Rh5BG176300

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
18899189 .. 18900736
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG176300.1

Sequence Viewer

Length: 789 bp
ATGGTTAATGTGATGATCATGTTTGCTGGTTTTCAAGATCATCAGGAGAAAGCAAAGTACCTTCTGATCATTAACCATGGGTTTAGGTTTGATCAACTCTTAATTTTCTTCCTGATCATTCTTTCAAGCTTGTGGAGTTATCGTGTTGCTGCTGCAGCAGACAATATTCGGGACACACTCAAAATTGGCGACAGTCTCAATTCCTCAAGTGCTTTAGTTTCTGCCTCTGGGAAGTTCACTCTGCTTTTCTTGCCAAACGGTTCAAGTTCCAACTACAGTTCTGAAGATGGTGCATATGAGTTACCAGAATGGTTTCTAAATTTCGATGGGAGGCTTTCTAATTATTATGGAGCGGGAATTGATATTGCACGAGCAGATCAGTGTGGAGGCTACAGCACAGATGAACTAGGGTGCCAGACAAGTGGCCGGCCAACTACCTGTATGGCAGATTTCGGCAGTCCATTTGTGCCAAAAAAGGGTTATTTTCAACCAATCACCTCAAGTTCAACTTCAAGATGCCCATACTCGCTCAACTTTGTATCAAACGGAAGTTACAGTGGTACTAGTATTGATTGTAAGAATACTTGTTTGCAAAACTGTGACTGCCTTGGATTCGACTTTCTATTTGATAATCAGACAGGATGCCGATTTTGGAGTGTGGACTGTGAATTCGTTGAAGACCGCACTCAACCTGGTAATGCAAGCAGTTTGGTTTTAACAAAGCTAATGCCAACAGCAAAATCACCAGCGCCAAAGTCACCACCAAGCAAAAGTGGTAATCCCCACTAA

Protein Analysis

262

Amino Acids

28.68

Weight (kDa)

