RchiOBHm_Chr5g0025221

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000096
Physical Location & Seq
Forward (+)
19177005 .. 19178691
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30491

Sequence Viewer

Length: 966 bp
ATGTGGGATCTTTCCTCTCCAACAACTACTTGTTGGAACACTTGTGGCTGCCTTGGATTCTACTTTCAGCTTAATAATCTGACTGGATGCCAGTACTGGAGTGGAAACTGGGAGTTCATCGAAGAGATCATTGATGACGATTCACGGGTTTCTGTTTATACAACAAAGTCGATTCCCAATATCAAAGTACATGAGTGGAGATGGATTGGCACTGGTATTGCGTTTGCTGTACTGGTAATGATGTTTTACATTATCTGTTATCTACTGAAAAGAAGAAAATTTTTAATTTCAGCTGAGAACAGGAGAAAGATTCAGAATGAGTTGCTTAACCTAATGAAATCTAATAGACCTACTGATGTGAACGGAGTTCAAAATGATAGAAAGATGGAACAACAAGATTTAAGTGTATTTAGCTATGCATCTTTAATGACTGCCACATGCAACTTCTCTGAGAAAAACAAGCTCGGAGAAGGGGGTTTTGGACCTGTTTATAAGGGAAAATTGGTGACGGGACAAGAAATAGCTGTGAAGAGGCTTTCAGAATGTTCAGGACAGGGAACAGTGGAGTTTAAAAATGAACTGAGACTCATATATGAACTCCAACATACAAATCTTGCTCAGCTTTTTGGATTTTGCCTCCATGGAGATGAGAGGATGTTAATATATGAGTACATGCCAAACAGAAGTTTGGACTACTATTTATTTGATTCAACCAGAGCTCTGTTTCTAGATTGGAAGACTCGTTTCAGTATTATTGAAGGAATCGCTCAAGGATTGCTTTACTTGCACAAGTACTCAAGAATGCAAGTAATTCATAGAGATTTGAAACCTAGTAACATTCTACTTGATGAAAATATGAATCCCAAGATTTCTGATTTGGTATGGCAAGGATCTTCACCCATAATGAACGGGAAGCAAAGATTAAGACTAAGAGGATTGTTGGGACATAGTCAGGGCCGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

321

Amino Acids

37.22

Weight (kDa)

