Rroxscaffold_1G00053890

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000096
Physical Location & Seq
Forward (+)
75120216 .. 75123902
3687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053890.1

Sequence Viewer

Length: 1908 bp
ATGGCTAGTAGTAGCCGCCTGGCGTTAATTTGCTTACTCTTCTTTTCATGCTTGTGGAGATCTCTTGCTGCAAGAAGAGATACACTGAAACCAGGTGACACGCTCAATTCCTCGAGCTCCTTAGTTTCTGAAACAGGTAAGTTCAGTTTGGGGTTCTTCCAAAATGGAATGTCGAAATCCAGCTATCTAGCAATCTCCCACACCAATACTGGAAATTCTATAAATTATGCATGGATTGCCAACCGAAAAACACCTATTCTATACCCAACAGGAGTTCTTACCTTGGATAAGAACAACACCTTGAAAATTACCCAAAGTGGTGGTGATCCTCTGCTTATTTACTCTGCTTCAGGAAGTACTACCAATAATTCCAATATTGTTGCTACCCTTTTGGATTCTGGCAATTTCATTCTACAACAAGTGAACTCCGACGGATCAATGAAGAGGGTTTTGTGGCAAAGTTTTGATCATCCCGGAGACACCCTATTGCCAGGTATGAAGTTAGGTGTTGATTATAAAAATGGTCACATTTGGTCACTTTCATCGTGGACTGGTCTGTACAGTGTAGAACCGGGGGCTTTCACTCTCGATTGGGACCCCGGTGAGCACCAGTTGAAGATCAAGGAACGAGGGAAGGTTTGTTGGAGTAGTGGTGTCTTTAGCAATGGAAGATTCAAGTTTGTATTACCTGATGATGATTCCAAGAAGTTGAGGTACAATTTTAGCATTGTTTCGAATGAGAATGAAGACTACTTTACTTATACTTATGTTGGTGATCAAAGTGATGCATCACAATGGGTGCTGAACGCCATGGGGCGACTACATGACTTCGATGAAAATGTTGATATTGCGCGAGCAGATTACTGTTACGGCTATAACAGTGATGGAGGGTGCGCGAGATGGGAGCAACCAAGTTGCAGACATGTGGGTGATAAATTTGTGCTAAAAATTGGTTACTTTCGAGAAATGACCAGCTCTAATTCAATATATACGAGTGATTCAAATACGACTCTGGGATATAGTGATTGTATGACTACTTGTTGGAACACTTGTGGCTGCCTTGGATTCAACTTTCTGCTTAATAATCTGACTGGATGCCAGTACTGGAGTGGAAACTGGGAGTTCATCGAAGAGATCACTGATGATGATTCACGGGTTTTTGTATATACAACAAAGTCGACTCCCAATATCAAAGCTGAGAACAGGAGAAAGATTCAGAATGAGTTGCTGAACCTAATGAAATCTAATAGACCTACTGATGTGAACGGAGTTCAAAATGATGGAAAGATGGAACAACAAGATTTAAGTGTATTTAGCTATGCGTCTTTAATGACTGCCACATGCAACTTCTCTGAGGAAAACAAGCTCGGACAAGGGGGCTTTGGTCCTGTTTATAAGGGAAAATTGGTGACAGGACAAGAAATAGCTGTGAAGAGGCTTTCAGAACGTTCACAACAGGGAACAGTGGAGTTTAAAAATGAACTGAGACTCATATATGAACTCCAACATACAAATCTTGCTCAACTTTTTGGATTTTGCATTCATGGAGATGAGAGGATGTTAATATATGAGTACATGCCAAACAGAAGTTTGGATTACTATTTATTTGATTCAACCAGAGCTCTGTTTCTAGATTGGACGACTCGTTTCAGTATAATCGAAGGAATCGCTCAAGGATTGCTTTACTTGCACAAGTACTCAAGAATGCAAGTAATTCATAGAGATTTGAAACCTAGTAACATTCTACTTGATGAAAATATGAATCCCAAGATTTCTGATTTTGGTATGGCAAGGATCTTCACCCATAATGAACGGGAAGCAAATACTAAGACTAAGAGGATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCTATGGGGGGAATTTTTTTCCGTAAAATCTGA

Protein Analysis

635

Amino Acids

71.92

Weight (kDa)

6.44

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 183 3.1e-27 D-mannose binding lectin
