RchiOBHm_Chr5g0025611

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000096
Physical Location & Seq
Forward (+)
19528456 .. 19529154
699 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30524

Sequence Viewer

Length: 528 bp
ATGAATCCCAAAATTTCTGATTTTGGAATGGCAAGGATTTTCACGAATGATGAACAAGAAGCAAATACTATGAAGATTGTTGGGACACGTGGTTACATGTCCCCTGAGTATGTTATGGGGGGAAACTTTTCCATAAAATCTGATGTCTATAGTTTCGGAGTGTTGATGCTAGAAATCCTAAGTGGAAGGAAAAACAATAGCTTCTACAATGATGACCATGCCATCAATATAGTTGGCTATGCATGGGCGTTATGGAGAGAAGTTGCAGGACTAAGACTAACGGATCCAAGACTTGGCGATTCATGTGATAAAAATCAATTCTTGAGGTACGTCCATGTTGGTATGCTCTGCGTGGAGGAAAATGCAGCCAATCGGCCCACGATGTTAGATGTGATATCTATGTTGGCTAATACAAAACCAAGATTGTGTACAGAAAGAAATGTGATCACAGCTGTTGTATGTAGGAATGGACCAGAAATTATTGCATCTGTAAATGGTATCTCCAATTCTGATTTTGATGGGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

175

Amino Acids

19.54

Weight (kDa)

5.7

Isoelectric Point (pI)

30.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 67 3.6e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 133 1.1e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 293
AclWI GGATC 2 cut(s) 278, 291
AcsI RAATTY 1 cut(s) 12
AcvI CACGTG 1 cut(s) 89
AfaI GTAC 2 cut(s) 329, 430
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 2 cut(s) 86, 96
AluBI AGCT 2 cut(s) 201, 452
AluI AGCT 2 cut(s) 201, 452
AlwI GGATC 2 cut(s) 278, 291
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 375, 470
AvaII GGWCC 1 cut(s) 470
BamHI GGATCC 1 cut(s) 283
BbrPI CACGTG 1 cut(s) 89
BbvI GCAGC 1 cut(s) 377
BccI CCATC 2 cut(s) 230, 512
BclI TGATCA 1 cut(s) 444
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 148
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 375, 470
BmiI GGNNCC 1 cut(s) 285
BmsI GCATC 2 cut(s) 156, 494
BpuEI CTTGAG 1 cut(s) 343
BsaAI YACGTR 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 312
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 377
BshFI GGCC 1 cut(s) 376
BslFI GGGAC 2 cut(s) 85, 97
BslI CCNNNNNNNGG 1 cut(s) 293
BsmFI GGGAC 2 cut(s) 85, 97
BsnI GGCC 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 428
Bsp143I GATC 2 cut(s) 283, 444
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 2 cut(s) 278, 291
BsrGI TGTACA 1 cut(s) 428
BssMI GATC 2 cut(s) 283, 444
BstAUI TGTACA 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 3 cut(s) 105, 179, 272
BstKTI GATC 2 cut(s) 286, 447
BstMBI GATC 2 cut(s) 283, 444
BstNSI RCATGY 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 375, 470
Csp6I GTAC 2 cut(s) 328, 429
CviAII CATG 5 cut(s) 97, 218, 243, 303, 335
CviJI RGCY 6 cut(s) 201, 237, 368, 376, 407, 452
CviKI_1 RGCY 6 cut(s) 201, 237, 368, 376, 407, 452
CviQI GTAC 2 cut(s) 328, 429
DdeI CTNAG 3 cut(s) 105, 179, 272
DpnI GATC 2 cut(s) 285, 446
DpnII GATC 2 cut(s) 283, 444
Eco32I GATATC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 470
Eco72I CACGTG 1 cut(s) 89
EcoRV GATATC 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 5 cut(s) 100, 221, 246, 306, 338
FaqI GGGAC 2 cut(s) 85, 97
FatI CATG 5 cut(s) 96, 217, 242, 302, 334
FbaI TGATCA 1 cut(s) 444
Fnu4HI GCNGC 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 366
HaeIII GGCC 1 cut(s) 376
Hin1II CATG 5 cut(s) 100, 221, 246, 306, 338
HinfI GANTC 2 cut(s) 4, 299
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 4 cut(s) 19, 142, 158, 511
Hpy188III TCNNGA 2 cut(s) 43, 322
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 1 cut(s) 180
HpyCH4IV ACGT 2 cut(s) 88, 330
HpyCH4V TGCA 4 cut(s) 242, 266, 365, 485
HpyF3I CTNAG 3 cut(s) 105, 179, 272
HpySE526I ACGT 2 cut(s) 88, 330
Hsp92II CATG 5 cut(s) 100, 221, 246, 306, 338
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 2 cut(s) 283, 444
LpnPI CCDG 3 cut(s) 117, 252, 486
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 2 cut(s) 156, 494
MaeI CTAG 1 cut(s) 170
MaeII ACGT 2 cut(s) 88, 330
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 285, 446
MboI GATC 2 cut(s) 283, 444
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 283
MluCI AATT 4 cut(s) 12, 317, 477, 505
MnlI CCTC 2 cut(s) 318, 349
Mph1103I ATGCAT 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 1 cut(s) 526
MspA1I CMGCKG 1 cut(s) 452
NdeII GATC 2 cut(s) 283, 444
NlaIII CATG 5 cut(s) 100, 221, 246, 306, 338
NlaIV GGNNCC 1 cut(s) 285
NsiI ATGCAT 1 cut(s) 244
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 4, 299
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 1 cut(s) 367
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 89
PscI ACATGT 1 cut(s) 96
PspCI CACGTG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 375, 470
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 329, 430
RsaNI GTAC 2 cut(s) 328, 429
SaqAI TTAA 1 cut(s) 526
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 2 cut(s) 283, 444
Sau96I GGNCC 2 cut(s) 375, 470
SetI ASST 5 cut(s) 91, 203, 329, 333, 454
SfaNI GCATC 2 cut(s) 156, 494
SfcI CTRYAG 1 cut(s) 148
SinI GGWCC 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 4 cut(s) 12, 317, 477, 505
SspMI CTAG 1 cut(s) 170
TaiI ACGT 2 cut(s) 91, 333
TasI AATT 4 cut(s) 12, 317, 477, 505
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 2 cut(s) 4, 299
Tru1I TTAA 1 cut(s) 526
Tru9I TTAA 1 cut(s) 526
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 4 cut(s) 17, 66, 86, 291
TspGWI ACGGA 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.