RchiOBHm_Chr5g0025011

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
19023912 .. 19024837
926 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30470

Sequence Viewer

Length: 585 bp
ATGAGTACATCCCAAACAAAAGTTTGGACTACTACTTATTTGGTTAGCAAAACTAAACTTAATTCAACAAGAGGCATGTTCCTTGACTGGAAGAAGCGTTTCAATATAATTGAAGGAGTTGCTCAAGGATTAATTTACTTGCACAAATACTCAAGATTGAGGGTGATTCATAGAGATTTAAAAGCTAGTAATGTCCTGCTTGATGAAAATATGAACCCTAAAATTTCCGACTTTGGTATGACAAAAATCTTCACGCATAATGAAATGGAAGCAAATAATAGTAGGATTGGAATTTTTTCTCTAAAAACTGACGTCTACAGTTTTGGAGTATTACTGCTTGAGATCATAAGTGGGAGGAAAAGCAATAGCTTCTACAATGATGACCATGTGCTCAATATACTAGGATATGCATGGAGATTATGGAAAGTCGGTACATGGATAGAACTAATGGATCCAACATTAGGCGATTCATGTAATAGGAATCAATTTCTAAGATGTGTCCATGTTGGTCTACTATGCGTTGAGGAAAATGGAGAGGATCGGCCGACTCTGTTAGCTAGAAGTGATACACACATTGATGAATGA

Protein Analysis

194

Amino Acids

22.41

Weight (kDa)

8.41

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 24 - 120 6.1e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 27 - 134 3e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AccI GTMKAC 2 cut(s) 315, 511
AclWI GGATC 3 cut(s) 446, 459, 546
AcoI YGGCCR 1 cut(s) 542
AcsI RAATTY 2 cut(s) 222, 291
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 2 cut(s) 7, 433
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 3 cut(s) 66, 103, 113
AluBI AGCT 3 cut(s) 185, 369, 557
AluI AGCT 3 cut(s) 185, 369, 557
Alw21I GWGCWC 1 cut(s) 393
AlwI GGATC 3 cut(s) 446, 459, 546
AoxI GGCC 1 cut(s) 542
ApoI RAATTY 2 cut(s) 222, 291
AseI ATTAAT 1 cut(s) 131
Asp700I GAANNNNTTC 2 cut(s) 98, 295
AsuHPI GGTGA 1 cut(s) 175
BamHI GGATCC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 393
BfaI CTAG 3 cut(s) 186, 401, 558
BfmI CTRYAG 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 453
BpuEI CTTGAG 3 cut(s) 108, 136, 359
BsaHI GRCGYC 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 461
BseNI ACTGG 1 cut(s) 92
BseX3I CGGCCG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 545
BshFI GGCC 1 cut(s) 544
BsiEI CGRYCG 1 cut(s) 545
BsiHKAI GWGCWC 1 cut(s) 393
BslI CCNNNNNNNGG 1 cut(s) 461
BsnI GGCC 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 3 cut(s) 342, 451, 538
BspANI GGCC 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 453
BspPI GGATC 3 cut(s) 446, 459, 546
BsrI ACTGG 1 cut(s) 92
BssMI GATC 3 cut(s) 342, 451, 538
BssNI GRCGYC 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 320
BstACI GRCGYC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 491
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 3 cut(s) 345, 454, 541
BstMBI GATC 3 cut(s) 342, 451, 538
BstMCI CGRYCG 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BstZI CGGCCG 1 cut(s) 542
BsuRI GGCC 1 cut(s) 544
BtsCI GGATG 1 cut(s) 8
Csp6I GTAC 2 cut(s) 6, 432
CviAII CATG 6 cut(s) 76, 386, 411, 435, 471, 503
CviJI RGCY 4 cut(s) 185, 369, 544, 557
CviKI_1 RGCY 4 cut(s) 185, 369, 544, 557
CviQI GTAC 2 cut(s) 6, 432
DdeI CTNAG 1 cut(s) 491
DpnI GATC 3 cut(s) 344, 453, 540
DpnII GATC 3 cut(s) 342, 451, 538
DraI TTTAAA 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 542
EagI CGGCCG 1 cut(s) 542
EclXI CGGCCG 1 cut(s) 542
Eco52I CGGCCG 1 cut(s) 542
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 6 cut(s) 79, 389, 414, 438, 474, 506
FatI CATG 6 cut(s) 75, 385, 410, 434, 470, 502
FblI GTMKAC 2 cut(s) 315, 511
FspBI CTAG 3 cut(s) 186, 401, 558
HaeIII GGCC 1 cut(s) 544
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 6 cut(s) 79, 389, 414, 438, 474, 506
HinfI GANTC 4 cut(s) 166, 467, 481, 547
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 316, 512
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 2 cut(s) 316, 512
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 142, 410
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 6 cut(s) 79, 389, 414, 438, 474, 506
Kzo9I GATC 3 cut(s) 342, 451, 538
LpnPI CCDG 2 cut(s) 73, 209
MaeI CTAG 3 cut(s) 186, 401, 558
MaeII ACGT 1 cut(s) 312
MalI GATC 3 cut(s) 344, 453, 540
MboI GATC 3 cut(s) 342, 451, 538
MboII GAAGA 2 cut(s) 103, 241
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 6 cut(s) 61, 108, 132, 222, 291, 485
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 2 cut(s) 252, 479
MnlI CCTC 5 cut(s) 65, 153, 348, 517, 529
Mph1103I ATGCAT 1 cut(s) 412
MroXI GAANNNNTTC 2 cut(s) 98, 295
MseI TTAA 3 cut(s) 60, 131, 179
MslI CAYNNNNRTG 1 cut(s) 576
NdeII GATC 3 cut(s) 342, 451, 538
NlaIII CATG 6 cut(s) 79, 389, 414, 438, 474, 506
NlaIV GGNNCC 1 cut(s) 453
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 1 cut(s) 79
PdmI GAANNNNTTC 2 cut(s) 98, 295
PfeI GAWTC 3 cut(s) 166, 467, 481
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PshBI ATTAAT 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 453
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 2 cut(s) 7, 433
RsaNI GTAC 2 cut(s) 6, 432
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 3 cut(s) 60, 131, 179
Sau3AI GATC 3 cut(s) 342, 451, 538
SchI GAGTC 1 cut(s) 541
SduI GDGCHC 1 cut(s) 393
SetI ASST 4 cut(s) 187, 315, 371, 559
SfcI CTRYAG 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 3 cut(s) 123, 151, 338
SmoI CTYRAG 3 cut(s) 123, 151, 338
Sse9I AATT 6 cut(s) 61, 108, 132, 222, 291, 485
SspMI CTAG 3 cut(s) 186, 401, 558
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 315
TasI AATT 6 cut(s) 61, 108, 132, 222, 291, 485
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 3 cut(s) 166, 467, 481
Tru1I TTAA 3 cut(s) 60, 131, 179
Tru9I TTAA 3 cut(s) 60, 131, 179
TspDTI ATGAA 5 cut(s) 158, 219, 227, 276, 459
VspI ATTAAT 1 cut(s) 131
XapI RAATTY 2 cut(s) 222, 291
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 2 cut(s) 315, 511
XmnI GAANNNNTTC 2 cut(s) 98, 295
XspI CTAG 3 cut(s) 186, 401, 558
ZraI GACGTC 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.