RLG00000032828

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000096
Physical Location & Seq
Forward (+)
19507309 .. 19511068
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032828

Sequence Viewer

Length: 1161 bp
ATGGCCAATTATTCCAAGGTTGATTTTTGTGTACCAAAGCCATTGACGGCTTTCAAGTCGGTTGGGTTTGGGAACTACACATTGAAGATTACTCAAAGAGGTGAGGATGCTGTGGTGCTTTACTCTGGTGATTCGGAGACCATCAGTGGTGATGTTGTGGCTACTCTTATGGATGATGGGAATTTTGTGCTGCAAGAAGTGAGTGATGATGGATCGGTGAAGAGGGATTTGTGGCAGAGTTTTGATTATCCTGGGGATGTGCTTCTGCCAGGGCGAGAAGTAGCTATAAAGAGTCTTTCAAGAGGTTCGGTGCAGGGAACATCAGAGTTTAAAAATGAATTGATACTCATATCTGAACTGCAACATACTAACCTTGTTCAGCTCTTGGGATATTGCATTCGTGGTGTAGAGAGGATGTTAATATACGAGTATCTGCCAAACAAAAGTTTAGACTACATCTTATTTGATTCAACCAGAGGCATGCTACTAGATTGGAAGAAGCGTTTCAATATAATTGAAGGAATTGCTCAAGGATTGATTTACTTGCACAAATACTCAAGATTGAAAGTAATTCATAGAGATCTGAAAGCTAGTAACATACTACTTGATGAAAATATGAATCCCAAAATTTCTGATTTTGGTATGGCAAGGATTTTCACGGTTAATGAAGTTGAAGCAAATACTAATCGGATCGTTGGCACATATGGTTACATGTCTCCTGAGTATGCTATGGAGGGAATTTTTTCTGGAAAATCTGATGTCTTTAGTTTTGGAGTGTTGATGCTTGAAATCATAAGTGGTAGGAGAAACAACAGCTTCCACAATGCTCATCGCTCGCTCAATTTAGTAGGATATACATGGGAGTTATGGAAAGAAGGTGCAGGAGTAGATTTAATGGATCCAAGGCTAAGCGATTCATGTAATAGAGATCAACTGCTAAGATGCATACATGTTGGCCTATTATGCGTGGAAGAAGATGCAGAACATCGGCCAACCATGTCAGATGCCATATCACTGTTGACAAATGAAAGCTTGCCATTACCTACACCAACAAAACCAGCATTTTTCCCAGTAAGACGTGTGGCTGAAGTTGATGTAAGTGGAAGCAAATCAGAAATTTCATCAAATGACTTGTCAAACTCCTTTGTTATTGGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

387

Amino Acids

43.27

Weight (kDa)

