATAGGGAGACTATATGACTTTGATGGATCACTGGATATTGCAACAGCGGATTCCTGTTATGGGTATAACACTGATGGAGGATGCCAGATTTGGGACCAACCAACTGAGTGCAGGCATTTTGGTGATGTATTTGAGCAAGGAAATGGGTACTTTAATCCGACAGGTCCTAGTGGTTCAAATGTAAAATCTACCAGTGATTCAGACACAAGTCTAAGCATAACTGATTGTAAGGCTGCTTGTTGGGAAAATTGTGACTGTCAAGGGTTCATGTTTCTGTTTGCTAATCAGACTGGATGTCGATTTTGGACTGGAAACTTGAAGTTCATTGCAGACAGCGCAGGCTATAGTTCAAGTGTTGTTTATTTTTTAACACAAATCTCAGCCAGCAGCCGCTGTTCCCAAGAAAACATTGTAGGAATCAGTAAAAAGTCAAAGCAAGCATACATCAGAAGCATTGAAACTCAACTCCCTGAAGAAAATGTCTTTGTTACTAAAGAGACGCCTCAGCCGAATACTGAAAAAAAAAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

246

Amino Acids

27.5

Weight (kDa)

4.82

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 135 - 175 3.8e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 739
AccI GTMKAC 1 cut(s) 116
AciI CCGC 2 cut(s) 254, 598
AclWI GGATC 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 699
AcyI GRCGYC 1 cut(s) 707
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 3 cut(s) 210, 267, 298
AgsI TTSAA 6 cut(s) 95, 135, 384, 526, 558, 665
AhdI GACNNNNNGTC 1 cut(s) 501
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
Alw26I GTCTC 2 cut(s) 208, 698
AlwI GGATC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 600
ApeKI GCWGC 2 cut(s) 440, 594
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 2 cut(s) 301, 371
AsuHPI GGTGA 2 cut(s) 32, 341
AvaII GGWCC 2 cut(s) 301, 371
BbvCI CCTCAGC 1 cut(s) 711
BbvI GCAGC 2 cut(s) 427, 606
BccI CCATC 3 cut(s) 77, 224, 275
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 208, 698
BfaI CTAG 2 cut(s) 39, 375
BfmI CTRYAG 1 cut(s) 550
BisI GCNGC 3 cut(s) 441, 595, 598
BlsI GCNGC 3 cut(s) 442, 596, 599
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 2 cut(s) 301, 371
BmeRI GACNNNNNGTC 1 cut(s) 501
BmgT120I GGNCC 2 cut(s) 301, 371
BmiI GGNNCC 3 cut(s) 15, 197, 302
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 278
BoxI GACNNNNGTC 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 711
BsaHI GRCGYC 1 cut(s) 707
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 267, 298
Bse1I ACTGG 5 cut(s) 15, 243, 399, 502, 520
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 293, 506
BseLI CCNNNNNNNGG 3 cut(s) 210, 267, 298
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 3 cut(s) 303, 600, 725
BseNI ACTGG 5 cut(s) 15, 243, 399, 502, 520
BseXI GCAGC 2 cut(s) 427, 606
BsgI GTGCAG 1 cut(s) 337
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 3 cut(s) 210, 267, 298
BsmAI GTCTC 2 cut(s) 208, 698
BsmBI CGTCTC 1 cut(s) 698
BsmFI GGGAC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 172, 233
BspACI CCGC 2 cut(s) 254, 598
BspCNI CTCAG 3 cut(s) 304, 599, 724
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 15, 197, 302
BspPI GGATC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 5 cut(s) 15, 243, 399, 502, 520
BssMI GATC 2 cut(s) 172, 233
BssNAI GTATAC 1 cut(s) 117
BssNI GRCGYC 1 cut(s) 707
Bst1107I GTATAC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 707
BstC8I GCNNGC 4 cut(s) 320, 547, 592, 645
BstDEI CTNAG 5 cut(s) 46, 312, 419, 586, 711
BstF5I GGATG 2 cut(s) 293, 506
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 2 cut(s) 175, 236
BstMAI GTCTC 2 cut(s) 208, 698
BstMBI GATC 2 cut(s) 172, 233
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstNI CCWGG 1 cut(s) 18
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 550
BstV1I GCAGC 2 cut(s) 427, 606
BstZ17I GTATAC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 293, 506
BtsIMutI CAGTG 4 cut(s) 8, 236, 276, 406
Cac8I GCNNGC 4 cut(s) 320, 547, 592, 645
CaiI CAGNNNCTG 1 cut(s) 600
CciI TCATGA 1 cut(s) 28
CfoI GCGC 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 301, 371
