Rroxscaffold_1G00053770

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
74969013 .. 74971930
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053770.1

Sequence Viewer

Length: 711 bp
ATGGCTAGCAGTAGCCGTCTGGCCTTAGTTCTTGTCTTTACTATTTCATGCTTCCAGTCTTGTCATGCTGCAAGAAGAAATACACTGAAACCAGGTGATACGCTCAATTCATCGAGCTCCTTAGTCTCCAAAACAGGGAAGTTCACTTTGGGTTTCTTTGAAAATGGAAACTCGAAAACCAGCTATCTAGCAATCTATTATATCAATGCTGGACATTCTATAAATTATGCATGGATTGCCAACCGGAAAACACCCATTTTATACCCAACAGGAGTTCTTACCTTGGACAAGAACAACACATTGAAAGTTACCCAAAATGGTGGTGATCCTCTGCTTCTTTACTCTGCTTCGGAAAGTAGTACCAATAATACCAGTGTTGTTGCTACCCTTTTGGATTCAGGCAATTTCATCCTACAACAAGTGAACTCCGACGGATCAACAAAGAGGGTGTTGTGGCAAAGTTTTGATCATCCTGGAAACACCCTTTTGCCAGGTATGAAGTTAGGTGTTGACCATAAAAATGGTCACATTTGGTCACTTTCGTCATGGTTGAGTCTGTACAACGCAGAACCGGGGGCTTTCACTCTAGATTGGGACCCCGGCGAACACCAGTTGAAGATCAGGCAGCGCGGGAAGGTTTGTTGGAGTAGCGGTGTCTTTACCAGTGGAAGATTCAAGTTTGTACTACTGATGATGATTCCAAGAAGATGA

Protein Analysis

236

Amino Acids

26.03

Weight (kDa)

