Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000096

Physical Location & Seq

Genomic Coordinates Forward (+)

18814733 .. 18820328

Gene Structure 5596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG176100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGCTAGTAGCAGCCGCCTGGCGTTAATTTGCTTACTCTTCTTTTCATGCTTGTGGAGATCTCTTGCTGCAAGAAGAGATACACTGAAACCAGGTGATACGCTCAATTCCTCGAGCTCCTTGGTTTCTGAAACAGGTAAGTTCAGTTTGGGGTTCTTCCAAAATGGAATGTCGAAATCCAGCTATCTAGCAATCTCCCACACCAATACTGGAAATTCTATAACTTATGCATGGATTGCCAACCGAAAAACACCTATTCTATACCCAACAGGAGTTCTTACCTTGGATAGGAACAACACCTTGAAAGTTACCCAAAGTGGTGGCGATCCTCTGCTTATTTACTCTGCTTCAGAAAGTACTACCAATAATTCCAATATTGTTGCTACCCTTTTGGATTCTGGCAATTTCATTCTACAACAAGTGAACTCCGACGGATCAACGAAGAGGGTTTTGTGGCAAAGTTTTGATCATCCCGGAGACACCCTATTGCCAGGTATGAAGTTAGGTGTAGTTGATTATAAAAATGGTCACATTTGGTCACTTTCAGCGTGGACTGGTCTGTACAGTGTAGAACCCGGGGCCTTCACTCTCGATTGGGACCCCGGTGAGCACCAGTTGAAGATCAAGGAACGAGGGAAGGTTTGTTGGAGTAGTGGTGTCTTTAGCAATGGAAGATTCAAGTTTGTATTACCTGATGATGATTCCAAGAAGTTGAGGTACAATTTTAGCATTGTTTCGAATGAGAATGAAGACTACTTTACTTATACTTATGTTGGTGATCAAAGTGATGCATCACAATGGGTGCTGAACGCCATGGGGCGACTACATGACTTCGATGAAAAGGTTGATATTGCGCGAGCAGATTACTGTTACGGCTATAACAGTGATGGAGGGTGCGCGAGATGGGAGCAGCCAAGTTGCAGACATGTGGGTGATAAATTTGTGCTAAAAATTGGTTCCTTTCGAGAAATGACCAGCTCTAATTCAATATATACGAGTGATTCAAATACGACTCTGGGATATAGTGATTGTATGACTACTTGTTGGAACACTTGTGGCTGCCTTGGATTCAACTTTCGGCTTAATAATCTGACTGGATGCCAGTACTGGAGTGGAAACTGGGAGTTCATCGAAGAGATCACTGATGACGATTCACGGGTTTTTGTTTATACAACAAAGTCGACTCCCAATATCAAAGTACATGAGTGGAGATGGATTGGCACTGGTATTGCGTTTGCTGTACTGCATGGTCCATCTGAATGCTTATTGAACACGGTGGAAGCCTGTGCAATTGAGACCTGGCCTGCACTGAATGATCATTTTCCTTTCATTTATTGTGTTGAGAGTCTGGTTTACGGGCACAAGAATCCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

458

Amino Acids

51.27

Weight (kDa)