CseI GACGC 1 cut(s) 715
CsiI ACCWGGT 1 cut(s) 16
Csp6I GTAC 1 cut(s) 355
CviAII CATG 2 cut(s) 29, 475
CviJI RGCY 7 cut(s) 42, 196, 440, 549, 590, 597, 715
CviKI_1 RGCY 7 cut(s) 42, 196, 440, 549, 590, 597, 715
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 5 cut(s) 46, 312, 419, 586, 711
DpnI GATC 2 cut(s) 174, 235
DpnII GATC 2 cut(s) 172, 233
DriI GACNNNNNGTC 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 301, 371
Eco57I CTGAAG 1 cut(s) 699
EcoO109I RGGNCCY 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 2 cut(s) 32, 478
FaqI GGGAC 1 cut(s) 314
FatI CATG 2 cut(s) 28, 474
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 3 cut(s) 441, 595, 598
FokI GGATG 2 cut(s) 300, 513
Fsp4HI GCNGC 3 cut(s) 441, 595, 598
FspBI CTAG 2 cut(s) 39, 375
GlaI GCGC 1 cut(s) 544
GluI GCNGC 3 cut(s) 441, 595, 598
HgaI GACGC 1 cut(s) 715
HhaI GCGC 1 cut(s) 545
Hin1I GRCGYC 1 cut(s) 707
Hin1II CATG 2 cut(s) 32, 478
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 5 cut(s) 32, 72, 257, 404, 624
HphI GGTGA 2 cut(s) 32, 341
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 5 cut(s) 141, 366, 409, 495, 656
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4V TGCA 3 cut(s) 248, 318, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpyF3I CTNAG 5 cut(s) 46, 312, 419, 586, 711
Hsp92I GRCGYC 1 cut(s) 707
Hsp92II CATG 2 cut(s) 32, 478
HspAI GCGC 1 cut(s) 543
Kzo9I GATC 2 cut(s) 172, 233
LmnI GCTCC 1 cut(s) 201
Lsp1109I GCAGC 2 cut(s) 427, 606
LweI GCATC 1 cut(s) 278
MabI ACCWGGT 1 cut(s) 16
MaeI CTAG 2 cut(s) 39, 375
MaeIII GTNAC 4 cut(s) 20, 158, 458, 694
MalI GATC 2 cut(s) 174, 235
MboI GATC 2 cut(s) 172, 233
MboII GAAGA 4 cut(s) 27, 121, 158, 692
MluCI AATT 2 cut(s) 454, 734
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 3 cut(s) 105, 278, 720
MseI TTAA 3 cut(s) 102, 360, 575
MslI CAYNNNNRTG 1 cut(s) 327
MspA1I CMGCKG 2 cut(s) 254, 600
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 542
NdeII GATC 2 cut(s) 172, 233
NlaIII CATG 2 cut(s) 32, 478
NlaIV GGNNCC 3 cut(s) 15, 197, 302
NmuCI GTSAC 2 cut(s) 20, 458
PagI TCATGA 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 713
PfeI GAWTC 4 cut(s) 32, 257, 404, 624
PkrI GCNGC 3 cut(s) 442, 596, 599
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 371
PshAI GACNNNNGTC 1 cut(s) 414
PsiI TTATAA 1 cut(s) 739
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 3 cut(s) 15, 197, 302
PspPI GGNCC 2 cut(s) 301, 371
PspPPI RGGWCCY 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 600
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 3 cut(s) 102, 360, 575
SatI GCNGC 3 cut(s) 441, 595, 598
Sau3AI GATC 2 cut(s) 172, 233
Sau96I GGNCC 2 cut(s) 301, 371
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 18
SetI ASST 4 cut(s) 22, 44, 116, 373
SexAI ACCWGGT 1 cut(s) 16
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 550
SinI GGWCC 2 cut(s) 301, 371
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 2 cut(s) 454, 734
SsiI CCGC 2 cut(s) 254, 598
SspI AATATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 39, 375
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 464
TaqI TCGA 1 cut(s) 505
TasI AATT 2 cut(s) 454, 734
TauI GCSGC 1 cut(s) 600
TfiI GAWTC 4 cut(s) 32, 257, 404, 624
Tru1I TTAA 3 cut(s) 102, 360, 575
Tru9I TTAA 3 cut(s) 102, 360, 575
TscAI CASTG 4 cut(s) 15, 243, 283, 406
TseFI GTSAC 2 cut(s) 20, 458
TseI GCWGC 2 cut(s) 440, 594
Tsp45I GTSAC 2 cut(s) 20, 458
TspDTI ATGAA 4 cut(s) 17, 159, 463, 520
TspRI CASTG 4 cut(s) 15, 243, 283, 406
VpaK11BI GGWCC 2 cut(s) 301, 371
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 2 cut(s) 39, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.