5.31

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 28 - 101 2.1e-11 D-mannose binding lectin
Pkinase PF00069 91 - 278 3.4e-36 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 92 - 335 7.3e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 220, 698, 893, 906
AcoI YGGCCR 2 cut(s) 3, 989
AcsI RAATTY 4 cut(s) 181, 627, 738, 1116
AcuI CTGAAG 1 cut(s) 1107
AfaI GTAC 1 cut(s) 33
AflIII ACRYGT 3 cut(s) 711, 949, 1078
AgsI TTSAA 9 cut(s) 55, 85, 300, 471, 508, 518, 565, 674, 788
AjiI CACGTC 1 cut(s) 1079
AjnI CCWGG 2 cut(s) 250, 268
AluBI AGCT 5 cut(s) 284, 382, 590, 816, 1032
AluI AGCT 5 cut(s) 284, 382, 590, 816, 1032
Alw26I GTCTC 2 cut(s) 131, 720
AlwI GGATC 4 cut(s) 220, 698, 893, 906
AoxI GGCC 3 cut(s) 3, 955, 989
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 4 cut(s) 181, 627, 738, 1116
ArsI GACNNNNNNTTYG 2 cut(s) 1118, 1150
Asp700I GAANNNNTTC 2 cut(s) 503, 742
AsuHPI GGTGA 4 cut(s) 113, 140, 161, 229
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 898
BbvI GCAGC 1 cut(s) 177
BccI CCATC 3 cut(s) 149, 170, 203
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 2 cut(s) 252, 270
BcoDI GTCTC 2 cut(s) 131, 720
BfaI CTAG 2 cut(s) 488, 591
BglII AGATCT 1 cut(s) 580
BisI GCNGC 1 cut(s) 191
BlpI GCTNAGC 1 cut(s) 908
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 2 cut(s) 252, 270
BmgBI CACGTC 1 cut(s) 1079
BmiI GGNNCC 1 cut(s) 900
BmrFI CCNGG 2 cut(s) 252, 270
BmrI ACTGGG 1 cut(s) 1064
BmsI GCATC 5 cut(s) 97, 771, 932, 967, 994
BmuI ACTGGG 1 cut(s) 1064
Bpu1102I GCTNAGC 1 cut(s) 908
BpuEI CTTGAG 2 cut(s) 513, 541
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 4 cut(s) 15, 251, 269, 902
Bse1I ACTGG 1 cut(s) 1070
BseBI CCWGG 2 cut(s) 252, 270
BseDI CCNNGG 4 cut(s) 15, 251, 269, 902
BseGI GGATG 4 cut(s) 112, 178, 262, 420
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 1 cut(s) 1070
BseXI GCAGC 1 cut(s) 177
BsgI GTGCAG 2 cut(s) 332, 900
BshFI GGCC 3 cut(s) 5, 957, 991
BsmAI GTCTC 2 cut(s) 131, 720
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 3 cut(s) 5, 957, 991
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 5 cut(s) 212, 580, 690, 898, 928
Bsp1720I GCTNAGC 1 cut(s) 908
BspANI GGCC 3 cut(s) 5, 957, 991
BspCNI CTCAG 1 cut(s) 712
BspLI GGNNCC 1 cut(s) 900
BspPI GGATC 4 cut(s) 220, 698, 893, 906
BspTNI GGTCTC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 1070
BssECI CCNNGG 4 cut(s) 15, 251, 269, 902
BssMI GATC 5 cut(s) 212, 580, 690, 898, 928
BssT1I CCWWGG 2 cut(s) 15, 902
Bst2UI CCWGG 2 cut(s) 252, 270
Bst4CI ACNGT 2 cut(s) 661, 1017
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 3 cut(s) 482, 836, 1034
BstDEI CTNAG 3 cut(s) 720, 908, 938
BstF5I GGATG 4 cut(s) 112, 178, 262, 420
BstKTI GATC 5 cut(s) 215, 583, 693, 901, 931
BstMAI GTCTC 2 cut(s) 131, 720
BstMBI GATC 5 cut(s) 212, 580, 690, 898, 928
BstMWI GCNNNNNNNGC 1 cut(s) 963
BstNI CCWGG 2 cut(s) 252, 270
BstNSI RCATGY 3 cut(s) 484, 715, 953
BstSCI CCNGG 2 cut(s) 250, 268
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 580, 898
BstYI RGATCY 2 cut(s) 580, 898
BsuRI GGCC 3 cut(s) 5, 957, 991
BtgZI GCGATG 1 cut(s) 815
BtrI CACGTC 1 cut(s) 1079
BtsCI GGATG 4 cut(s) 112, 178, 262, 420
BtsIMutI CAGTG 2 cut(s) 151, 1013
Cac8I GCNNGC 3 cut(s) 482, 836, 1034
Csp6I GTAC 1 cut(s) 32
CviAII CATG 6 cut(s) 481, 712, 858, 918, 950, 997
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 3 cut(s) 720, 908, 938
DpnI GATC 5 cut(s) 214, 582, 692, 900, 930
DpnII GATC 5 cut(s) 212, 580, 690, 898, 928
DraI TTTAAA 1 cut(s) 331
EaeI YGGCCR 2 cut(s) 3, 989
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 2 cut(s) 15, 902