5.6

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	75 - 184	3e-26	D-mannose binding lectin
GILT	PF03227	410 - 449	1.3e-09	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000096)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica	MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica	Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis	pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis	RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata	RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora	Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa	Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha	Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana	Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AccI	GTMKAC	1 cut(s)	1181
AccII	CGCG	2 cut(s)	856, 899
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	2 cut(s)	320, 442
AcsI	RAATTY	2 cut(s)	214, 938
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	6 cut(s)	358, 563, 719, 1106, 1200, 1242
AfiI	CCNNNNNNNGG	1 cut(s)	288
AflIII	ACRYGT	1 cut(s)	925
AgsI	TTSAA	7 cut(s)	304, 619, 679, 987, 1005, 1072, 1270
AjnI	CCWGG	4 cut(s)	18, 91, 490, 1298
AluBI	AGCT	3 cut(s)	117, 183, 978
AluI	AGCT	3 cut(s)	117, 183, 978
Alw21I	GWGCWC	2 cut(s)	119, 612
Alw26I	GTCTC	2 cut(s)	471, 1289
AlwI	GGATC	2 cut(s)	320, 442
Ama87I	CYCGRG	2 cut(s)	112, 575
AoxI	GGCC	2 cut(s)	579, 1301
ApeKI	GCWGC	4 cut(s)	12, 68, 910, 1059
ApoI	RAATTY	2 cut(s)	214, 938
AspLEI	GCGC	2 cut(s)	856, 899
AspS9I	GGNCC	3 cut(s)	579, 598, 1250
AsuC2I	CCSGG	4 cut(s)	474, 576, 577, 603
AsuHPI	GGTGA	4 cut(s)	107, 617, 788, 944
AsuII	TTCGAA	1 cut(s)	737
AvaI	CYCGRG	2 cut(s)	112, 575
AvaII	GGWCC	2 cut(s)	598, 1250
BaeGI	GKGCMC	1 cut(s)	1362
BanII	GRGCYC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
BbsI	GAAGAC	1 cut(s)	756
Bbv12I	GWGCWC	2 cut(s)	119, 612
BbvI	GCAGC	4 cut(s)	24, 55, 922, 1046
BccI	CCATC	4 cut(s)	881, 897, 1206, 1261
BceAI	ACGGC	1 cut(s)	889
BciT130I	CCWGG	4 cut(s)	20, 93, 492, 1300
BclI	TGATCA	3 cut(s)	466, 778, 1315
BcnI	CCSGG	4 cut(s)	474, 576, 577, 603
BcoDI	GTCTC	2 cut(s)	471, 1289
BfaI	CTAG	2 cut(s)	6, 188
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	5 cut(s)	13, 16, 69, 911, 1060
BlsI	GCNGC	5 cut(s)	14, 17, 70, 912, 1061
BmcAI	AGTACT	2 cut(s)	358, 1106
Bme1390I	CCNGG	8 cut(s)	20, 93, 474, 492, 576, 577, 603, 1300
Bme18I	GGWCC	2 cut(s)	598, 1250
BmeT110I	CYCGRG	2 cut(s)	112, 575
BmgT120I	GGNCC	3 cut(s)	579, 598, 1250
BmiI	GGNNCC	4 cut(s)	580, 599, 600, 958
BmrFI	CCNGG	8 cut(s)	20, 93, 474, 492, 576, 577, 603, 1300
BmrI	ACTGGG	2 cut(s)	1129, 1366
BmsI	GCATC	3 cut(s)	778, 800, 1088
BmuI	ACTGGG	2 cut(s)	1129, 1366
BpiI	GAAGAC	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	1129
Bpu14I	TTCGAA	1 cut(s)	737
BpuMI	CCSGG	4 cut(s)	474, 576, 577, 603
BsaI	GGTCTC	1 cut(s)	1289
BsaJI	CCNNGG	7 cut(s)	120, 282, 575, 576, 601, 813, 1063
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse1I	ACTGG	9 cut(s)	214, 559, 613, 1099, 1102, 1112, 1124, 1228, 1372
Bse3DI	GCAATG	1 cut(s)	673