5.35

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 411
AccBSI CCGCTC 1 cut(s) 353
AciI CCGC 2 cut(s) 353, 682
AcoI YGGCCR 2 cut(s) 424, 428
AcsI RAATTY 2 cut(s) 319, 668
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 2 cut(s) 59, 562
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 7 cut(s) 35, 126, 264, 488, 507, 513, 677
AhlI ACTAGT 1 cut(s) 563
AjnI CCWGG 1 cut(s) 691
AluBI AGCT 2 cut(s) 129, 724
AluI AGCT 2 cut(s) 129, 724
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 2 cut(s) 424, 428
ApeKI GCWGC 3 cut(s) 149, 152, 155
ApoI RAATTY 2 cut(s) 319, 668
ArsI GACNNNNNNTTYG 4 cut(s) 608, 640, 653, 685
Asp700I GAANNNNTTC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 751
AsuHPI GGTGA 3 cut(s) 487, 735, 750
BanI GGYRCC 1 cut(s) 411
BauI CACGAG 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 136, 139, 167
BccI CCATC 2 cut(s) 281, 320
BciT130I CCWGG 1 cut(s) 693
BclI TGATCA 4 cut(s) 15, 66, 91, 114
BcoDI GTCTC 1 cut(s) 200
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 2 cut(s) 407, 564
BfmI CTRYAG 3 cut(s) 153, 274, 391
BfoI RGCGCY 1 cut(s) 752
BisI GCNGC 3 cut(s) 150, 153, 156
BlsI GCNGC 3 cut(s) 151, 154, 157
Bme1390I CCNGG 1 cut(s) 693
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 2 cut(s) 506, 632
BpiI GAAGAC 1 cut(s) 684
BpuEI CTTGAG 2 cut(s) 190, 484
BsaJI CCNNGG 2 cut(s) 76, 607
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse118I RCCGGY 1 cut(s) 426
BseBI CCWGG 1 cut(s) 693
BseDI CCNNGG 2 cut(s) 76, 607
BseGI GGATG 1 cut(s) 647
BseLI CCNNNNNNNGG 1 cut(s) 476
BseXI GCAGC 3 cut(s) 136, 139, 167
BshFI GGCC 2 cut(s) 426, 430
BshNI GGYRCC 1 cut(s) 411
BsiSI CCGG 1 cut(s) 427
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 2 cut(s) 426, 430
Bsp143I GATC 6 cut(s) 15, 37, 66, 91, 114, 376
Bsp19I CCATGG 1 cut(s) 76
BspACI CCGC 2 cut(s) 353, 682
BspANI GGCC 2 cut(s) 426, 430
BspLI GGNNCC 1 cut(s) 413
BspMAI CTGCAG 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 411
BsrBI CCGCTC 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 426
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 76, 607
BssMI GATC 6 cut(s) 15, 37, 66, 91, 114, 376
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 2 cut(s) 76, 607
Bst2BI CACGAG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 6 cut(s) 194, 260, 278, 557, 599, 665
BstC8I GCNNGC 2 cut(s) 428, 703
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 647
BstH2I RGCGCY 1 cut(s) 752
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 6 cut(s) 18, 40, 69, 94, 117, 379
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 6 cut(s) 15, 37, 66, 91, 114, 376
BstMWI GCNNNNNNNGC 2 cut(s) 155, 250
BstNI CCWGG 1 cut(s) 693
BstSCI CCNGG 1 cut(s) 691
BstSFI CTRYAG 3 cut(s) 153, 274, 391
BstV1I GCAGC 3 cut(s) 136, 139, 167
BstV2I GAAGAC 1 cut(s) 684
BstXI CCANNNNNNTGG 1 cut(s) 422
BsuRI GGCC 2 cut(s) 426, 430
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 647
BtsIMutI CAGTG 2 cut(s) 386, 562
Cac8I GCNNGC 2 cut(s) 428, 703
CfoI GCGC 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 426
CsiI ACCWGGT 1 cut(s) 691
Csp6I GTAC 2 cut(s) 58, 561
CviAII CATG 2 cut(s) 19, 77
CviJI RGCY 6 cut(s) 129, 334, 390, 426, 430, 724
CviKI_1 RGCY 6 cut(s) 129, 334, 390, 426, 430, 724
CviQI GTAC 2 cut(s) 58, 561
DpnI GATC 6 cut(s) 17, 39, 68, 93, 116, 378
DpnII GATC 6 cut(s) 15, 37, 66, 91, 114, 376
EaeI YGGCCR 2 cut(s) 424, 428
Eco130I CCWWGG 2 cut(s) 76, 607
Eco57I CTGAAG 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 691
EcoT14I CCWWGG 2 cut(s) 76, 607
ErhI CCWWGG 2 cut(s) 76, 607
FaeI CATG 2 cut(s) 22, 80
FaiI YATR 7 cut(s) 20, 78, 295, 297, 348, 443, 523
