Rroxscaffold_1G00053930

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
75174362 .. 75174917
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053930.1

Sequence Viewer

Length: 456 bp
ATGCCTCCTGAGTACGCAATGGAAGGAATTTTCTCTACAAAATCCGATGTATACAGTTTTGGAGTGTTAGTGCTTGAAATCATAAGTGGTAGGAGAAACAATAGCTTCTATAATGATGATCGCGCCATCAATTTAGTAGGATATGCATGGGAGTTGTGGAAAGAAGGTGCAGGGCTACAACTCATGGATCCAACACTAGCTGATTCGTGTACTAACAAAGATCAACTGTTAAGATGCGTTCAAGTTGGTCTTCTATGCGTGGAGGATAGTGCAGCGAATCGACCTACCATGTCAGATGTGCTCTCCGGGTTGACAAATGAAAGCTCACCGTTACCTGCACCTACAAAGCCAGCATTTTCTACAGATAGACATGCGGTCTCCAGTACTATAGTTGAAAAGGAACCACAAACTTTATCTGTAAATGATCTTACCATTTCCGCTTGTGATGGACGTTAA

Protein Analysis

151

Amino Acids

16.45

Weight (kDa)

4.52

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 41 2.2e-07 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 106 - 151 9.1e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 123
AciI CCGC 2 cut(s) 374, 438
AclWI GGATC 2 cut(s) 182, 195
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 3 cut(s) 14, 211, 385
AgsI TTSAA 3 cut(s) 77, 242, 395
AhdI GACNNNNNGTC 1 cut(s) 374
AluBI AGCT 3 cut(s) 105, 200, 324
AluI AGCT 3 cut(s) 105, 200, 324
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 2 cut(s) 182, 195
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 318
BamHI GGATCC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 134, 440
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 2 cut(s) 360, 387
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 307
BmeRI GACNNNNNGTC 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 189, 402
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 307
BsaI GGTCTC 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 284
BsgI GTGCAG 3 cut(s) 189, 291, 321
Bsh1236I CGCG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 382
Bso31I GGTCTC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 4 cut(s) 118, 187, 220, 424
BspACI CCGC 2 cut(s) 374, 438
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 189, 402
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 2 cut(s) 182, 195
BspTNI GGTCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 381
BssMI GATC 4 cut(s) 118, 187, 220, 424
BssNAI GTATAC 1 cut(s) 52
Bst1107I GTATAC 1 cut(s) 52
Bst4CI ACNGT 3 cut(s) 56, 228, 330
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 4 cut(s) 121, 190, 223, 427
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 4 cut(s) 118, 187, 220, 424
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 2 cut(s) 360, 387
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 52
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 13, 210, 384
CviAII CATG 4 cut(s) 147, 184, 289, 371
CviJI RGCY 5 cut(s) 105, 175, 200, 324, 349
CviKI_1 RGCY 5 cut(s) 105, 175, 200, 324, 349
CviQI GTAC 3 cut(s) 13, 210, 384
DdeI CTNAG 1 cut(s) 9
DpnI GATC 4 cut(s) 120, 189, 222, 426
DpnII GATC 4 cut(s) 118, 187, 220, 424
DriI GACNNNNNGTC 1 cut(s) 374
Eam1105I GACNNNNNGTC 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 4 cut(s) 150, 187, 292, 374
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 4 cut(s) 146, 183, 288, 370
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 197
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 364
HapII CCGG 1 cut(s) 306
HhaI GCGC 1 cut(s) 125
Hin1II CATG 4 cut(s) 150, 187, 292, 374
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 203, 277
HpaII CCGG 1 cut(s) 306
HphI GGTGA 1 cut(s) 318
Hpy166II GTNNAC 3 cut(s) 52, 210, 312
Hpy188I TCNGA 2 cut(s) 46, 295
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 3 cut(s) 52, 210, 312
HpyAV CCTTC 2 cut(s) 17, 158
HpyCH4III ACNGT 3 cut(s) 56, 228, 330
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 4 cut(s) 146, 170, 272, 338
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 4 cut(s) 150, 187, 292, 374
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 4 cut(s) 118, 187, 220, 424
LpnPI CCDG 6 cut(s) 21, 156, 319, 348, 363, 394
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 1 cut(s) 330
MalI GATC 4 cut(s) 120, 189, 222, 426
MboI GATC 4 cut(s) 118, 187, 220, 424
MboII GAAGA 1 cut(s) 242
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 2 cut(s) 27, 130
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 2 cut(s) 15, 256
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 2 cut(s) 230, 454
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 123
NciI CCSGG 1 cut(s) 307
NdeII GATC 4 cut(s) 118, 187, 220, 424
NlaIII CATG 4 cut(s) 150, 187, 292, 374
NlaIV GGNNCC 2 cut(s) 189, 402
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 1 cut(s) 374
PfeI GAWTC 2 cut(s) 203, 277
PkrI GCNGC 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 189, 402
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 3 cut(s) 14, 211, 385
RsaNI GTAC 3 cut(s) 13, 210, 384
SaqAI TTAA 2 cut(s) 230, 454
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 4 cut(s) 118, 187, 220, 424
ScaI AGTACT 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 303
SetI ASST 8 cut(s) 107, 169, 202, 286, 326, 337, 343, 454
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 2 cut(s) 360, 387
Sse9I AATT 2 cut(s) 27, 130
SsiI CCGC 2 cut(s) 374, 438
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 3 cut(s) 56, 228, 330
TaiI ACGT 1 cut(s) 454
TaqI TCGA 1 cut(s) 280
TasI AATT 2 cut(s) 27, 130
TatI WGTACW 2 cut(s) 209, 383
TfiI GAWTC 2 cut(s) 203, 277
Tru1I TTAA 2 cut(s) 230, 454
Tru9I TTAA 2 cut(s) 230, 454
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 333
XapI RAATTY 1 cut(s) 27
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 385
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.