RchiOBHm_Chr5g0025551

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000096
Physical Location & Seq
Forward (+)
19452471 .. 19454191
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30519

Sequence Viewer

Length: 1017 bp
ATGCATCGCATAAGTGGATATGGATTGGTTTTGCAATTGTGGCTGCTCTTATGGGAATCGTGCTTTGTAGCATGTGCTACCTACGACGAAGAAGAAAACTTGCAGGGGAAATTGGTGACCGGACAAGAAATAGCAGTGAAGAGGCTTTCAAAGCGTTCAGGCCAAGGAATATTGGAGTTTAAGAATGAATTGATACTTATATATGAACTTCAGCATACAAACCTTGTTCAGCTCTTCGGATTTTGCATTTATGGTGAAGAGAGGATGTTGATATATGAGTACATGGCAAACAAAAGCTTGGACTACTTTTTATTTGATTCAACCAGATGCCAGCAACTAGATTGGAACAAACGTTTCAGCATAATTGAAGGAGTCGCTCAAGGTTTGCTTTACTTGCACAAATATTCCAGAAAGAGAGTAATTCATAGAGATTTAAAAGCAAGTAATGTTCTACTTGATGAAAACATGAATCCCAAAATTTTTGATTTTGGAATGGCAAGGATTTTCACGAATGATGAACAAGAAGCAAATACTATGAAGATTGTTGGGACATGTGGTTACATGTCCCCTGAGTATGTTATGGGGGGAAAATTTTCCATAAAATCTGATGTCTATAGTTTCGGAGTGTTGATGCTAGAAATCCTAAGTGGAAGGAAAAACAGCAGCTTCTACAATGATGACCATGCTATCAATATAGTTGGCTATGCATGGGCGTTATGGAGAGACGGTGCAGGACTAAGACTAATGGATCCAAGACTTGGCGATTCATGTGATAAAAATCAATTCTTGAGGTGCATCCATGTTGGTATGCTCTGCGTGGAGGAAAATGCAGCCAATCGACCCATGATGTTAGATGTGATATCTATGTTGGCTAATGAAAGCATATCACTACCAGTACTTACAAAACCAGCATTCTGTACAGAAAGAAATGTGATCACAACTGCTGTAGGTGGGAATGGACCAGAAATTATTACATCTGTAAATGGTATCTCCAATTCTGATTTTGATGGGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

338

Amino Acids

38.4

Weight (kDa)

