Rroxscaffold_1G00053760

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
74967522 .. 74968891
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053760.1

Sequence Viewer

Length: 609 bp
ATGCAAGTGATTCATAGAGATTTGAAAGCTAGTAACATTCTACTTGATGAAAATATGAATCCCAAAATTTCTGATTTTGGTATGGCAAGAATCTTTACTCATAATGAACGGGAAGCAAAGACTAAGACAAAGAGGATTGTCGGGACATATGGTTACATGTCACCGGAGTATGCTATGGGAGGAATTTTTTCCACAAAATCCGATGTGTATAGTTTTGGAGTCCTAATGCTTGAGATCATTAGTGGTCAGAGAAACACAAGCTTCTACGATGATGATCGTGTGGTCAATACAGTGGGATATGCATGGGAGTTATGGAAAGACGGTGCAGGGTTAGCATTCAAGGATCCAACACTAGGTGATTCATGCAACGGGGATCAATTGCTCAGATGCATCCATGTTGGTCTACTATGTGTGGAGGAGAATGGAGCCGATCGGCCTACTATGTTGGAAGTCATTTCCATGTTGACAAATGAAAGCATGTCACTACGTGCACCTACAAAGCCAGCATTCTGTGTAGAGAGAAAAGGATTGAGAACTGGCACAGTTGGAAAGGGTTCAGAAACTATGTCGATAAATACCATGTCCAATTCTGATTATGATGCACGTTAA

Protein Analysis

202

Amino Acids

22.46

Weight (kDa)