Pkinase PF00069 451 - 625 1.8e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 453 - 630 1.4e-34 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 516, 1395
AccI GTMKAC 1 cut(s) 1178
AccII CGCG 2 cut(s) 853, 896
AciI CCGC 1 cut(s) 16
AclI AACGTT 1 cut(s) 1447
AclWI GGATC 3 cut(s) 320, 442, 1802
AcsI RAATTY 3 cut(s) 214, 935, 1887
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 6 cut(s) 358, 560, 716, 1103, 1574, 1697
AflIII ACRYGT 2 cut(s) 922, 1860
AgsI TTSAA 9 cut(s) 304, 616, 676, 984, 1002, 1069, 1274, 1614, 1729
AjnI CCWGG 3 cut(s) 18, 91, 490
AluBI AGCT 8 cut(s) 117, 183, 975, 1196, 1317, 1366, 1427, 1622
AluI AGCT 8 cut(s) 117, 183, 975, 1196, 1317, 1366, 1427, 1622
Alw21I GWGCWC 3 cut(s) 119, 609, 1624
Alw26I GTCTC 3 cut(s) 471, 1480, 1869
AlwI GGATC 3 cut(s) 320, 442, 1802
Ama87I CYCGRG 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 68, 1056
ApoI RAATTY 3 cut(s) 214, 935, 1887
AspLEI GCGC 2 cut(s) 853, 896
AspS9I GGNCC 2 cut(s) 595, 1385
AsuC2I CCSGG 3 cut(s) 474, 573, 600
AsuHPI GGTGA 7 cut(s) 107, 335, 614, 785, 941, 1420, 1792
AsuII TTCGAA 1 cut(s) 734
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 2 cut(s) 595, 1385
BanII GRGCYC 2 cut(s) 119, 1624
BarI GAAGNNNNNNTAC 2 cut(s) 698, 730
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 3 cut(s) 119, 609, 1624
BbvI GCAGC 2 cut(s) 55, 1043
BccI CCATC 4 cut(s) 878, 894, 1274, 1282
BceAI ACGGC 1 cut(s) 886
BciT130I CCWGG 3 cut(s) 20, 93, 492
BclI TGATCA 2 cut(s) 466, 775
BcnI CCSGG 3 cut(s) 474, 573, 600
BcoDI GTCTC 3 cut(s) 471, 1480, 1869
BfaI CTAG 4 cut(s) 6, 188, 1631, 1734
BglII AGATCT 1 cut(s) 59
BisI GCNGC 3 cut(s) 16, 69, 1057
BlsI GCNGC 3 cut(s) 17, 70, 1058
BmcAI AGTACT 3 cut(s) 358, 1103, 1697
Bme1390I CCNGG 6 cut(s) 20, 93, 474, 492, 573, 600
Bme18I GGWCC 2 cut(s) 595, 1385
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 595, 1385
BmiI GGNNCC 2 cut(s) 596, 597
BmrFI CCNGG 6 cut(s) 20, 93, 474, 492, 573, 600
BmrI ACTGGG 1 cut(s) 1126
BmsI GCATC 3 cut(s) 775, 797, 1085
BmuI ACTGGG 1 cut(s) 1126
BpiI GAAGAC 1 cut(s) 753
BpmI CTGGAG 2 cut(s) 1126, 1851
Bpu14I TTCGAA 1 cut(s) 734
BpuEI CTTGAG 2 cut(s) 1656, 1684
BpuMI CCSGG 3 cut(s) 474, 573, 600
BsaJI CCNNGG 5 cut(s) 282, 572, 598, 810, 1060