8.8

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 149 - 293 1.9e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 152 - 293 5.7e-28 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AclWI GGATC 2 cut(s) 15, 898
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 5 cut(s) 95, 189, 231, 671, 794
AgsI TTSAA 4 cut(s) 371, 711, 758, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AluBI AGCT 7 cut(s) 70, 293, 414, 463, 524, 622, 719
AluI AGCT 7 cut(s) 70, 293, 414, 463, 524, 622, 719
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 1 cut(s) 577
AlwI GGATC 2 cut(s) 15, 898
AoxI GGCC 1 cut(s) 955
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 278
AspS9I GGNCC 3 cut(s) 482, 955, 960
AsuHPI GGTGA 2 cut(s) 517, 888
AvaII GGWCC 2 cut(s) 482, 960
BanII GRGCYC 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 721
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 195, 379
BcoDI GTCTC 1 cut(s) 577
BfaI CTAG 2 cut(s) 728, 831
BisI GCNGC 1 cut(s) 49
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 50
BmcAI AGTACT 2 cut(s) 95, 794
Bme18I GGWCC 2 cut(s) 482, 960
BmgT120I GGNCC 3 cut(s) 482, 955, 960
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 77, 428
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 618
BpuEI CTTGAG 2 cut(s) 753, 781
BsaJI CCNNGG 2 cut(s) 52, 640
Bse118I RCCGGY 1 cut(s) 957
Bse1I ACTGG 6 cut(s) 88, 91, 101, 113, 217, 237
BseDI CCNNGG 2 cut(s) 52, 640
BseGI GGATG 2 cut(s) 92, 660
BseMII CTCAG 4 cut(s) 285, 441, 572, 632
BseNI ACTGG 6 cut(s) 88, 91, 101, 113, 217, 237
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 957
BsiHKAI GWGCWC 1 cut(s) 721
BsiSI CCGG 1 cut(s) 958
BslFI GGGAC 2 cut(s) 525, 957
BsmAI GTCTC 1 cut(s) 577
BsmFI GGGAC 2 cut(s) 525, 957
BsmI GAATGC 1 cut(s) 807
BsnI GGCC 1 cut(s) 957
Bsp1286I GDGCHC 1 cut(s) 721
Bsp143I GATC 3 cut(s) 7, 126, 890
Bsp1720I GCTNAGC 1 cut(s) 618
Bsp19I CCATGG 1 cut(s) 640
BspANI GGCC 1 cut(s) 957
BspCNI CTCAG 4 cut(s) 286, 442, 573, 631
BspPI GGATC 2 cut(s) 15, 898
BsrFI RCCGGY 1 cut(s) 957
BsrI ACTGG 6 cut(s) 88, 91, 101, 113, 217, 237
BssAI RCCGGY 1 cut(s) 957
BssECI CCNNGG 2 cut(s) 52, 640
BssMI GATC 3 cut(s) 7, 126, 890
BssT1I CCWWGG 2 cut(s) 52, 640
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 2 cut(s) 117, 524
BstDEI CTNAG 5 cut(s) 294, 450, 581, 618, 929
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 2 cut(s) 92, 660
BstKTI GATC 3 cut(s) 10, 129, 893
BstMAI GTCTC 1 cut(s) 577
BstMBI GATC 3 cut(s) 7, 126, 890
BstMWI GCNNNNNNNGC 1 cut(s) 784
BstNSI RCATGY 2 cut(s) 441, 676
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 743
BstX2I RGATCY 2 cut(s) 7, 890
BstYI RGATCY 2 cut(s) 7, 890
BsuRI GGCC 1 cut(s) 957
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 2 cut(s) 92, 660
BtsIMutI CAGTG 2 cut(s) 210, 567
Cfr10I RCCGGY 1 cut(s) 957
Cfr13I GGNCC 3 cut(s) 482, 955, 960
Csp6I GTAC 5 cut(s) 94, 188, 230, 670, 793
CviAII CATG 4 cut(s) 191, 438, 641, 673
CviQI GTAC 5 cut(s) 94, 188, 230, 670, 793
DdeI CTNAG 5 cut(s) 294, 450, 581, 618, 929
DpnI GATC 3 cut(s) 9, 128, 892
DpnII GATC 3 cut(s) 7, 126, 890
DraI TTTAAA 1 cut(s) 571
Eam1104I CTCTTC 2 cut(s) 117, 524
EarI CTCTTC 2 cut(s) 117, 524
Ecl136II GAGCTC 1 cut(s) 719
Eco130I CCWWGG 2 cut(s) 52, 640
Eco24I GRGCYC 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 482, 960
Eco53kI GAGCTC 1 cut(s) 719
EcoICRI GAGCTC 1 cut(s) 719
EcoT14I CCWWGG 2 cut(s) 52, 640
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 2 cut(s) 52, 640
FaeI CATG 4 cut(s) 194, 441, 644, 676
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 2 cut(s) 525, 957
FatI CATG 4 cut(s) 190, 437, 640, 672