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FaqI GGGAC 1 cut(s) 185
FatI CATG 2 cut(s) 18, 76
FauI CCCGC 1 cut(s) 346
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 4 cut(s) 15, 66, 91, 114
Fnu4HI GCNGC 3 cut(s) 150, 153, 156
FokI GGATG 1 cut(s) 654
FseI GGCCGGCC 1 cut(s) 430
Fsp4HI GCNGC 3 cut(s) 150, 153, 156
FspBI CTAG 2 cut(s) 407, 564
GlaI GCGC 1 cut(s) 750
GluI GCNGC 3 cut(s) 150, 153, 156
HaeII RGCGCY 1 cut(s) 752
HaeIII GGCC 2 cut(s) 426, 430
HapII CCGG 1 cut(s) 427
HhaI GCGC 1 cut(s) 751
Hin1II CATG 2 cut(s) 22, 80
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 1 cut(s) 612
HpaII CCGG 1 cut(s) 427
HphI GGTGA 3 cut(s) 487, 735, 750
Hpy166II GTNNAC 2 cut(s) 237, 661
Hpy188I TCNGA 3 cut(s) 66, 283, 636
Hpy188III TCNNGA 5 cut(s) 35, 44, 112, 170, 513
Hpy8I GTNNAC 2 cut(s) 237, 661
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 6 cut(s) 194, 260, 278, 557, 599, 665
HpyCH4V TGCA 5 cut(s) 155, 293, 368, 592, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 250
Hsp92II CATG 2 cut(s) 22, 80
HspAI GCGC 1 cut(s) 749
KroI GCCGGC 1 cut(s) 426
KroNI GCCGGC 1 cut(s) 428
Ksp22I TGATCA 4 cut(s) 15, 66, 91, 114
Kzo9I GATC 6 cut(s) 15, 37, 66, 91, 114, 376
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 3 cut(s) 136, 139, 167
LweI GCATC 2 cut(s) 506, 632
MabI ACCWGGT 1 cut(s) 691
MaeI CTAG 2 cut(s) 407, 564
MaeIII GTNAC 4 cut(s) 300, 551, 599, 756
MalI GATC 6 cut(s) 17, 39, 68, 93, 116, 378
MbiI CCGCTC 1 cut(s) 353
MboI GATC 6 cut(s) 15, 37, 66, 91, 114, 376
MboII GAAGA 3 cut(s) 100, 296, 689
MluCI AATT 7 cut(s) 102, 183, 199, 319, 340, 357, 668
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 214, 235, 324, 380, 508
MroNI GCCGGC 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 4 cut(s) 6, 72, 101, 716
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 693
MvaI CCWGG 1 cut(s) 693
MwoI GCNNNNNNNGC 2 cut(s) 155, 250
NaeI GCCGGC 1 cut(s) 428
NcoI CCATGG 1 cut(s) 76
NdeI CATATG 1 cut(s) 295
NdeII GATC 6 cut(s) 15, 37, 66, 91, 114, 376
NgoMIV GCCGGC 1 cut(s) 426
NlaIII CATG 2 cut(s) 22, 80
NlaIV GGNNCC 1 cut(s) 413
NmuCI GTSAC 2 cut(s) 599, 756
PdiI GCCGGC 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 612
PkrI GCNGC 3 cut(s) 151, 154, 157
Psp6I CCWGG 1 cut(s) 691
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 1 cut(s) 413
PstI CTGCAG 1 cut(s) 157
RigI GGCCGGCC 1 cut(s) 430
RsaI GTAC 2 cut(s) 59, 562
RsaNI GTAC 2 cut(s) 58, 561
SaqAI TTAA 4 cut(s) 6, 72, 101, 716
SatI GCNGC 3 cut(s) 150, 153, 156
Sau3AI GATC 6 cut(s) 15, 37, 66, 91, 114, 376
ScrFI CCNGG 1 cut(s) 693
SetI ASST 7 cut(s) 63, 89, 131, 440, 500, 694, 726
SexAI ACCWGGT 1 cut(s) 691
SfaNI GCATC 2 cut(s) 506, 632
SfcI CTRYAG 3 cut(s) 153, 274, 391
SmlI CTYRAG 2 cut(s) 205, 499
SmoI CTYRAG 2 cut(s) 205, 499
SpeI ACTAGT 1 cut(s) 563
Sse9I AATT 7 cut(s) 102, 183, 199, 319, 340, 357, 668
SsiI CCGC 2 cut(s) 353, 682
SspI AATATT 1 cut(s) 166
SspMI CTAG 2 cut(s) 407, 564
StyD4I CCNGG 1 cut(s) 691
StyI CCWWGG 2 cut(s) 76, 607
TaaI ACNGT 6 cut(s) 194, 260, 278, 557, 599, 665
TaqI TCGA 2 cut(s) 324, 615
TasI AATT 7 cut(s) 102, 183, 199, 319, 340, 357, 668
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 4 cut(s) 6, 72, 101, 716
Tru9I TTAA 4 cut(s) 6, 72, 101, 716
TscAI CASTG 2 cut(s) 386, 562
TseFI GTSAC 2 cut(s) 599, 756
TseI GCWGC 3 cut(s) 149, 152, 155
Tsp45I GTSAC 2 cut(s) 599, 756
TspDTI ATGAA 1 cut(s) 417
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 2 cut(s) 386, 562
XapI RAATTY 2 cut(s) 319, 668
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 2 cut(s) 407, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.