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bse1I ACTGG 7 cut(s) 214, 556, 610, 1096, 1099, 1109, 1121
Bse3DI GCAATG 1 cut(s) 670
BseBI CCWGG 3 cut(s) 20, 93, 492
BseDI CCNNGG 5 cut(s) 282, 572, 598, 810, 1060
BseGI GGATG 3 cut(s) 469, 1100, 1563
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 3 cut(s) 1188, 1344, 1475
BseNI ACTGG 7 cut(s) 214, 556, 610, 1096, 1099, 1109, 1121
BseXI GCAGC 2 cut(s) 55, 1043
Bsh1236I CGCG 2 cut(s) 853, 896
BsiHKAI GWGCWC 3 cut(s) 119, 609, 1624
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 3 cut(s) 474, 572, 600
BslFI GGGAC 2 cut(s) 608, 1861
BsmAI GTCTC 3 cut(s) 471, 1480, 1869
BsmFI GGGAC 2 cut(s) 608, 1861
BsmI GAATGC 2 cut(s) 1539, 1710
BsoBI CYCGRG 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 734
Bsp1286I GDGCHC 3 cut(s) 119, 609, 1624
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 8 cut(s) 59, 325, 434, 466, 618, 775, 1134, 1794
Bsp19I CCATGG 1 cut(s) 810
BspACI CCGC 1 cut(s) 16
BspCNI CTCAG 3 cut(s) 1189, 1345, 1476
BspFNI CGCG 2 cut(s) 853, 896
BspLI GGNNCC 2 cut(s) 596, 597
BspPI GGATC 3 cut(s) 320, 442, 1802
BspT104I TTCGAA 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 670
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 7 cut(s) 214, 556, 610, 1096, 1099, 1109, 1121
BssECI CCNNGG 5 cut(s) 282, 572, 598, 810, 1060
BssMI GATC 8 cut(s) 59, 325, 434, 466, 618, 775, 1134, 1794
BssT1I CCWWGG 3 cut(s) 282, 810, 1060
Bst2UI CCWGG 3 cut(s) 20, 93, 492
Bst4CI ACNGT 4 cut(s) 563, 866, 881, 1465
Bst6I CTCTTC 5 cut(s) 44, 70, 437, 1125, 1427
BstAPI GCANNNNNTGC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 558
BstBI TTCGAA 1 cut(s) 734
BstC8I GCNNGC 1 cut(s) 855
BstDEI CTNAG 6 cut(s) 121, 1197, 1353, 1484, 1827, 1833
BstDSI CCRYGG 1 cut(s) 810
BstF5I GGATG 3 cut(s) 469, 1100, 1563
BstFNI CGCG 2 cut(s) 853, 896
BstHHI GCGC 2 cut(s) 853, 896
BstKTI GATC 8 cut(s) 62, 328, 437, 469, 621, 778, 1137, 1797
BstMAI GTCTC 3 cut(s) 471, 1480, 1869
BstMBI GATC 8 cut(s) 59, 325, 434, 466, 618, 775, 1134, 1794
BstMWI GCNNNNNNNGC 2 cut(s) 236, 1687
BstNI CCWGG 3 cut(s) 20, 93, 492
BstNSI RCATGY 4 cut(s) 926, 1344, 1579, 1864
BstSCI CCNGG 6 cut(s) 18, 91, 472, 490, 571, 598
BstUI CGCG 2 cut(s) 853, 896
BstV1I GCAGC 2 cut(s) 55, 1043
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 2 cut(s) 59, 1794
