Rroxscaffold_1G00053740

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
74952686 .. 74953219
534 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00053740.1

Sequence Viewer

Length: 438 bp
ATGTCTCCAGAGTATGCTATGGGGGGAATTTTTTCTGTAAAATCCGATGTGTATAGTTTTGGAGTGTTGGTGCTTGAAATCATTAGTGGTAGGAGAAACACGAGCTTCTACGATGACGAACGCGTGGTCAATACAGTCAGATATGCATGGGAGTTATGGAATGAAGGTGAAGAGTTAGCATTCAAGGATCCAACACTAGGTGATTCATATCATGAGAATCAATTGTTGAGATGCATTCATGTTGGTCTACTATGCGTGGAGGAGAATGGAGCCGATCGGCCTACTATGTTAGAAGTCATTTCCATGTTGACAAGTGAAAGCATGTCACTACCTACGCCTACAAAGCCAGCATTCTGTAGGGGAGAGAAGAGGGGTCAGAACTGGTACGGTTGGAAAAGCTTCAGAAAATGCATCGATAAATACAATGTCCAATTCTGA

Protein Analysis

145

Amino Acids

16.69

Weight (kDa)

5.23

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 47 3.4e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 247
AccII CGCG 1 cut(s) 123
AclWI GGATC 2 cut(s) 182, 195
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 385
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 2 cut(s) 77, 184
AluBI AGCT 2 cut(s) 105, 399
AluI AGCT 2 cut(s) 105, 399
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 182, 195
AoxI GGCC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 27
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
Asp700I GAANNNNTTC 2 cut(s) 31, 398
AsuHPI GGTGA 2 cut(s) 179, 212
BamHI GGATCC 1 cut(s) 187
BauI CACGAG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 355
BmiI GGNNCC 2 cut(s) 189, 271
BmsI GCATC 2 cut(s) 221, 420
Bsa29I ATCGAT 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 414
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 280
BshVI ATCGAT 1 cut(s) 414
BsiEI CGRYCG 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 3 cut(s) 179, 234, 350
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 187, 274
BspANI GGCC 1 cut(s) 280
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 189, 271
BspPI GGATC 2 cut(s) 182, 195
BsrI ACTGG 1 cut(s) 386
BssMI GATC 2 cut(s) 187, 274
BssSI CACGAG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 136, 389
Bst6I CTCTTC 2 cut(s) 165, 362
BstC8I GCNNGC 1 cut(s) 348
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 2 cut(s) 190, 277
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 187, 274
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNSI RCATGY 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 355
BstUI CGCG 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 1 cut(s) 280
BsuTUI ATCGAT 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 348
CciI TCATGA 1 cut(s) 211
ClaI ATCGAT 1 cut(s) 414
Csp6I GTAC 1 cut(s) 385
CviAII CATG 5 cut(s) 147, 212, 239, 304, 322
CviJI RGCY 5 cut(s) 105, 272, 280, 346, 399
CviKI_1 RGCY 5 cut(s) 105, 272, 280, 346, 399
CviQI GTAC 1 cut(s) 385
DpnI GATC 2 cut(s) 189, 276
DpnII GATC 2 cut(s) 187, 274
DraIII CACNNNGTG 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 165, 362
EarI CTCTTC 2 cut(s) 165, 362
Eco57I CTGAAG 1 cut(s) 385
EcoT22I ATGCAT 3 cut(s) 148, 236, 413
FaeI CATG 5 cut(s) 150, 215, 242, 307, 325
FatI CATG 5 cut(s) 146, 211, 238, 303, 321
FblI GTMKAC 1 cut(s) 247
FspBI CTAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 280
Hin1II CATG 5 cut(s) 150, 215, 242, 307, 325
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 2 cut(s) 203, 217
HphI GGTGA 2 cut(s) 179, 212
Hpy166II GTNNAC 2 cut(s) 248, 309
Hpy188I TCNGA 5 cut(s) 46, 140, 378, 404, 437
Hpy188III TCNNGA 2 cut(s) 8, 212
Hpy8I GTNNAC 2 cut(s) 248, 309
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 136, 389
HpyCH4V TGCA 3 cut(s) 146, 234, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
Hsp92II CATG 5 cut(s) 150, 215, 242, 307, 325
Kzo9I GATC 2 cut(s) 187, 274
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 3 cut(s) 21, 360, 367
LweI GCATC 2 cut(s) 221, 420
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 324
MalI GATC 2 cut(s) 189, 276
MboI GATC 2 cut(s) 187, 274
MboII GAAGA 2 cut(s) 182, 379
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 1 cut(s) 187
MluCI AATT 3 cut(s) 27, 221, 431
MluI ACGCGT 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 215, 371
MnlI CCTC 2 cut(s) 253, 363
Mph1103I ATGCAT 3 cut(s) 148, 236, 413
MroXI GAANNNNTTC 2 cut(s) 31, 398
MslI CAYNNNNRTG 1 cut(s) 302
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 3 cut(s) 179, 234, 350
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 343
NdeII GATC 2 cut(s) 187, 274
NlaIII CATG 5 cut(s) 150, 215, 242, 307, 325
NlaIV GGNNCC 2 cut(s) 189, 271
NmuCI GTSAC 1 cut(s) 324
NsiI ATGCAT 3 cut(s) 148, 236, 413
NspI RCATGY 1 cut(s) 325
PagI TCATGA 1 cut(s) 211
PctI GAATGC 3 cut(s) 179, 234, 350
PdmI GAANNNNTTC 2 cut(s) 31, 398
PfeI GAWTC 2 cut(s) 203, 217
Ple19I CGATCG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 189, 271
PsuI RGATCY 1 cut(s) 187
PvuI CGATCG 1 cut(s) 277
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 302
Sau3AI GATC 2 cut(s) 187, 274
SetI ASST 5 cut(s) 107, 169, 202, 334, 401
SfaNI GCATC 2 cut(s) 221, 420
SfcI CTRYAG 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 3 cut(s) 27, 221, 431
SspMI CTAG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 136, 389
TaqI TCGA 1 cut(s) 414
TasI AATT 3 cut(s) 27, 221, 431
TfiI GAWTC 2 cut(s) 203, 217
TseFI GTSAC 1 cut(s) 324
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 3 cut(s) 177, 195, 227
XapI RAATTY 1 cut(s) 27
XceI RCATGY 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 247
XmnI GAANNNNTTC 2 cut(s) 31, 398
XspI CTAG 1 cut(s) 197
Zsp2I ATGCAT 3 cut(s) 148, 236, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.