9.68

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 183 1.7e-27 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 630
AciI CCGC 2 cut(s) 630, 651
AclWI GGATC 2 cut(s) 320, 442
AfaI GTAC 3 cut(s) 361, 560, 684
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 4 cut(s) 161, 304, 616, 676
AjnI CCWGG 3 cut(s) 91, 472, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 2 cut(s) 117, 183
AluI AGCT 2 cut(s) 117, 183
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 2 cut(s) 320, 442
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 68, 625
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 2 cut(s) 573, 600
AsuHPI GGTGA 2 cut(s) 107, 335
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 595
BanII GRGCYC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 55, 637
BciT130I CCWGG 3 cut(s) 93, 474, 492
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 2 cut(s) 573, 600
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 3 cut(s) 6, 188, 587
BisI GCNGC 2 cut(s) 69, 626
BlsI GCNGC 2 cut(s) 70, 627
Bme1390I CCNGG 5 cut(s) 93, 474, 492, 573, 600
Bme18I GGWCC 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 2 cut(s) 596, 597
BmrFI CCNGG 5 cut(s) 93, 474, 492, 573, 600
BmtI GCTAGC 1 cut(s) 9
BpuMI CCSGG 2 cut(s) 573, 600
BsaJI CCNNGG 3 cut(s) 282, 572, 598
BsaWI WCCGGW 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 4 cut(s) 55, 372, 610, 663
BseBI CCWGG 3 cut(s) 93, 474, 492
BseDI CCNNGG 3 cut(s) 282, 572, 598
BseGI GGATG 2 cut(s) 408, 469
BseLI CCNNNNNNNGG 1 cut(s) 135
BseNI ACTGG 4 cut(s) 55, 372, 610, 663
BseXI GCAGC 2 cut(s) 55, 637
Bsh1236I CGCG 1 cut(s) 630
BshFI GGCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 244, 572, 600
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 608
BsnI GGCC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 4 cut(s) 325, 434, 466, 618
BspACI CCGC 2 cut(s) 630, 651
BspANI GGCC 1 cut(s) 23
BspFNI CGCG 1 cut(s) 630
BspLI GGNNCC 2 cut(s) 596, 597
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 2 cut(s) 320, 442
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 4 cut(s) 55, 372, 610, 663
BssECI CCNNGG 3 cut(s) 282, 572, 598
BssMI GATC 4 cut(s) 325, 434, 466, 618
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 3 cut(s) 93, 474, 492
BstAPI GCANNNNNTGC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 25, 121
BstF5I GGATG 2 cut(s) 408, 469
BstFNI CGCG 1 cut(s) 630
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 4 cut(s) 328, 437, 469, 621
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 4 cut(s) 325, 434, 466, 618
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 3 cut(s) 93, 474, 492
BstSCI CCNGG 5 cut(s) 91, 472, 490, 571, 598
BstUI CGCG 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 55, 637
BstXI CCANNNNNNTGG 2 cut(s) 320, 521
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 408, 469
BtsIMutI CAGTG 3 cut(s) 83, 379, 670
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 595
CsiI ACCWGGT 1 cut(s) 91
Csp6I GTAC 3 cut(s) 360, 559, 683
CviAII CATG 4 cut(s) 48, 65, 231, 546
CviJI RGCY 6 cut(s) 5, 15, 23, 117, 183, 578
CviKI_1 RGCY 6 cut(s) 5, 15, 23, 117, 183, 578
CviQI GTAC 3 cut(s) 360, 559, 683
DdeI CTNAG 2 cut(s) 25, 121
DpnI GATC 4 cut(s) 327, 436, 468, 620
DpnII GATC 4 cut(s) 325, 434, 466, 618
Ecl136II GAGCTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 595
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 595
EcoRII CCWGG 3 cut(s) 91, 472, 490
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 4 cut(s) 51, 68, 234, 549
FaqI GGGAC 1 cut(s) 608
FatI CATG 4 cut(s) 47, 64, 230, 545
FauI CCCGC 1 cut(s) 623
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 69, 626
FokI GGATG 2 cut(s) 395, 456
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 69, 626
FspBI CTAG 3 cut(s) 6, 188, 587
GlaI GCGC 1 cut(s) 629
GluI GCNGC 2 cut(s) 69, 626
HaeIII GGCC 1 cut(s) 23
HapII CCGG 3 cut(s) 244, 572, 600
HhaI GCGC 1 cut(s) 630
Hin1II CATG 4 cut(s) 51, 68, 234, 549
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 4 cut(s) 395, 553, 672, 697
HpaII CCGG 3 cut(s) 244, 572, 600
HphI GGTGA 2 cut(s) 107, 335
Hpy166II GTNNAC 3 cut(s) 144, 424, 511
Hpy188I TCNGA 2 cut(s) 352, 430
Hpy188III TCNNGA 1 cut(s) 587
Hpy8I GTNNAC 3 cut(s) 144, 424, 511
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 628
HpyCH4V TGCA 2 cut(s) 71, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 25, 121
Hsp92II CATG 4 cut(s) 51, 68, 234, 549
HspAI GCGC 1 cut(s) 628
KflI GGGWCCC 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 4 cut(s) 325, 434, 466, 618
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 2 cut(s) 55, 637
MabI ACCWGGT 1 cut(s) 91
MaeI CTAG 3 cut(s) 6, 188, 587
MaeIII GTNAC 3 cut(s) 307, 524, 534
MalI GATC 4 cut(s) 327, 436, 468, 620
MboI GATC 4 cut(s) 325, 434, 466, 618
MboII GAAGA 3 cut(s) 87, 628, 681
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 3 cut(s) 106, 223, 403
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 2 cut(s) 453, 623
MnlI CCTC 2 cut(s) 339, 438
Mph1103I ATGCAT 1 cut(s) 232
MslI CAYNNNNRTG 1 cut(s) 519
MspI CCGG 3 cut(s) 244, 572, 600
MspR9I CCNGG 5 cut(s) 93, 474, 492, 573, 600
MvaI CCWGG 3 cut(s) 93, 474, 492
MvnI CGCG 1 cut(s) 630
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 2 cut(s) 573, 600
NdeII GATC 4 cut(s) 325, 434, 466, 618
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 4 cut(s) 51, 68, 234, 549
NlaIV GGNNCC 2 cut(s) 596, 597
NmuCI GTSAC 2 cut(s) 524, 534
NsiI ATGCAT 1 cut(s) 232
PfeI GAWTC 3 cut(s) 395, 672, 697
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 2 cut(s) 70, 627
PleI GAGTC 1 cut(s) 561
PpsI GAGTC 1 cut(s) 561
PpuMI RGGWCCY 1 cut(s) 595
Psp124BI GAGCTC 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 595
Psp6I CCWGG 3 cut(s) 91, 472, 490
PspGI CCWGG 3 cut(s) 91, 472, 490
PspN4I GGNNCC 2 cut(s) 596, 597
PspPI GGNCC 1 cut(s) 595
PspPPI RGGWCCY 1 cut(s) 595
RsaI GTAC 3 cut(s) 361, 560, 684
RsaNI GTAC 3 cut(s) 360, 559, 683
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 119
SatI GCNGC 2 cut(s) 69, 626
Sau3AI GATC 4 cut(s) 325, 434, 466, 618
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 5 cut(s) 93, 474, 492, 573, 600
SduI GDGCHC 1 cut(s) 119
SetI ASST 7 cut(s) 97, 119, 185, 284, 496, 508, 639
SexAI ACCWGGT 1 cut(s) 91
SinI GGWCC 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 519
Sse9I AATT 3 cut(s) 106, 223, 403
SsiI CCGC 2 cut(s) 630, 651
SspMI CTAG 3 cut(s) 6, 188, 587
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 5 cut(s) 91, 472, 490, 571, 598
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 2 cut(s) 113, 173
TasI AATT 3 cut(s) 106, 223, 403
TatI WGTACW 2 cut(s) 558, 682
TfiI GAWTC 3 cut(s) 395, 672, 697
TscAI CASTG 3 cut(s) 90, 379, 670
TseFI GTSAC 2 cut(s) 524, 534
TseI GCWGC 2 cut(s) 68, 625
Tsp45I GTSAC 2 cut(s) 524, 534
TspDTI ATGAA 4 cut(s) 36, 99, 397, 512
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 3 cut(s) 90, 379, 670
VpaK11BI GGWCC 1 cut(s) 595
XbaI TCTAGA 1 cut(s) 586
XspI CTAG 3 cut(s) 6, 188, 587
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.