Rorug05G0085300

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
7342288 .. 7343154
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0085300.1

Sequence Viewer

Length: 513 bp
ATGGGATCTTGGGTGAGGAAGAGACTGCCATTGCGCCGAAAGCTTCAAACTCAAAGGAGCCTTACCAGGAGGAAATCCATCAAGAAGAGTTCAATTGTCATGGATGCTATGCTCCACATTTACCTACTGAAACTCAAGCTTGAAGCAGCCCACAAAGAGTGCTTAGATCTCATGGCCATCAAAACAAAGTACTTAGATCTAATTAAACATCTTCATGTGCCCGAGGAAGTGAAGGTGGAGAAGATTGAGGAAGGGTTTCATGTAAGAGTGACATGCGAGAAAGCAGAAGACACTTTGGTTTCAATCTTGGAAGCGTTTGATGAAATGGGTCTTAATATTCTGCAAGCTAAAGTTTCCTGCAATAGTTACTTTTCCATGGAAGCCATTGCAGCTCATGTAGCTCAAAATCAAGAATACAAGCTGGATGTGACAGATGTGACCCAAGCAATTATTAAGGCCACCAGAAGCGAGATTAATGCCGCAACTGACGAAGTTGATTTAATAACTAGTTAG

Protein Analysis

170

Amino Acids

19.42

Weight (kDa)

8.38

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 76 - 154 9.9e-22 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 480
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 174
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 4 cut(s) 47, 93, 143, 303
AhlI ACTAGT 1 cut(s) 506
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 6 cut(s) 43, 139, 347, 392, 401, 421
AluI AGCT 6 cut(s) 43, 139, 347, 392, 401, 421
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 2 cut(s) 174, 456
ApeKI GCWGC 2 cut(s) 146, 389
AseI ATTAAT 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 158, 401
BccI CCATC 2 cut(s) 86, 185
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 1 cut(s) 507
BglII AGATCT 2 cut(s) 166, 196
BisI GCNGC 3 cut(s) 147, 390, 480
BlsI GCNGC 3 cut(s) 148, 391, 481
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 222, 375
Bse3DI GCAATG 2 cut(s) 29, 384
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 222, 375
BseGI GGATG 2 cut(s) 109, 430
BseMI GCAATG 2 cut(s) 29, 384
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 2 cut(s) 158, 401
BshFI GGCC 2 cut(s) 176, 458
BsiHKCI CYCGRG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 16
BsnI GGCC 2 cut(s) 176, 458
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 5, 166, 196
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 1 cut(s) 480
BspANI GGCC 2 cut(s) 176, 458
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 29, 384
BssECI CCNNGG 2 cut(s) 222, 375
BssMI GATC 3 cut(s) 5, 166, 196
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 67
Bst6I CTCTTC 2 cut(s) 14, 80
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 163, 193
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 109, 430
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 3 cut(s) 8, 169, 199
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 3 cut(s) 5, 166, 196
BstMWI GCNNNNNNNGC 3 cut(s) 40, 389, 398
BstNI CCWGG 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 65
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 158, 401
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 3 cut(s) 5, 166, 196
BstYI RGATCY 3 cut(s) 5, 166, 196
BsuRI GGCC 2 cut(s) 176, 458
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 2 cut(s) 109, 430
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 190
CviAII CATG 7 cut(s) 100, 172, 215, 260, 273, 376, 395
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 163, 193
DpnI GATC 3 cut(s) 7, 168, 198
DpnII GATC 3 cut(s) 5, 166, 196
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 14, 80
EarI CTCTTC 2 cut(s) 14, 80
Eco130I CCWWGG 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 7 cut(s) 103, 175, 218, 263, 276, 379, 398
FaiI YATR 8 cut(s) 101, 110, 173, 216, 261, 274, 377, 396
FatI CATG 7 cut(s) 99, 171, 214, 259, 272, 375, 394
Fnu4HI GCNGC 3 cut(s) 147, 390, 480
FokI GGATG 2 cut(s) 116, 437
Fsp4HI GCNGC 3 cut(s) 147, 390, 480
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 35
GluI GCNGC 3 cut(s) 147, 390, 480
HaeIII GGCC 2 cut(s) 176, 458
HhaI GCGC 1 cut(s) 36
Hin1II CATG 7 cut(s) 103, 175, 218, 263, 276, 379, 398
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 2 cut(s) 41, 137
HphI GGTGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 82, 410
HpyAV CCTTC 2 cut(s) 226, 245
HpyCH4V TGCA 3 cut(s) 343, 360, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 389, 398
HpyF3I CTNAG 2 cut(s) 163, 193
Hsp92II CATG 7 cut(s) 103, 175, 218, 263, 276, 379, 398
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 3 cut(s) 5, 166, 196
LmnI GCTCC 2 cut(s) 57, 117
LpnPI CCDG 5 cut(s) 52, 79, 370, 407, 475
Lsp1109I GCAGC 2 cut(s) 158, 401
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 4 cut(s) 268, 365, 427, 436
MalI GATC 3 cut(s) 7, 168, 198
MboI GATC 3 cut(s) 5, 166, 196
MboII GAAGA 5 cut(s) 31, 97, 203, 253, 299
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 3 cut(s) 5, 166, 196
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 3 cut(s) 93, 201, 447
MluNI TGGCCA 1 cut(s) 176
MnlI CCTC 4 cut(s) 9, 63, 217, 241
Mox20I TGGCCA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 176
MseI TTAA 5 cut(s) 204, 333, 453, 474, 500
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 67
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 3 cut(s) 40, 389, 398
NcoI CCATGG 1 cut(s) 375
NdeII GATC 3 cut(s) 5, 166, 196
NlaIII CATG 7 cut(s) 103, 175, 218, 263, 276, 379, 398
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 3 cut(s) 268, 427, 436
NspI RCATGY 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 255
PkrI GCNGC 3 cut(s) 148, 391, 481
PshBI ATTAAT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 59
PsuI RGATCY 3 cut(s) 5, 166, 196
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 5 cut(s) 204, 333, 453, 474, 500
SatI GCNGC 3 cut(s) 147, 390, 480
Sau3AI GATC 3 cut(s) 5, 166, 196
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 222
SetI ASST 8 cut(s) 45, 126, 141, 237, 349, 394, 403, 423
SfaNI GCATC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 3 cut(s) 93, 201, 447
SsiI CCGC 1 cut(s) 480
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 375
TasI AATT 3 cut(s) 93, 201, 447
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 482
Tru1I TTAA 5 cut(s) 204, 333, 453, 474, 500
Tru9I TTAA 5 cut(s) 204, 333, 453, 474, 500
TseFI GTSAC 3 cut(s) 268, 427, 436
TseI GCWGC 2 cut(s) 146, 389
Tsp45I GTSAC 3 cut(s) 268, 427, 436
TspDTI ATGAA 3 cut(s) 203, 248, 336
VspI ATTAAT 1 cut(s) 474
XceI RCATGY 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.