Rmu_sc0004107.1_g000007

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004107.1
OG0000096
Physical Location & Seq
Forward (+)
40904 .. 41690
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004107.1_g000007.1.cds

Sequence Viewer

Length: 606 bp
atgagagtaattcatagagatttgaaagcaagtaatgttctacttgatgaaagcatgaaccccaaaatttccgattttggaatggcaaggattttcacgaatgatgaacaagaaacaaatactatgaagattgttgggacacgtggttatatgtcccctgagtatattatggggggaaaattttccataaaatctgatgtctatagtttcggtgtgttgatacttgaaatcctaagtggtagaagaaacaacagtttctacaatgatgatcgcgccctcaatttagttggctatgcatgggtattatggaaagaaggtgcaggactagaacgaatggatccaacacttggtgattcatgtgataaagatcatttcttgaggtgcatccatgttggtttgctctgcgtagaggaaaatgcagccagccgaccaaagatgttagatgtgatatctatgctaactaatgaaagcatgtcattgccgatacctacaaaaccagcattttgtacagaaagaaatgtcatcagaactactataggtggaaacggaccggaagtggtggtatctgtaaatggcatctccaattctgattttgatggacgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

201

Amino Acids

22.39

Weight (kDa)

5.43

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AccII CGCG 1 cut(s) 273
AclWI GGATC 2 cut(s) 332, 345
AcsI RAATTY 2 cut(s) 66, 179
AcvI CACGTG 1 cut(s) 143
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 1 cut(s) 508
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 2 cut(s) 25, 227
AlwI GGATC 2 cut(s) 332, 345
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 2 cut(s) 66, 179
Asp700I GAANNNNTTC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 548
BamHI GGATCC 1 cut(s) 337
BbrPI CACGTG 1 cut(s) 143
BbvI GCAGC 1 cut(s) 431
BccI CCATC 1 cut(s) 590
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 2 cut(s) 202, 534
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 339
BmsI GCATC 2 cut(s) 393, 585
BpuEI CTTGAG 1 cut(s) 397
BsaAI YACGTR 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 550
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 366
BseGI GGATG 1 cut(s) 384
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 551
BslFI GGGAC 2 cut(s) 139, 151
BslI CCNNNNNNNGG 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 139, 151
Bsp1407I TGTACA 1 cut(s) 506
Bsp143I GATC 3 cut(s) 268, 337, 367
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 2 cut(s) 332, 345
BsrDI GCAATG 1 cut(s) 476
BsrGI TGTACA 1 cut(s) 506
BssMI GATC 3 cut(s) 268, 337, 367
Bst4CI ACNGT 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 506
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 2 cut(s) 159, 233
BstF5I GGATG 1 cut(s) 384
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 3 cut(s) 271, 340, 370
BstMBI GATC 3 cut(s) 268, 337, 367
BstNSI RCATGY 1 cut(s) 475
BstSFI CTRYAG 2 cut(s) 202, 534
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BtsCI GGATG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 424
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 548
CpoI CGGWCCG 1 cut(s) 548
Csp6I GTAC 1 cut(s) 507
CspI CGGWCCG 1 cut(s) 548
CviAII CATG 5 cut(s) 55, 297, 357, 389, 472
CviJI RGCY 3 cut(s) 291, 422, 426
CviKI_1 RGCY 3 cut(s) 291, 422, 426
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 2 cut(s) 159, 233
DpnI GATC 3 cut(s) 270, 339, 369
DpnII GATC 3 cut(s) 268, 337, 367
DraIII CACNNNGTG 1 cut(s) 350
Eco32I GATATC 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 548
Eco72I CACGTG 1 cut(s) 143
EcoRV GATATC 1 cut(s) 450
EcoT22I ATGCAT 1 cut(s) 298
FaeI CATG 5 cut(s) 58, 300, 360, 392, 475
FaqI GGGAC 2 cut(s) 139, 151
FatI CATG 5 cut(s) 54, 296, 356, 388, 471
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 274
GluI GCNGC 1 cut(s) 420
HapII CCGG 1 cut(s) 551
HhaI GCGC 1 cut(s) 275
Hin1II CATG 5 cut(s) 58, 300, 360, 392, 475
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 1 cut(s) 353
HpaII CCGG 1 cut(s) 551
HphI GGTGA 1 cut(s) 362
Hpy188I TCNGA 4 cut(s) 73, 196, 527, 589
Hpy188III TCNNGA 2 cut(s) 97, 376
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 2 cut(s) 142, 601
HpyCH4V TGCA 4 cut(s) 296, 320, 384, 419
HpyF3I CTNAG 2 cut(s) 159, 233
HpySE526I ACGT 2 cut(s) 142, 601
Hsp92II CATG 5 cut(s) 58, 300, 360, 392, 475
HspAI GCGC 1 cut(s) 273
Kzo9I GATC 3 cut(s) 268, 337, 367
LpnPI CCDG 5 cut(s) 171, 306, 436, 510, 564
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 2 cut(s) 393, 585
MaeI CTAG 1 cut(s) 326
MaeII ACGT 2 cut(s) 142, 601
MalI GATC 3 cut(s) 270, 339, 369
MboI GATC 3 cut(s) 268, 337, 367
MboII GAAGA 2 cut(s) 139, 255
MflI RGATCY 1 cut(s) 337
MluCI AATT 5 cut(s) 9, 66, 179, 280, 583
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 3 cut(s) 287, 372, 403
Mph1103I ATGCAT 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 181
MseI TTAA 1 cut(s) 604
MspI CCGG 1 cut(s) 551
MvnI CGCG 1 cut(s) 273
NdeII GATC 3 cut(s) 268, 337, 367
NlaIII CATG 5 cut(s) 58, 300, 360, 392, 475
NlaIV GGNNCC 1 cut(s) 339
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 353
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 1 cut(s) 421
PmaCI CACGTG 1 cut(s) 143
PmlI CACGTG 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 143
PspCI CACGTG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 548
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
Rsr2I CGGWCCG 1 cut(s) 548
RsrII CGGWCCG 1 cut(s) 548
SaqAI TTAA 1 cut(s) 604
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 3 cut(s) 268, 337, 367
Sau96I GGNCC 1 cut(s) 548
SetI ASST 6 cut(s) 145, 319, 383, 490, 541, 604
SfaNI GCATC 2 cut(s) 393, 585
SfcI CTRYAG 2 cut(s) 202, 534
SinI GGWCC 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 5 cut(s) 9, 66, 179, 280, 583
SspMI CTAG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 2 cut(s) 145, 604
TasI AATT 5 cut(s) 9, 66, 179, 280, 583
TatI WGTACW 1 cut(s) 506
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 1 cut(s) 604
Tru9I TTAA 1 cut(s) 604
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 6 cut(s) 63, 71, 120, 140, 345, 480
TspGWI ACGGA 1 cut(s) 561
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 2 cut(s) 66, 179
XceI RCATGY 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 181
XspI CTAG 1 cut(s) 326
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.