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 2 cut(s) 99, 667
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 2 cut(s) 728, 831
GluI GCNGC 1 cut(s) 49
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 1 cut(s) 957
HapII CCGG 1 cut(s) 958
Hin1II CATG 4 cut(s) 194, 441, 644, 676
HinfI GANTC 9 cut(s) 57, 140, 172, 310, 585, 707, 739, 762, 859
HpaII CCGG 1 cut(s) 958
HphI GGTGA 2 cut(s) 517, 888
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 6 cut(s) 81, 315, 451, 467, 541, 874
Hpy188III TCNNGA 4 cut(s) 549, 728, 798, 963
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 2 cut(s) 464, 752
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 4 cut(s) 419, 441, 787, 805
HpyF10VI GCNNNNNNNGC 1 cut(s) 784
HpyF3I CTNAG 5 cut(s) 294, 450, 581, 618, 929
Hsp92II CATG 4 cut(s) 194, 441, 644, 676
Kzo9I GATC 3 cut(s) 7, 126, 890
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 2 cut(s) 77, 428
MaeI CTAG 2 cut(s) 728, 831
MaeIII GTNAC 2 cut(s) 505, 833
MalI GATC 3 cut(s) 9, 128, 892
MboI GATC 3 cut(s) 7, 126, 890
MboII GAAGA 5 cut(s) 134, 285, 541, 748, 885
MflI RGATCY 2 cut(s) 7, 890
MhlI GDGCHC 1 cut(s) 721
MluCI AATT 4 cut(s) 278, 285, 500, 810
MlyI GAGTC 2 cut(s) 579, 733
MmeI TCCRAC 3 cut(s) 14, 44, 625
MnlI CCTC 5 cut(s) 25, 525, 645, 647, 926
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 8 cut(s) 72, 284, 327, 401, 425, 570, 659, 923
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 1 cut(s) 958
Mva1269I GAATGC 1 cut(s) 807
MwoI GCNNNNNNNGC 1 cut(s) 784
NcoI CCATGG 1 cut(s) 640
NdeII GATC 3 cut(s) 7, 126, 890
NlaIII CATG 4 cut(s) 194, 441, 644, 676
NmuCI GTSAC 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 2 cut(s) 441, 676
PctI GAATGC 1 cut(s) 807
PfeI GAWTC 7 cut(s) 57, 140, 172, 310, 707, 762, 859
PflFI GACNNNGTC 1 cut(s) 948
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 2 cut(s) 579, 733
PpsI GAGTC 2 cut(s) 579, 733
PsiI TTATAA 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 721
PspPI GGNCC 3 cut(s) 482, 955, 960
PsuI RGATCY 2 cut(s) 7, 890
PsyI GACNNNGTC 1 cut(s) 948
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 5 cut(s) 95, 189, 231, 671, 794
RsaNI GTAC 5 cut(s) 94, 188, 230, 670, 793
RseI CAYNNNNRTG 1 cut(s) 645
SacI GAGCTC 1 cut(s) 721
SaqAI TTAA 8 cut(s) 72, 284, 327, 401, 425, 570, 659, 923
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 3 cut(s) 7, 126, 890
Sau96I GGNCC 3 cut(s) 482, 955, 960
ScaI AGTACT 2 cut(s) 95, 794
SchI GAGTC 2 cut(s) 579, 733
SduI GDGCHC 1 cut(s) 721
SfaNI GCATC 2 cut(s) 77, 428
SinI GGWCC 2 cut(s) 482, 960
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 2 cut(s) 768, 796
SmoI CTYRAG 2 cut(s) 768, 796
Sse9I AATT 4 cut(s) 278, 285, 500, 810
SspMI CTAG 2 cut(s) 728, 831
SstI GAGCTC 1 cut(s) 721
StyI CCWWGG 2 cut(s) 52, 640
TaaI ACNGT 1 cut(s) 562
TaqI TCGA 2 cut(s) 120, 170
TasI AATT 4 cut(s) 278, 285, 500, 810
TatI WGTACW 5 cut(s) 93, 187, 229, 669, 792
TfiI GAWTC 7 cut(s) 57, 140, 172, 310, 707, 762, 859
Tru1I TTAA 8 cut(s) 72, 284, 327, 401, 425, 570, 659, 923
Tru9I TTAA 8 cut(s) 72, 284, 327, 401, 425, 570, 659, 923
TscAI CASTG 2 cut(s) 217, 567
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 8 cut(s) 106, 350, 591, 609, 803, 864, 872, 920
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 2 cut(s) 217, 567
Tth111I GACNNNGTC 1 cut(s) 948
VpaK11BI GGWCC 2 cut(s) 482, 960
XapI RAATTY 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 727
XceI RCATGY 2 cut(s) 441, 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XspI CTAG 2 cut(s) 728, 831
ZrmI AGTACT 2 cut(s) 95, 794
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.