Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000096

Physical Location & Seq

Genomic Coordinates Forward (+)

19181690 .. 19182073

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG192600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTCAAACTTGTAGTGGTGCTGAAAACACTGGGGACTCACTAAAATCAGGAGACATTCACAATTCTACAAGTAGCTTAGTTTCTTCTTCTGGGAAATTCACTTTTGAATTCTGGACAAATGGTACCATCTCCAGCAACCTAGTTACACTGCACGGTAATGGTCCAAACCAAGCATGGGTTGCCAACCGACACATGCCTATTCCATATCCAACGGGAGTTCTTTCCTTGGACATGAACAACACATTGAAAATCACAACCCAAAAAGGTGGTGATCCCCCTATAGTGCTTCACTCGGCTTCGAAATGTATTAGCGTTAATGTAGCTACCCTTTTGGATTCTGGTAATTTTGTCCTACAAGAAGTGAACTCTAACCAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

127

Amino Acids

13.42

Weight (kDa)

6.0

Isoelectric Point (pI)

16.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	60 - 124	8e-09	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000096)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica	MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica	Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis	pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis	RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata	RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora	Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa	Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha	Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana	Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	98, 110
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	110, 250
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	2 cut(s)	78, 326
AluI	AGCT	2 cut(s)	78, 326
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	98, 110
Asp718I	GGTACC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	125
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	377
BmrI	ACTGGG	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	269
BspT104I	TTCGAA	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	269
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	2 cut(s)	30, 149
Cfr13I	GGNCC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	3 cut(s)	177, 196, 235
CviJI	RGCY	4 cut(s)	5, 78, 299, 326
CviKI_1	RGCY	4 cut(s)	5, 78, 299, 326
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	3 cut(s)	180, 199, 238
FaiI	YATR	5 cut(s)	178, 197, 208, 236, 284
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	3 cut(s)	176, 195, 234
FspBI	CTAG	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	118
Hin1II	CATG	3 cut(s)	180, 199, 238
HinfI	GANTC	2 cut(s)	38, 338
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188III	TCNNGA	2 cut(s)	51, 115
Hpy8I	GTNNAC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	180, 199, 238
KpnI	GGTACC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	7 cut(s)	18, 36, 78, 100, 148, 327, 362
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	2 cut(s)	78, 81
MluCI	AATT	4 cut(s)	64, 98, 110, 346
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	236
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	3 cut(s)	180, 199, 238
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	275
NspI	RCATGY	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	377
SetI	ASST	5 cut(s)	80, 144, 271, 328, 381
SexAI	ACCWGGT	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	302
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	4 cut(s)	64, 98, 110, 346
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	302
TasI	AATT	4 cut(s)	64, 98, 110, 346
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	37, 156
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	37, 156
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	98, 110
XceI	RCATGY	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.