Rroxscaffold_1G00043620

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
62261990 .. 62262490
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043620.1

Sequence Viewer

Length: 501 bp
ATGTGGAGCTTGTGGAGTCCTTGTGATGGTGCAACAAACATACCGAAACCAGGTGAAAGTCTAGATTCTTCAAGATCATTAGTTTCTGCAAATCGGAAGTTCACTTTGAATTTTCGTGTTTATGAGCATGATGCAAACTTGAGTTACTTAGTGATAAAGTGGAATGCGAGTCATAACTATGCATGGGTTGCGAATAGAGAAGCACCCATTTCGTACCCTTTTGGAGTTCTTACATTGGACAGGAACTACACATTGAAGATTACTCACGAGAGATGGGGCTGCAGTGGTGCTTTACTCGCTGATTCGGAGACCATCGGTGGTGATGTTGTGGCTACTCTTATGGATGATGGGAATTTTGTGCTGCAAGAAGTGAGTGATGATGGATCCGTGAAGAGGGATTTGTGGCGAGTTTTGATTTTCCCGGAGATGTGCTTCTCGCTGTATGAAATCGAGGGGTTAACTGTAGTAATAGGCATAATTGGTCACTTTCGTGCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

18.59

Weight (kDa)

5.12

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 61 - 135 1.8e-08 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 378, 391
AcsI RAATTY 2 cut(s) 109, 352
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 3 cut(s) 26, 50, 393
AgsI TTSAA 3 cut(s) 72, 109, 256
AjnI CCWGG 1 cut(s) 49
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 2 cut(s) 378, 391
ApeKI GCWGC 2 cut(s) 279, 361
ApoI RAATTY 2 cut(s) 109, 352
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 2 cut(s) 65, 332
BamHI GGATCC 1 cut(s) 383
BauI CACGAG 1 cut(s) 266
BbvI GCAGC 2 cut(s) 266, 348
BccI CCATC 5 cut(s) 20, 267, 320, 341, 374
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 2 cut(s) 280, 462
BisI GCNGC 2 cut(s) 280, 362
BlsI GCNGC 2 cut(s) 281, 363
Bme1390I CCNGG 2 cut(s) 51, 422
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 2 cut(s) 51, 422
BmsI GCATC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 50, 393
BseBI CCWGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 3 cut(s) 26, 50, 393
BseXI GCAGC 2 cut(s) 266, 348
BsiSI CCGG 1 cut(s) 422
BslI CCNNNNNNNGG 3 cut(s) 26, 50, 393
BsmAI GTCTC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 74, 383
BspLI GGNNCC 1 cut(s) 385
BspMAI CTGCAG 1 cut(s) 284
BspPI GGATC 2 cut(s) 378, 391
BspTNI GGTCTC 1 cut(s) 302
BssMI GATC 2 cut(s) 74, 383
BssSI CACGAG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 1 cut(s) 386
BstAPI GCANNNNNTGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 2 cut(s) 77, 386
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 74, 383
BstMWI GCNNNNNNNGC 2 cut(s) 188, 296
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 49, 420
BstSFI CTRYAG 2 cut(s) 280, 462
BstV1I GCAGC 2 cut(s) 266, 348
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 49
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 128, 183
CviJI RGCY 3 cut(s) 9, 279, 332
CviKI_1 RGCY 3 cut(s) 9, 279, 332
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 148
DpnI GATC 2 cut(s) 76, 385
DpnII GATC 2 cut(s) 74, 383
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco31I GGTCTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 184
FaeI CATG 2 cut(s) 131, 186
FaiI YATR 9 cut(s) 41, 123, 129, 174, 180, 184, 341, 444, 476
FatI CATG 2 cut(s) 127, 182
Fnu4HI GCNGC 2 cut(s) 280, 362
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 280, 362
FspBI CTAG 1 cut(s) 62
GluI GCNGC 2 cut(s) 280, 362
HapII CCGG 1 cut(s) 422
Hin1II CATG 2 cut(s) 131, 186
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 4 cut(s) 16, 65, 169, 302
HpaI GTTAAC 1 cut(s) 459
HpaII CCGG 1 cut(s) 422
HphI GGTGA 2 cut(s) 65, 332
Hpy166II GTNNAC 2 cut(s) 102, 459
Hpy188I TCNGA 2 cut(s) 96, 307
Hpy188III TCNNGA 3 cut(s) 62, 72, 266
Hpy8I GTNNAC 2 cut(s) 102, 459
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 6 cut(s) 32, 89, 134, 182, 282, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 296
HpyF3I CTNAG 1 cut(s) 148
Hsp92II CATG 2 cut(s) 131, 186
KspAI GTTAAC 1 cut(s) 459
Kzo9I GATC 2 cut(s) 74, 383
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 5 cut(s) 36, 63, 226, 435, 480
Lsp1109I GCAGC 2 cut(s) 266, 348
LweI GCATC 1 cut(s) 121
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 143, 482
MalI GATC 2 cut(s) 76, 385
MboI GATC 2 cut(s) 74, 383
MboII GAAGA 3 cut(s) 60, 268, 403
MflI RGATCY 1 cut(s) 383
MluCI AATT 3 cut(s) 109, 352, 477
MlyI GAGTC 2 cut(s) 25, 178
MnlI CCTC 2 cut(s) 387, 445
Mph1103I ATGCAT 1 cut(s) 184
MseI TTAA 2 cut(s) 458, 499
MslI CAYNNNNRTG 2 cut(s) 177, 489
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 2 cut(s) 51, 422
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 188, 296
NciI CCSGG 1 cut(s) 422
NdeII GATC 2 cut(s) 74, 383
NlaIII CATG 2 cut(s) 131, 186
NlaIV GGNNCC 1 cut(s) 385
NmuCI GTSAC 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 489
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 2 cut(s) 65, 302
PfoI TCCNGGA 1 cut(s) 420
PkrI GCNGC 2 cut(s) 281, 363
PleI GAGTC 2 cut(s) 24, 177
PpsI GAGTC 2 cut(s) 24, 177
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 385
PstI CTGCAG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 383
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 177, 489
SaqAI TTAA 2 cut(s) 458, 499
SatI GCNGC 2 cut(s) 280, 362
Sau3AI GATC 2 cut(s) 74, 383
SchI GAGTC 2 cut(s) 25, 178
ScrFI CCNGG 2 cut(s) 51, 422
SetI ASST 2 cut(s) 11, 55
SexAI ACCWGGT 1 cut(s) 49
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 2 cut(s) 280, 462
SmiMI CAYNNNNRTG 2 cut(s) 177, 489
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 3 cut(s) 109, 352, 477
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 49, 420
TaaI ACNGT 1 cut(s) 463
TaqI TCGA 1 cut(s) 450
TasI AATT 3 cut(s) 109, 352, 477
TfiI GAWTC 2 cut(s) 65, 302
Tru1I TTAA 2 cut(s) 458, 499
Tru9I TTAA 2 cut(s) 458, 499
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 2 cut(s) 279, 361
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 1 cut(s) 459
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 1 cut(s) 289
XapI RAATTY 2 cut(s) 109, 352
XbaI TCTAGA 1 cut(s) 61
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.