Rh5CG193800

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
19269584 .. 19270326
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG193800.1

Sequence Viewer

Length: 273 bp
ATGGATCCAACACTAGCTGATTCGTGTACTAACAAAGATCAACTGTTAAGATGCGTTCAAGTTGGTCTTCTATGCGTGGAGGATAGTGCAGCGAATCGACCTACCATGTCAGATGTGCTCTCCGGGTTGACAAATGAAAGCTCACCGTTACCTGCACCTACAAAGCCAGCATTTTCTACAGATAGACATGCGGTCTCCAGTACTGTAGTGGAAAAGGAACCACAAACTTTATCTGTAAATGATCTTACCATTTCCGCTTGTGATGGACGTTAA

Protein Analysis

90

Amino Acids

9.52

Weight (kDa)

4.51

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 45 - 90 1.9e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AciI CCGC 2 cut(s) 191, 255
AclWI GGATC 1 cut(s) 12
AfaI GTAC 2 cut(s) 28, 202
AgsI TTSAA 1 cut(s) 59
AhdI GACNNNNNGTC 1 cut(s) 191
AluBI AGCT 2 cut(s) 17, 141
AluI AGCT 2 cut(s) 17, 141
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 135
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 257
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 14
BfmI CTRYAG 2 cut(s) 177, 204
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 124
BmeRI GACNNNNNGTC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 6, 219
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 101
BsgI GTGCAG 2 cut(s) 108, 138
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 199
Bso31I GGTCTC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 4, 37, 241
BspACI CCGC 2 cut(s) 191, 255
BspLI GGNNCC 2 cut(s) 6, 219
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 198
BssMI GATC 3 cut(s) 4, 37, 241
Bst4CI ACNGT 3 cut(s) 45, 147, 205
BstC8I GCNNGC 1 cut(s) 168
BstKTI GATC 3 cut(s) 7, 40, 244
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 3 cut(s) 4, 37, 241
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 2 cut(s) 177, 204
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 27, 201
CviAII CATG 2 cut(s) 106, 188
CviJI RGCY 3 cut(s) 17, 141, 166
CviKI_1 RGCY 3 cut(s) 17, 141, 166
CviQI GTAC 2 cut(s) 27, 201
DpnI GATC 3 cut(s) 6, 39, 243
DpnII GATC 3 cut(s) 4, 37, 241
DriI GACNNNNNGTC 1 cut(s) 191
Eam1105I GACNNNNNGTC 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 199
FaeI CATG 2 cut(s) 109, 191
FaiI YATR 3 cut(s) 73, 107, 189
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 2 cut(s) 105, 187
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 14
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 181
HapII CCGG 1 cut(s) 123
Hin1II CATG 2 cut(s) 109, 191
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 2 cut(s) 20, 94
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 2 cut(s) 27, 129
Hpy188I TCNGA 1 cut(s) 112
Hpy8I GTNNAC 2 cut(s) 27, 129
HpyCH4III ACNGT 3 cut(s) 45, 147, 205
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 89, 155
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 2 cut(s) 109, 191
Kzo9I GATC 3 cut(s) 4, 37, 241
LpnPI CCDG 4 cut(s) 136, 165, 180, 211
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 147
MalI GATC 3 cut(s) 6, 39, 243
MboI GATC 3 cut(s) 4, 37, 241
MboII GAAGA 1 cut(s) 59
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 1 cut(s) 73
MseI TTAA 2 cut(s) 47, 271
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 124
NciI CCSGG 1 cut(s) 124
NdeII GATC 3 cut(s) 4, 37, 241
NlaIII CATG 2 cut(s) 109, 191
NlaIV GGNNCC 2 cut(s) 6, 219
NspI RCATGY 1 cut(s) 191
PfeI GAWTC 2 cut(s) 20, 94
PkrI GCNGC 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 6, 219
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 28, 202
RsaNI GTAC 2 cut(s) 27, 201
SaqAI TTAA 2 cut(s) 47, 271
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 3 cut(s) 4, 37, 241
ScaI AGTACT 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 120
SetI ASST 6 cut(s) 19, 103, 143, 154, 160, 271
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 2 cut(s) 177, 204
SsiI CCGC 2 cut(s) 191, 255
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 3 cut(s) 45, 147, 205
TaiI ACGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 97
TatI WGTACW 2 cut(s) 26, 200
TfiI GAWTC 2 cut(s) 20, 94
Tru1I TTAA 2 cut(s) 47, 271
Tru9I TTAA 2 cut(s) 47, 271
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 150
XceI RCATGY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 1 cut(s) 14
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.