BseBI	CCWGG	4 cut(s)	20, 93, 492, 1300
BseDI	CCNNGG	7 cut(s)	120, 282, 575, 576, 601, 813, 1063
BseGI	GGATG	2 cut(s)	469, 1103
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	673
BseNI	ACTGG	9 cut(s)	214, 559, 613, 1099, 1102, 1112, 1124, 1228, 1372
BseSI	GKGCMC	1 cut(s)	1362
BseXI	GCAGC	4 cut(s)	24, 55, 922, 1046
BsgI	GTGCAG	1 cut(s)	1290
Bsh1236I	CGCG	2 cut(s)	856, 899
BshFI	GGCC	2 cut(s)	581, 1303
BsiHKAI	GWGCWC	2 cut(s)	119, 612
BsiHKCI	CYCGRG	2 cut(s)	112, 575
BsiSI	CCGG	3 cut(s)	474, 576, 603
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	471, 1289
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	1265
BsnI	GGCC	2 cut(s)	581, 1303
Bso31I	GGTCTC	1 cut(s)	1289
BsoBI	CYCGRG	2 cut(s)	112, 575
Bsp119I	TTCGAA	1 cut(s)	737
Bsp1286I	GDGCHC	3 cut(s)	119, 612, 1362
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	8 cut(s)	59, 325, 434, 466, 621, 778, 1137, 1315
Bsp19I	CCATGG	1 cut(s)	813
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	581, 1303
BspFNI	CGCG	2 cut(s)	856, 899
BspLI	GGNNCC	4 cut(s)	580, 599, 600, 958
BspPI	GGATC	2 cut(s)	320, 442
BspT104I	TTCGAA	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	1289
BsrDI	GCAATG	1 cut(s)	673
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	9 cut(s)	214, 559, 613, 1099, 1102, 1112, 1124, 1228, 1372
BssECI	CCNNGG	7 cut(s)	120, 282, 575, 576, 601, 813, 1063
BssMI	GATC	8 cut(s)	59, 325, 434, 466, 621, 778, 1137, 1315
BssT1I	CCWWGG	4 cut(s)	120, 282, 813, 1063
Bst2UI	CCWGG	4 cut(s)	20, 93, 492, 1300
Bst4CI	ACNGT	4 cut(s)	566, 869, 884, 1276
Bst6I	CTCTTC	4 cut(s)	44, 70, 437, 1128
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	561
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	858, 1305
BstDSI	CCRYGG	1 cut(s)	813
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	469, 1103
BstFNI	CGCG	2 cut(s)	856, 899
BstHHI	GCGC	2 cut(s)	856, 899
BstKTI	GATC	8 cut(s)	62, 328, 437, 469, 624, 781, 1140, 1318
BstMAI	GTCTC	2 cut(s)	471, 1289
BstMBI	GATC	8 cut(s)	59, 325, 434, 466, 621, 778, 1137, 1315
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	4 cut(s)	20, 93, 492, 1300
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	8 cut(s)	18, 91, 472, 490, 574, 575, 601, 1298
BstSLI	GKGCMC	1 cut(s)	1362
BstUI	CGCG	2 cut(s)	856, 899
BstV1I	GCAGC	4 cut(s)	24, 55, 922, 1046
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	59
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	581, 1303
BtgI	CCRYGG	1 cut(s)	813
BtsCI	GGATG	2 cut(s)	469, 1103
BtsIMutI	CAGTG	6 cut(s)	83, 571, 889, 1140, 1221, 1307
Cac8I	GCNNGC	2 cut(s)	858, 1305
CfoI	GCGC	2 cut(s)	856, 899
Cfr13I	GGNCC	3 cut(s)	579, 598, 1250
Cfr9I	CCCGGG	1 cut(s)	575
CsiI	ACCWGGT	1 cut(s)	91
Csp6I	GTAC	6 cut(s)	357, 562, 718, 1105, 1199, 1241
CviAII	CATG	7 cut(s)	48, 231, 814, 827, 926, 1202, 1247
CviQI	GTAC	6 cut(s)	357, 562, 718, 1105, 1199, 1241
DpnI	GATC	8 cut(s)	61, 327, 436, 468, 623, 780, 1139, 1317
DpnII	GATC	8 cut(s)	59, 325, 434, 466, 621, 778, 1137, 1315
Eam1104I	CTCTTC	4 cut(s)	44, 70, 437, 1128
EarI	CTCTTC	4 cut(s)	44, 70, 437, 1128