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 2 cut(s) 59, 1794
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 3 cut(s) 469, 1100, 1563
BtsIMutI CAGTG 5 cut(s) 83, 568, 886, 1137, 1470
Cac8I GCNNGC 1 cut(s) 855
CfoI GCGC 2 cut(s) 853, 896
Cfr13I GGNCC 2 cut(s) 595, 1385
CseI GACGC 1 cut(s) 1311
CsiI ACCWGGT 1 cut(s) 91
Csp6I GTAC 6 cut(s) 357, 559, 715, 1102, 1573, 1696
CviAII CATG 9 cut(s) 48, 231, 811, 824, 923, 1341, 1544, 1576, 1861
CviQI GTAC 6 cut(s) 357, 559, 715, 1102, 1573, 1696
DdeI CTNAG 6 cut(s) 121, 1197, 1353, 1484, 1827, 1833
DpnI GATC 8 cut(s) 61, 327, 436, 468, 620, 777, 1136, 1796
DpnII GATC 8 cut(s) 59, 325, 434, 466, 618, 775, 1134, 1794
DraI TTTAAA 1 cut(s) 1474
Eam1104I CTCTTC 5 cut(s) 44, 70, 437, 1125, 1427
EarI CTCTTC 5 cut(s) 44, 70, 437, 1125, 1427
Ecl136II GAGCTC 2 cut(s) 117, 1622
Eco130I CCWWGG 3 cut(s) 282, 810, 1060
Eco24I GRGCYC 2 cut(s) 119, 1624
Eco47I GGWCC 2 cut(s) 595, 1385
Eco53kI GAGCTC 2 cut(s) 117, 1622
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 2 cut(s) 117, 1622
EcoO109I RGGNCCY 1 cut(s) 595
EcoRII CCWGG 3 cut(s) 18, 91, 490
EcoT14I CCWWGG 3 cut(s) 282, 810, 1060
EcoT22I ATGCAT 2 cut(s) 232, 790
EcoT38I GRGCYC 2 cut(s) 119, 1624
ErhI CCWWGG 3 cut(s) 282, 810, 1060
FaeI CATG 9 cut(s) 51, 234, 814, 827, 926, 1344, 1547, 1579, 1864
FalI AAGNNNNNCTT 2 cut(s) 1665, 1697
FaqI GGGAC 2 cut(s) 608, 1861
FatI CATG 9 cut(s) 47, 230, 810, 823, 922, 1340, 1543, 1575, 1860
FauNDI CATATG 1 cut(s) 1852
FbaI TGATCA 2 cut(s) 466, 775
FblI GTMKAC 1 cut(s) 1178
Fnu4HI GCNGC 3 cut(s) 16, 69, 1057
FokI GGATG 3 cut(s) 456, 1107, 1570
FriOI GRGCYC 2 cut(s) 119, 1624
Fsp4HI GCNGC 3 cut(s) 16, 69, 1057
FspBI CTAG 4 cut(s) 6, 188, 1631, 1734
GlaI GCGC 2 cut(s) 852, 895
GluI GCNGC 3 cut(s) 16, 69, 1057
GsuI CTGGAG 2 cut(s) 1126, 1851
HapII CCGG 3 cut(s) 474, 572, 600
HgaI GACGC 1 cut(s) 1311
HhaI GCGC 2 cut(s) 853, 896
Hin1II CATG 9 cut(s) 51, 234, 814, 827, 926, 1344, 1547, 1579, 1864
Hin6I GCGC 2 cut(s) 851, 894
HinP1I GCGC 2 cut(s) 851, 894
HincII GTYRAC 1 cut(s) 1179
HindII GTYRAC 1 cut(s) 1179
HpaII CCGG 3 cut(s) 474, 572, 600
HphI GGTGA 7 cut(s) 107, 335, 614, 785, 941, 1420, 1792
Hpy166II GTNNAC 5 cut(s) 424, 549, 1179, 1264, 1451
Hpy188I TCNGA 9 cut(s) 130, 430, 1089, 1218, 1354, 1370, 1444, 1777, 1907
