Rroxscaffold_1G00054480

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
75876011 .. 75880043
4033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054480.1

Sequence Viewer

Length: 465 bp
ATGGACAGTGGTTACATGTCTCCTGAGTATGCTATGGAGGGAATTTTTTCTGGCAAATCTGATGTCTTTAGTTTTGGAGTGTTGATGCTTGAAATCATAAGTGGTAGGAGAAACAACAGCTTCCACAATGCTCATCGCTCGCTCAATTTAGTAGGATATACATGGGAGTTATGGAAAGAAGGTGCAGGACTAGATTTAATGGATCCAAGGCTAAGCGATTCATGTAATAGAGATCAACTGCTAAGATGCATACATGTTGGTCTATTATGCGTGGAAGAAGATGCAGAACATCGGCCAACCATGTCAGATGCCATATCACTGTTGACAAATGAAAGCTTGCCATTACCTACACCAACAAAACCAGCATTTTTCCCAGTAAGACGTGTGGCTGAAGTTGATGTAAGTGGAAGCAGATCAGAAATTTCGTCAAATGACTTGTCAAACTCCTTTGTTATTGGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.13

Weight (kDa)

5.01

Isoelectric Point (pI)

56.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 5 - 104 6.6e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 197, 210
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 2 cut(s) 42, 420
AcuI CTGAAG 1 cut(s) 411
AflIII ACRYGT 3 cut(s) 15, 253, 382
AgsI TTSAA 1 cut(s) 92
AjiI CACGTC 1 cut(s) 383
AluBI AGCT 2 cut(s) 120, 336
AluI AGCT 2 cut(s) 120, 336
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 197, 210
AoxI GGCC 1 cut(s) 293
ApoI RAATTY 2 cut(s) 42, 420
ArsI GACNNNNNNTTYG 4 cut(s) 48, 80, 422, 454
Asp700I GAANNNNTTC 1 cut(s) 46
BamHI GGATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 191
BlpI GCTNAGC 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 4 cut(s) 75, 236, 271, 298
BmuI ACTGGG 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 3 cut(s) 202, 232, 413
Bsp1720I GCTNAGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 197, 210
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 3 cut(s) 202, 232, 413
BssT1I CCWWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 8, 321
BstC8I GCNNGC 2 cut(s) 140, 338
BstDEI CTNAG 3 cut(s) 24, 212, 242
BstKTI GATC 3 cut(s) 205, 235, 416
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 202, 232, 413
BstNSI RCATGY 2 cut(s) 19, 257
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 295
BtgZI GCGATG 1 cut(s) 119
BtrI CACGTC 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 13, 317
Cac8I GCNNGC 2 cut(s) 140, 338
CviAII CATG 5 cut(s) 16, 162, 222, 254, 301
CviJI RGCY 5 cut(s) 120, 211, 295, 336, 389
CviKI_1 RGCY 5 cut(s) 120, 211, 295, 336, 389
DdeI CTNAG 3 cut(s) 24, 212, 242
DpnI GATC 3 cut(s) 204, 234, 415
DpnII GATC 3 cut(s) 202, 232, 413
EaeI YGGCCR 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 206
EcoT22I ATGCAT 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 5 cut(s) 19, 165, 225, 257, 304
FatI CATG 5 cut(s) 15, 161, 221, 253, 300
FspBI CTAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 295
Hin1II CATG 5 cut(s) 19, 165, 225, 257, 304
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 324
Hpy188I TCNGA 3 cut(s) 61, 307, 418
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 324
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 2 cut(s) 8, 321
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 185, 249, 284
HpyF3I CTNAG 3 cut(s) 24, 212, 242
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 5 cut(s) 19, 165, 225, 257, 304
Kzo9I GATC 3 cut(s) 202, 232, 413
LpnPI CCDG 5 cut(s) 36, 36, 171, 375, 387
LweI GCATC 4 cut(s) 75, 236, 271, 298
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 11
MalI GATC 3 cut(s) 204, 234, 415
MboI GATC 3 cut(s) 202, 232, 413
MboII GAAGA 2 cut(s) 287, 290
MflI RGATCY 1 cut(s) 202
MluCI AATT 3 cut(s) 42, 145, 420
MnlI CCTC 1 cut(s) 31
Mph1103I ATGCAT 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 46
MseI TTAA 1 cut(s) 197
NdeII GATC 3 cut(s) 202, 232, 413
NlaIII CATG 5 cut(s) 19, 165, 225, 257, 304
NlaIV GGNNCC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 251
NspI RCATGY 2 cut(s) 19, 257
PciI ACATGT 2 cut(s) 15, 253
PdmI GAANNNNTTC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 218
PscI ACATGT 2 cut(s) 15, 253
PspN4I GGNNCC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 202
SaqAI TTAA 1 cut(s) 197
Sau3AI GATC 3 cut(s) 202, 232, 413
SetI ASST 5 cut(s) 122, 184, 338, 349, 385
SfaNI GCATC 4 cut(s) 75, 236, 271, 298
Sse9I AATT 3 cut(s) 42, 145, 420
SspMI CTAG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 8, 321
TaiI ACGT 1 cut(s) 385
TasI AATT 3 cut(s) 42, 145, 420
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 2 cut(s) 13, 324
TspDTI ATGAA 2 cut(s) 210, 345
TspRI CASTG 2 cut(s) 13, 324
XapI RAATTY 2 cut(s) 42, 420
XceI RCATGY 2 cut(s) 19, 257
XmnI GAANNNNTTC 1 cut(s) 46
XspI CTAG 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.