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	4 cut(s)	120, 282, 813, 1063
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	1289
Eco47I	GGWCC	2 cut(s)	598, 1250
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	2 cut(s)	112, 575
EcoICRI	GAGCTC	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoO109I	RGGNCCY	2 cut(s)	579, 598
EcoRII	CCWGG	4 cut(s)	18, 91, 490, 1298
EcoT14I	CCWWGG	4 cut(s)	120, 282, 813, 1063
EcoT22I	ATGCAT	2 cut(s)	232, 793
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	4 cut(s)	120, 282, 813, 1063
FaeI	CATG	7 cut(s)	51, 234, 817, 830, 929, 1205, 1250
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	7 cut(s)	47, 230, 813, 826, 925, 1201, 1246
FbaI	TGATCA	3 cut(s)	466, 778, 1315
FblI	GTMKAC	1 cut(s)	1181
Fnu4HI	GCNGC	5 cut(s)	13, 16, 69, 911, 1060
FokI	GGATG	2 cut(s)	456, 1110
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	5 cut(s)	13, 16, 69, 911, 1060
FspBI	CTAG	2 cut(s)	6, 188
GlaI	GCGC	2 cut(s)	855, 898
GluI	GCNGC	5 cut(s)	13, 16, 69, 911, 1060
GsuI	CTGGAG	1 cut(s)	1129
HaeIII	GGCC	2 cut(s)	581, 1303
HapII	CCGG	3 cut(s)	474, 576, 603
HhaI	GCGC	2 cut(s)	856, 899
Hin1II	CATG	7 cut(s)	51, 234, 817, 830, 929, 1205, 1250
Hin6I	GCGC	2 cut(s)	854, 897
HinP1I	GCGC	2 cut(s)	854, 897
HincII	GTYRAC	1 cut(s)	1182
HindII	GTYRAC	1 cut(s)	1182
HpaII	CCGG	3 cut(s)	474, 576, 603
HphI	GGTGA	4 cut(s)	107, 617, 788, 944
Hpy166II	GTNNAC	4 cut(s)	424, 552, 1182, 1354
Hpy188I	TCNGA	5 cut(s)	130, 352, 430, 1092, 1258
Hpy188III	TCNNGA	2 cut(s)	590, 965
Hpy8I	GTNNAC	4 cut(s)	424, 552, 1182, 1354
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	2 cut(s)	592, 631
HpyCH4III	ACNGT	4 cut(s)	566, 869, 884, 1276
HpyCH4V	TGCA	7 cut(s)	71, 230, 791, 921, 1246, 1289, 1307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	7 cut(s)	51, 234, 817, 830, 929, 1205, 1250
HspAI	GCGC	2 cut(s)	854, 897
KflI	GGGWCCC	1 cut(s)	598
Ksp22I	TGATCA	3 cut(s)	466, 778, 1315
Kzo9I	GATC	8 cut(s)	59, 325, 434, 466, 621, 778, 1137, 1315
LmnI	GCTCC	2 cut(s)	122, 907
Lsp1109I	GCAGC	4 cut(s)	24, 55, 922, 1046
LweI	GCATC	3 cut(s)	778, 800, 1088
MabI	ACCWGGT	1 cut(s)	91
MaeI	CTAG	2 cut(s)	6, 188
MaeIII	GTNAC	4 cut(s)	307, 527, 537, 869
MalI	GATC	8 cut(s)	61, 327, 436, 468, 623, 780, 1139, 1317
MboI	GATC	8 cut(s)	59, 325, 434, 466, 621, 778, 1137, 1315
MboII	GAAGA	8 cut(s)	31, 87, 148, 454, 631, 684, 761, 1145
MfeI	CAATTG	1 cut(s)	1290
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	3 cut(s)	119, 612, 1362
MlyI	GAGTC	3 cut(s)	1006, 1177, 1354
MmeI	TCCRAC	3 cut(s)	453, 626, 1025
MnlI	CCTC	6 cut(s)	121, 339, 438, 626, 708, 884
Mph1103I	ATGCAT	2 cut(s)	232, 793
MseI	TTAA	2 cut(s)	26, 1083
MslI	CAYNNNNRTG	4 cut(s)	52, 796, 930, 1258
MspI	CCGG	3 cut(s)	474, 576, 603
MspR9I	CCNGG	8 cut(s)	20, 93, 474, 492, 576, 577, 603, 1300
MunI	CAATTG	1 cut(s)	1290
Mva1269I	GAATGC	1 cut(s)	1265
MvaI	CCWGG	4 cut(s)	20, 93, 492, 1300
MvnI	CGCG	2 cut(s)	856, 899
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	4 cut(s)	474, 576, 577, 603
NcoI	CCATGG	1 cut(s)	813