Hpy188III TCNNGA 6 cut(s) 351, 587, 962, 1631, 1701, 1868
Hpy8I GTNNAC 5 cut(s) 424, 549, 1179, 1264, 1451
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 2 cut(s) 628, 1655
HpyCH4III ACNGT 4 cut(s) 563, 866, 881, 1465
HpyCH4IV ACGT 1 cut(s) 1447
HpyCH4V TGCA 8 cut(s) 71, 230, 788, 918, 1344, 1539, 1690, 1708
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 1687
HpyF3I CTNAG 6 cut(s) 121, 1197, 1353, 1484, 1827, 1833
HpySE526I ACGT 1 cut(s) 1447
Hsp92II CATG 9 cut(s) 51, 234, 814, 827, 926, 1344, 1547, 1579, 1864
HspAI GCGC 2 cut(s) 851, 894
KflI GGGWCCC 1 cut(s) 595
Ksp22I TGATCA 2 cut(s) 466, 775
Kzo9I GATC 8 cut(s) 59, 325, 434, 466, 618, 775, 1134, 1794
LmnI GCTCC 2 cut(s) 122, 904
Lsp1109I GCAGC 2 cut(s) 55, 1043
LweI GCATC 3 cut(s) 775, 797, 1085
MabI ACCWGGT 1 cut(s) 91
MaeI CTAG 4 cut(s) 6, 188, 1631, 1734
MaeII ACGT 1 cut(s) 1447
MaeIII GTNAC 8 cut(s) 95, 524, 534, 866, 953, 1408, 1736, 1856
MalI GATC 8 cut(s) 61, 327, 436, 468, 620, 777, 1136, 1796
MboI GATC 8 cut(s) 59, 325, 434, 466, 618, 775, 1134, 1794
MflI RGATCY 2 cut(s) 59, 1794
MhlI GDGCHC 3 cut(s) 119, 609, 1624
MlyI GAGTC 4 cut(s) 1003, 1174, 1482, 1636
MmeI TCCRAC 4 cut(s) 453, 623, 1022, 1528
Mph1103I ATGCAT 2 cut(s) 232, 790
MseI TTAA 6 cut(s) 26, 1080, 1304, 1328, 1473, 1562
MslI CAYNNNNRTG 4 cut(s) 52, 793, 927, 1548
MspI CCGG 3 cut(s) 474, 572, 600
MspR9I CCNGG 6 cut(s) 20, 93, 474, 492, 573, 600
Mva1269I GAATGC 2 cut(s) 1539, 1710
MvaI CCWGG 3 cut(s) 20, 93, 492
MvnI CGCG 2 cut(s) 853, 896
MwoI GCNNNNNNNGC 2 cut(s) 236, 1687
NciI CCSGG 3 cut(s) 474, 573, 600
NcoI CCATGG 1 cut(s) 810
NdeI CATATG 1 cut(s) 1852
NdeII GATC 8 cut(s) 59, 325, 434, 466, 618, 775, 1134, 1794
NlaIII CATG 9 cut(s) 51, 234, 814, 827, 926, 1344, 1547, 1579, 1864
NlaIV GGNNCC 2 cut(s) 596, 597
NmuCI GTSAC 4 cut(s) 95, 524, 534, 1408
NsiI ATGCAT 2 cut(s) 232, 790
NspI RCATGY 4 cut(s) 926, 1344, 1579, 1864
NspV TTCGAA 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 112
PciI ACATGT 2 cut(s) 922, 1860
PctI GAATGC 2 cut(s) 1539, 1710
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 3 cut(s) 17, 70, 1058
PleI GAGTC 4 cut(s) 1003, 1174, 1482, 1636
PpsI GAGTC 4 cut(s) 1003, 1174, 1482, 1636
PpuMI RGGWCCY 1 cut(s) 595
PscI ACATGT 2 cut(s) 922, 1860
PsiI TTATAA 2 cut(s) 516, 1395
Psp124BI GAGCTC 2 cut(s) 119, 1624