5.67

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 97 3.2e-23 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 87 2.4e-22 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 403
AclWI GGATC 3 cut(s) 338, 351, 381
AcsI RAATTY 2 cut(s) 66, 183
AdeI CACNNNGTG 2 cut(s) 356, 488
AfiI CCNNNNNNNGG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 2 cut(s) 25, 340
AluBI AGCT 2 cut(s) 29, 261
AluI AGCT 2 cut(s) 29, 261
Alw21I GWGCWC 1 cut(s) 493
Alw44I GTGCAC 1 cut(s) 489
AlwI GGATC 3 cut(s) 338, 351, 381
AoxI GGCC 1 cut(s) 434
ApaLI GTGCAC 1 cut(s) 489
ApoI RAATTY 2 cut(s) 66, 183
Asp700I GAANNNNTTC 2 cut(s) 187, 553
AsuHPI GGTGA 2 cut(s) 153, 368
BaeGI GKGCMC 1 cut(s) 493
BamHI GGATCC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 493
BfaI CTAG 2 cut(s) 30, 353
BmiI GGNNCC 2 cut(s) 345, 427
BmsI GCATC 3 cut(s) 377, 399, 589
BpuEI CTTGAG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 541
Bse8I GATNNNNATC 1 cut(s) 273
BseGI GGATG 1 cut(s) 390
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 436
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 493
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 157
BsmI GAATGC 2 cut(s) 335, 506
BsnI GGCC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 5 cut(s) 234, 274, 343, 373, 430
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 345, 427
BspPI GGATC 3 cut(s) 338, 351, 381
BsrI ACTGG 1 cut(s) 541
BssMI GATC 5 cut(s) 234, 274, 343, 373, 430
Bst4CI ACNGT 3 cut(s) 292, 323, 544
BstBAI YACGTR 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 2 cut(s) 123, 383
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 5 cut(s) 237, 277, 346, 376, 433
BstMBI GATC 5 cut(s) 234, 274, 343, 373, 430
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNSI RCATGY 2 cut(s) 160, 481
BstSLI GKGCMC 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 436
BtsCI GGATG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 504
CviAII CATG 7 cut(s) 157, 303, 363, 395, 460, 478, 580
CviJI RGCY 5 cut(s) 29, 261, 428, 436, 502
CviKI_1 RGCY 5 cut(s) 29, 261, 428, 436, 502
DdeI CTNAG 2 cut(s) 123, 383
DpnI GATC 5 cut(s) 236, 276, 345, 375, 432
DpnII GATC 5 cut(s) 234, 274, 343, 373, 430
DraIII CACNNNGTG 2 cut(s) 356, 488
EcoT22I ATGCAT 2 cut(s) 304, 392
FaeI CATG 7 cut(s) 160, 306, 366, 398, 463, 481, 583
FaqI GGGAC 1 cut(s) 157
FatI CATG 7 cut(s) 156, 302, 362, 394, 459, 477, 579
FauNDI CATATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 403
FokI GGATG 1 cut(s) 377
FspBI CTAG 2 cut(s) 30, 353
HaeIII GGCC 1 cut(s) 436
HapII CCGG 1 cut(s) 164
Hin1II CATG 7 cut(s) 160, 306, 366, 398, 463, 481, 583
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 5 cut(s) 10, 58, 90, 219, 359
HpaII CCGG 1 cut(s) 164
HphI GGTGA 2 cut(s) 153, 368
Hpy166II GTNNAC 3 cut(s) 404, 465, 491
Hpy188I TCNGA 6 cut(s) 73, 202, 249, 386, 559, 592
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 3 cut(s) 404, 465, 491
HpyCH4III ACNGT 3 cut(s) 292, 323, 544
HpyCH4IV ACGT 2 cut(s) 487, 604
HpyCH4V TGCA 7 cut(s) 4, 302, 326, 366, 390, 491, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 2 cut(s) 123, 383
HpySE526I ACGT 2 cut(s) 487, 604
Hsp92II CATG 7 cut(s) 160, 306, 366, 398, 463, 481, 583
Kzo9I GATC 5 cut(s) 234, 274, 343, 373, 430
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 4 cut(s) 177, 312, 516, 522
LweI GCATC 3 cut(s) 377, 399, 589
MaeI CTAG 2 cut(s) 30, 353
MaeII ACGT 2 cut(s) 487, 604
MaeIII GTNAC 4 cut(s) 32, 152, 159, 480
MalI GATC 5 cut(s) 236, 276, 345, 375, 432
MboI GATC 5 cut(s) 234, 274, 343, 373, 430
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 4 cut(s) 66, 183, 377, 586
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 3 cut(s) 371, 426, 526
MnlI CCTC 3 cut(s) 126, 173, 409
Mph1103I ATGCAT 2 cut(s) 304, 392
MroXI GAANNNNTTC 2 cut(s) 187, 553
MseI TTAA 1 cut(s) 607
MslI CAYNNNNRTG 1 cut(s) 458
MspI CCGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 377
Mva1269I GAATGC 2 cut(s) 335, 506
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeI CATATG 1 cut(s) 148
NdeII GATC 5 cut(s) 234, 274, 343, 373, 430
NlaIII CATG 7 cut(s) 160, 306, 366, 398, 463, 481, 583
NlaIV GGNNCC 2 cut(s) 345, 427
NmuCI GTSAC 2 cut(s) 159, 480
NsiI ATGCAT 2 cut(s) 304, 392
NspI RCATGY 2 cut(s) 160, 481
PciI ACATGT 1 cut(s) 156
PctI GAATGC 2 cut(s) 335, 506
PdmI GAANNNNTTC 2 cut(s) 187, 553
PfeI GAWTC 4 cut(s) 10, 58, 90, 359
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Ppu21I YACGTR 1 cut(s) 488
PscI ACATGT 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 345, 427
PsuI RGATCY 1 cut(s) 343
PvuI CGATCG 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 458
SaqAI TTAA 1 cut(s) 607
Sau3AI GATC 5 cut(s) 234, 274, 343, 373, 430
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 493
SetI ASST 6 cut(s) 31, 263, 358, 490, 496, 607
SfaNI GCATC 3 cut(s) 377, 399, 589
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 66, 183, 377, 586
SspMI CTAG 2 cut(s) 30, 353
TaaI ACNGT 3 cut(s) 292, 323, 544
TaiI ACGT 2 cut(s) 490, 607
TaqI TCGA 1 cut(s) 569
TasI AATT 4 cut(s) 66, 183, 377, 586
TfiI GAWTC 4 cut(s) 10, 58, 90, 359
Tru1I TTAA 1 cut(s) 607
Tru9I TTAA 1 cut(s) 607
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 2 cut(s) 159, 480
Tsp45I GTSAC 2 cut(s) 159, 480
TspDTI ATGAA 5 cut(s) 63, 71, 120, 351, 486
TspRI CASTG 1 cut(s) 297
VneI GTGCAC 1 cut(s) 489
XapI RAATTY 2 cut(s) 66, 183
XceI RCATGY 2 cut(s) 160, 481
XmiI GTMKAC 1 cut(s) 403
XmnI GAANNNNTTC 2 cut(s) 187, 553
XspI CTAG 2 cut(s) 30, 353
Zsp2I ATGCAT 2 cut(s) 304, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.