Eco31I GGTCTC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 1107
EcoRII CCWGG 2 cut(s) 250, 268
EcoT14I CCWWGG 2 cut(s) 15, 902
EcoT22I ATGCAT 1 cut(s) 947
ErhI CCWWGG 2 cut(s) 15, 902
FaeI CATG 6 cut(s) 484, 715, 861, 921, 953, 1000
FatI CATG 6 cut(s) 480, 711, 857, 917, 949, 996
FauNDI CATATG 1 cut(s) 703
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 4 cut(s) 119, 185, 269, 427
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 2 cut(s) 488, 591
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 3 cut(s) 5, 957, 991
Hin1II CATG 6 cut(s) 484, 715, 861, 921, 953, 1000
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HindIII AAGCTT 1 cut(s) 1030
HinfI GANTC 5 cut(s) 131, 292, 467, 619, 914
HphI GGTGA 4 cut(s) 113, 140, 161, 229
Hpy166II GTNNAC 2 cut(s) 32, 1020
Hpy188I TCNGA 9 cut(s) 136, 325, 355, 585, 634, 690, 757, 1003, 1114
Hpy188III TCNNGA 4 cut(s) 300, 558, 719, 747
Hpy8I GTNNAC 2 cut(s) 32, 1020
HpyAV CCTTC 2 cut(s) 512, 869
HpyCH4III ACNGT 2 cut(s) 661, 1017
HpyCH4IV ACGT 1 cut(s) 1078
HpyCH4V TGCA 8 cut(s) 193, 313, 361, 396, 547, 881, 945, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 963
HpyF3I CTNAG 3 cut(s) 720, 908, 938
HpySE526I ACGT 1 cut(s) 1078
Hsp92II CATG 6 cut(s) 484, 715, 861, 921, 953, 1000
Kzo9I GATC 5 cut(s) 212, 580, 690, 898, 928
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 5 cut(s) 97, 771, 932, 967, 994
MaeI CTAG 2 cut(s) 488, 591
MaeII ACGT 1 cut(s) 1078
MaeIII GTNAC 2 cut(s) 593, 707
MalI GATC 5 cut(s) 214, 582, 692, 900, 930
MboI GATC 5 cut(s) 212, 580, 690, 898, 928
MboII GAAGA 5 cut(s) 97, 232, 508, 983, 986
MflI RGATCY 2 cut(s) 580, 898
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 7 cut(s) 92, 97, 216, 296, 405, 470, 727
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 947
MroXI GAANNNNTTC 2 cut(s) 503, 742
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 330, 419, 663, 893
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 252, 270
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 2 cut(s) 252, 270
MwoI GCNNNNNNNGC 1 cut(s) 963
NdeI CATATG 1 cut(s) 703
NdeII GATC 5 cut(s) 212, 580, 690, 898, 928
NlaIII CATG 6 cut(s) 484, 715, 861, 921, 953, 1000
NlaIV GGNNCC 1 cut(s) 900
NsiI ATGCAT 1 cut(s) 947
NspI RCATGY 3 cut(s) 484, 715, 953
PaeI GCATGC 1 cut(s) 484
PciI ACATGT 2 cut(s) 711, 949
PctI GAATGC 1 cut(s) 396
PdmI GAANNNNTTC 2 cut(s) 503, 742
PfeI GAWTC 4 cut(s) 131, 467, 619, 914
PkrI GCNGC 1 cut(s) 192
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PscI ACATGT 2 cut(s) 711, 949
Psp6I CCWGG 2 cut(s) 250, 268
PspGI CCWGG 2 cut(s) 250, 268
PspN4I GGNNCC 1 cut(s) 900
PsuI RGATCY 2 cut(s) 580, 898
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 4 cut(s) 330, 419, 663, 893
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 5 cut(s) 212, 580, 690, 898, 928
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 252, 270
SfaNI GCATC 5 cut(s) 97, 771, 932, 967, 994
SmlI CTYRAG 2 cut(s) 528, 556
SmoI CTYRAG 2 cut(s) 528, 556
SphI GCATGC 1 cut(s) 484
SspMI CTAG 2 cut(s) 488, 591
StyD4I CCNGG 2 cut(s) 250, 268
StyI CCWWGG 2 cut(s) 15, 902
TaaI ACNGT 2 cut(s) 661, 1017
TaiI ACGT 1 cut(s) 1081
TfiI GAWTC 4 cut(s) 131, 467, 619, 914
Tru1I TTAA 4 cut(s) 330, 419, 663, 893
Tru9I TTAA 4 cut(s) 330, 419, 663, 893
TscAI CASTG 2 cut(s) 151, 1020
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 8 cut(s) 351, 563, 624, 632, 681, 906, 1041, 1110
TspRI CASTG 2 cut(s) 151, 1020
XapI RAATTY 4 cut(s) 181, 627, 738, 1116
XceI RCATGY 3 cut(s) 484, 715, 953
XmnI GAANNNNTTC 2 cut(s) 503, 742
XspI CTAG 2 cut(s) 488, 591
Zsp2I ATGCAT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.