Psp1406I AACGTT 1 cut(s) 1447
Psp5II RGGWCCY 1 cut(s) 595
Psp6I CCWGG 3 cut(s) 18, 91, 490
PspGI CCWGG 3 cut(s) 18, 91, 490
PspN4I GGNNCC 2 cut(s) 596, 597
PspPI GGNCC 2 cut(s) 595, 1385
PspPPI RGGWCCY 1 cut(s) 595
PspXI VCTCGAGB 1 cut(s) 112
PsuI RGATCY 2 cut(s) 59, 1794
RsaI GTAC 6 cut(s) 358, 560, 716, 1103, 1574, 1697
RsaNI GTAC 6 cut(s) 357, 559, 715, 1102, 1573, 1696
RseI CAYNNNNRTG 4 cut(s) 52, 793, 927, 1548
SacI GAGCTC 2 cut(s) 119, 1624
SalI GTCGAC 1 cut(s) 1177
SaqAI TTAA 6 cut(s) 26, 1080, 1304, 1328, 1473, 1562
SatI GCNGC 3 cut(s) 16, 69, 1057
Sau3AI GATC 8 cut(s) 59, 325, 434, 466, 618, 775, 1134, 1794
Sau96I GGNCC 2 cut(s) 595, 1385
ScaI AGTACT 3 cut(s) 358, 1103, 1697
SchI GAGTC 4 cut(s) 1003, 1174, 1482, 1636
ScrFI CCNGG 6 cut(s) 20, 93, 474, 492, 573, 600
SduI GDGCHC 3 cut(s) 119, 609, 1624
SexAI ACCWGGT 1 cut(s) 91
SfaNI GCATC 3 cut(s) 775, 797, 1085
Sfr274I CTCGAG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 734
SinI GGWCC 2 cut(s) 595, 1385
SlaI CTCGAG 1 cut(s) 112
SmiMI CAYNNNNRTG 4 cut(s) 52, 793, 927, 1548
SmlI CTYRAG 3 cut(s) 112, 1671, 1699
SmoI CTYRAG 3 cut(s) 112, 1671, 1699
SsiI CCGC 1 cut(s) 16
SspI AATATT 1 cut(s) 376
SspMI CTAG 4 cut(s) 6, 188, 1631, 1734
SstI GAGCTC 2 cut(s) 119, 1624
StyD4I CCNGG 6 cut(s) 18, 91, 472, 490, 571, 598
StyI CCWWGG 3 cut(s) 282, 810, 1060
TaaI ACNGT 4 cut(s) 563, 866, 881, 1465
TaiI ACGT 1 cut(s) 1450
TaqI TCGA 9 cut(s) 113, 173, 588, 734, 831, 961, 1128, 1178, 1659
TatI WGTACW 5 cut(s) 356, 558, 1101, 1572, 1695
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 6 cut(s) 26, 1080, 1304, 1328, 1473, 1562
Tru9I TTAA 6 cut(s) 26, 1080, 1304, 1328, 1473, 1562
TscAI CASTG 5 cut(s) 90, 568, 886, 1144, 1470
TseFI GTSAC 4 cut(s) 95, 524, 534, 1408
TseI GCWGC 2 cut(s) 68, 1056
Tsp45I GTSAC 4 cut(s) 95, 524, 534, 1408
TspGWI ACGGA 3 cut(s) 447, 1281, 1886
TspRI CASTG 5 cut(s) 90, 568, 886, 1144, 1470
VpaK11BI GGWCC 2 cut(s) 595, 1385
XapI RAATTY 3 cut(s) 214, 935, 1887
XbaI TCTAGA 1 cut(s) 1630
XceI RCATGY 4 cut(s) 926, 1344, 1579, 1864
XcmI CCANNNNNNNNNTGG 2 cut(s) 206, 1106
XhoI CTCGAG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 1178
XspI CTAG 4 cut(s) 6, 188, 1631, 1734
ZrmI AGTACT 3 cut(s) 358, 1103, 1697
Zsp2I ATGCAT 2 cut(s) 232, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.