NdeII	GATC	8 cut(s)	59, 325, 434, 466, 621, 778, 1137, 1315
NlaIII	CATG	7 cut(s)	51, 234, 817, 830, 929, 1205, 1250
NlaIV	GGNNCC	4 cut(s)	580, 599, 600, 958
NmuCI	GTSAC	2 cut(s)	527, 537
NsiI	ATGCAT	2 cut(s)	232, 793
NspI	RCATGY	1 cut(s)	929
NspV	TTCGAA	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	112
PciI	ACATGT	1 cut(s)	925
PctI	GAATGC	1 cut(s)	1265
PfeI	GAWTC	7 cut(s)	395, 675, 701, 1001, 1068, 1151, 1366
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	5 cut(s)	14, 17, 70, 912, 1061
PleI	GAGTC	3 cut(s)	1006, 1177, 1353
PpsI	GAGTC	3 cut(s)	1006, 1177, 1353
PpuMI	RGGWCCY	1 cut(s)	598
PscI	ACATGT	1 cut(s)	925
PsiI	TTATAA	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	4 cut(s)	18, 91, 490, 1298
PspGI	CCWGG	4 cut(s)	18, 91, 490, 1298
PspN4I	GGNNCC	4 cut(s)	580, 599, 600, 958
PspPI	GGNCC	3 cut(s)	579, 598, 1250
PspPPI	RGGWCCY	1 cut(s)	598
PspXI	VCTCGAGB	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	6 cut(s)	358, 563, 719, 1106, 1200, 1242
RsaNI	GTAC	6 cut(s)	357, 562, 718, 1105, 1199, 1241
RseI	CAYNNNNRTG	4 cut(s)	52, 796, 930, 1258
SacI	GAGCTC	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	1180
SaqAI	TTAA	2 cut(s)	26, 1083
SatI	GCNGC	5 cut(s)	13, 16, 69, 911, 1060
Sau3AI	GATC	8 cut(s)	59, 325, 434, 466, 621, 778, 1137, 1315
Sau96I	GGNCC	3 cut(s)	579, 598, 1250
ScaI	AGTACT	2 cut(s)	358, 1106
SchI	GAGTC	3 cut(s)	1006, 1177, 1354
ScrFI	CCNGG	8 cut(s)	20, 93, 474, 492, 576, 577, 603, 1300
SduI	GDGCHC	3 cut(s)	119, 612, 1362
SexAI	ACCWGGT	1 cut(s)	91
SfaNI	GCATC	3 cut(s)	778, 800, 1088
Sfr274I	CTCGAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	737
SinI	GGWCC	2 cut(s)	598, 1250
SlaI	CTCGAG	1 cut(s)	112
SmaI	CCCGGG	1 cut(s)	577
SmiMI	CAYNNNNRTG	4 cut(s)	52, 796, 930, 1258
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SsiI	CCGC	1 cut(s)	16
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	6, 188
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	8 cut(s)	18, 91, 472, 490, 574, 575, 601, 1298
StyI	CCWWGG	4 cut(s)	120, 282, 813, 1063
TaaI	ACNGT	4 cut(s)	566, 869, 884, 1276
TaqI	TCGA	8 cut(s)	113, 173, 591, 737, 834, 964, 1131, 1181
TatI	WGTACW	5 cut(s)	356, 561, 1104, 1198, 1240
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	7 cut(s)	395, 675, 701, 1001, 1068, 1151, 1366
Tru1I	TTAA	2 cut(s)	26, 1083
Tru9I	TTAA	2 cut(s)	26, 1083
TscAI	CASTG	6 cut(s)	90, 571, 889, 1147, 1228, 1314
TseFI	GTSAC	2 cut(s)	527, 537
TseI	GCWGC	4 cut(s)	12, 68, 910, 1059
Tsp45I	GTSAC	2 cut(s)	527, 537
TspDTI	ATGAA	7 cut(s)	36, 397, 512, 762, 852, 1117, 1318
TspGWI	ACGGA	1 cut(s)	447
TspMI	CCCGGG	1 cut(s)	575
TspRI	CASTG	6 cut(s)	90, 571, 889, 1147, 1228, 1314
VpaK11BI	GGWCC	2 cut(s)	598, 1250
XagI	CCTNNNNNAGG	1 cut(s)	286
XapI	RAATTY	2 cut(s)	214, 938
XceI	RCATGY	1 cut(s)	929
XcmI	CCANNNNNNNNNTGG	2 cut(s)	206, 1109
XhoI	CTCGAG	1 cut(s)	112
XmaI	CCCGGG	1 cut(s)	575
XmiI	GTMKAC	1 cut(s)	1181
XspI	CTAG	2 cut(s)	6, 188
ZrmI	AGTACT	2 cut(s)	358, 1106
Zsp2I	ATGCAT	2 cut(s)	232, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.