5.62

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 40 - 222 2.7e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 40 - 222 2.1e-38 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 758
AclI AACGTT 1 cut(s) 352
AclWI GGATC 2 cut(s) 743, 756
AcsI RAATTY 2 cut(s) 477, 590
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 3 cut(s) 281, 897, 919
AfiI CCNNNNNNNGG 1 cut(s) 758
AflIII ACRYGT 2 cut(s) 551, 561
AgsI TTSAA 3 cut(s) 150, 321, 368
AluBI AGCT 3 cut(s) 232, 297, 666
AluI AGCT 3 cut(s) 232, 297, 666
Alw26I GTCTC 1 cut(s) 717
AlwI GGATC 2 cut(s) 743, 756
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 3 cut(s) 43, 663, 830
ApoI RAATTY 2 cut(s) 477, 590
Asp700I GAANNNNTTC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 959
AsuHPI GGTGA 2 cut(s) 127, 266
AvaII GGWCC 1 cut(s) 959
BamHI GGATCC 1 cut(s) 748
BbvI GCAGC 3 cut(s) 30, 675, 842
BccI CCATC 1 cut(s) 1001
BclI TGATCA 1 cut(s) 933
BcoDI GTCTC 1 cut(s) 717
BfaI CTAG 2 cut(s) 338, 635
BfmI CTRYAG 2 cut(s) 613, 945
BisI GCNGC 3 cut(s) 44, 664, 831
BlsI GCNGC 3 cut(s) 45, 665, 832
BmcAI AGTACT 1 cut(s) 897
Bme18I GGWCC 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 959
BmiI GGNNCC 1 cut(s) 750
BmsI GCATC 4 cut(s) 13, 317, 621, 804
BpuEI CTTGAG 2 cut(s) 363, 808
BsaBI GATNNNNATC 1 cut(s) 777
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse1I ACTGG 1 cut(s) 893
Bse8I GATNNNNATC 1 cut(s) 777
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 2 cut(s) 270, 795
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMII CTCAG 1 cut(s) 561
BseNI ACTGG 1 cut(s) 893
BseXI GCAGC 3 cut(s) 30, 675, 842
BsgI GTGCAG 1 cut(s) 750
BshFI GGCC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 2 cut(s) 550, 562
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 1 cut(s) 717
BsmBI CGTCTC 1 cut(s) 717
BsmFI GGGAC 2 cut(s) 550, 562
BsmI GAATGC 1 cut(s) 911
BsnI GGCC 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 917
Bsp143I GATC 2 cut(s) 748, 933
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 750
BspPI GGATC 2 cut(s) 743, 756
BspQI GCTCTTC 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 917
BsrI ACTGG 1 cut(s) 893
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 748, 933
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 728
Bst6I CTCTTC 3 cut(s) 134, 239, 252
BstAUI TGTACA 1 cut(s) 917
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 3 cut(s) 570, 644, 737
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 2 cut(s) 270, 795
BstKTI GATC 2 cut(s) 751, 936
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 2 cut(s) 748, 933
BstMWI GCNNNNNNNGC 3 cut(s) 40, 151, 394
BstNSI RCATGY 3 cut(s) 75, 555, 565
BstPI GGTNACC 1 cut(s) 115
BstSFI CTRYAG 2 cut(s) 613, 945
BstV1I GCAGC 3 cut(s) 30, 675, 842
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 2 cut(s) 270, 795
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 959
Csp6I GTAC 3 cut(s) 280, 896, 918
CviJI RGCY 9 cut(s) 43, 145, 162, 232, 297, 666, 702, 833, 872
CviKI_1 RGCY 9 cut(s) 43, 145, 162, 232, 297, 666, 702, 833, 872
CviQI GTAC 3 cut(s) 280, 896, 918
DdeI CTNAG 3 cut(s) 570, 644, 737
DpnI GATC 2 cut(s) 750, 935
DpnII GATC 2 cut(s) 748, 933
DraI TTTAAA 1 cut(s) 435
Eam1104I CTCTTC 3 cut(s) 134, 239, 252
EarI CTCTTC 3 cut(s) 134, 239, 252
Eco130I CCWWGG 1 cut(s) 163
Eco32I GATATC 1 cut(s) 861
Eco47I GGWCC 1 cut(s) 959
Eco57I CTGAAG 1 cut(s) 194
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
EcoRV GATATC 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 2 cut(s) 6, 709
ErhI CCWWGG 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 717
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FaqI GGGAC 2 cut(s) 550, 562
FbaI TGATCA 1 cut(s) 933
Fnu4HI GCNGC 3 cut(s) 44, 664, 831
FokI GGATG 2 cut(s) 277, 782
Fsp4HI GCNGC 3 cut(s) 44, 664, 831
FspBI CTAG 2 cut(s) 338, 635
GluI GCNGC 3 cut(s) 44, 664, 831
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 295
HinfI GANTC 5 cut(s) 56, 317, 372, 469, 764
HpaII CCGG 1 cut(s) 120
HphI GGTGA 2 cut(s) 127, 266
Hpy188I TCNGA 4 cut(s) 239, 607, 623, 1000
Hpy188III TCNNGA 3 cut(s) 408, 508, 787
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 362, 645
HpyCH4III ACNGT 1 cut(s) 728
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 9 cut(s) 4, 34, 103, 246, 397, 707, 731, 795, 830
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 151, 394
HpyF3I CTNAG 3 cut(s) 570, 644, 737
HpySE526I ACGT 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 933
Kzo9I GATC 2 cut(s) 748, 933
LguI GCTCTTC 1 cut(s) 239
Lsp1109I GCAGC 3 cut(s) 30, 675, 842
LweI GCATC 4 cut(s) 13, 317, 621, 804
MaeI CTAG 2 cut(s) 338, 635
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 115, 557
MalI GATC 2 cut(s) 750, 935
MboI GATC 2 cut(s) 748, 933
MboII GAAGA 6 cut(s) 101, 104, 151, 226, 269, 550
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 748
MlyI GAGTC 1 cut(s) 381
MnlI CCTC 4 cut(s) 135, 255, 783, 814
Mph1103I ATGCAT 2 cut(s) 6, 709
MroXI GAANNNNTTC 1 cut(s) 592
MseI TTAA 3 cut(s) 180, 434, 1015
MspI CCGG 1 cut(s) 120
MunI CAATTG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 911
MwoI GCNNNNNNNGC 3 cut(s) 40, 151, 394
NdeII GATC 2 cut(s) 748, 933
NlaIV GGNNCC 1 cut(s) 750
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 2 cut(s) 6, 709
NspI RCATGY 3 cut(s) 75, 555, 565
PciI ACATGT 2 cut(s) 551, 561
PciSI GCTCTTC 1 cut(s) 239
PctI GAATGC 1 cut(s) 911
PdmI GAANNNNTTC 1 cut(s) 592
PfeI GAWTC 4 cut(s) 56, 317, 469, 764
PflMI CCANNNNNTGG 1 cut(s) 758
PkrI GCNGC 3 cut(s) 45, 665, 832
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PscI ACATGT 2 cut(s) 551, 561
Psp1406I AACGTT 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 1 cut(s) 959
PsuI RGATCY 1 cut(s) 748
RsaI GTAC 3 cut(s) 281, 897, 919
RsaNI GTAC 3 cut(s) 280, 896, 918
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 3 cut(s) 180, 434, 1015
SatI GCNGC 3 cut(s) 44, 664, 831
Sau3AI GATC 2 cut(s) 748, 933
Sau96I GGNCC 1 cut(s) 959
ScaI AGTACT 1 cut(s) 897
SchI GAGTC 1 cut(s) 381
SetI ASST 9 cut(s) 83, 225, 234, 299, 355, 385, 668, 794, 952
SfaNI GCATC 4 cut(s) 13, 317, 621, 804
SfcI CTRYAG 2 cut(s) 613, 945
SinI GGWCC 1 cut(s) 959
SmlI CTYRAG 2 cut(s) 378, 787
SmoI CTYRAG 2 cut(s) 378, 787
SspI AATATT 2 cut(s) 171, 404
SspMI CTAG 2 cut(s) 338, 635
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 728
TaiI ACGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 838
TatI WGTACW 3 cut(s) 279, 895, 917
TfiI GAWTC 4 cut(s) 56, 317, 469, 764
Tru1I TTAA 3 cut(s) 180, 434, 1015
Tru9I TTAA 3 cut(s) 180, 434, 1015
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 3 cut(s) 43, 663, 830
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 9 cut(s) 201, 219, 413, 474, 482, 531, 551, 756, 891
TspRI CASTG 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 959
XapI RAATTY 2 cut(s) 477, 590
XceI RCATGY 3 cut(s) 75, 555, 565
XmnI GAANNNNTTC 1 cut(s) 592
XspI CTAG 2 cut(s) 338, 635
ZrmI AGTACT 1 cut(s) 897
Zsp2I ATGCAT 2 cut(s) 6, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.