Rorug05G0087100

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
7519162 .. 7519774
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0087100.1

Sequence Viewer

Length: 564 bp
ATGGAAGAACAAGCCGCAAAATTCATGATGTTTGTGGTGTTTGAGCAAGATGCTAATGAGGGAATGGAGGTACCTAATGGTAAAGTTCGTCATTTGACCTTTATGCATACATCTGGGAGTAAACTTTCAGATACTTTTCTCAATGGTACAAATTCGCGTAGCCTTGTAGCTTTAAGCAACGTTGACCCAAAGGTAATTATACAGTTGAATTGCCTTAGGTCAATAAGCTTAAGTCTGATGGGAGAAATTCCAAGGGAGATAGGAGGATTGATACATTTGAGGTATCTCGATTTATCTTATAGTTGGAATTTGGAGGAATTACCTGACACTATGAGTAATTTATACAATCTGCAAACCTTGCGATTGGTTGGTTGCTCTGGTCTCAAGAAAGTAGATTTGGGAAGGCTTATAAATTTAAGGGCTAAATACTATTTAGTACCCTGTGGTATGGACCCAACATCGATTCAGTCCCTCGACTTTCAATTTCATCAAAAATACCCCTGCAATATCATCTTCACATCCAATAGGTCCCTCCGTCAGGCAACCGTCAATTTCAGACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

21.3

Weight (kDa)

8.71

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 85 - 142 3.7e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 1 cut(s) 157
AciI CCGC 1 cut(s) 15
AclI AACGTT 1 cut(s) 180
AcsI RAATTY 5 cut(s) 20, 151, 246, 307, 412
AfaI GTAC 3 cut(s) 72, 148, 438
AfiI CCNNNNNNNGG 1 cut(s) 538
AflII CTTAAG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 208, 482
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 2 cut(s) 170, 228
AluI AGCT 2 cut(s) 170, 228
Alw26I GTCTC 1 cut(s) 386
ApoI RAATTY 5 cut(s) 20, 151, 246, 307, 412
Asp718I GGTACC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 451, 528
AvaII GGWCC 2 cut(s) 451, 528
AxyI CCTNAGG 1 cut(s) 215
BanI GGYRCC 1 cut(s) 70
BccI CCATC 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 386
BfrI CTTAAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 451, 528
BmgT120I GGNCC 2 cut(s) 451, 528
BmiI GGNNCC 3 cut(s) 72, 453, 530
BmsI GCATC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 368
Bsa29I ATCGAT 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse21I CCTNAGG 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 461
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 518
BseLI CCNNNNNNNGG 1 cut(s) 538
Bsh1236I CGCG 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 70
BshVI ATCGAT 1 cut(s) 461
BslFI GGGAC 2 cut(s) 454, 514
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 2 cut(s) 454, 514
Bso31I GGTCTC 1 cut(s) 386
BspACI CCGC 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 461
BspFNI CGCG 1 cut(s) 157
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 72, 453, 530
BspT107I GGYRCC 1 cut(s) 70
BspTI CTTAAG 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 2 cut(s) 204, 547
BstAFI CTTAAG 1 cut(s) 229
BstAPI GCANNNNNTGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 215
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 1 cut(s) 518
BstFNI CGCG 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 386
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstUI CGCG 1 cut(s) 157
Bsu15I ATCGAT 1 cut(s) 461
Bsu36I CCTNAGG 1 cut(s) 215
BsuTUI ATCGAT 1 cut(s) 461
BtsCI GGATG 1 cut(s) 518
CciI TCATGA 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 451, 528
ClaI ATCGAT 1 cut(s) 461
Csp6I GTAC 3 cut(s) 71, 147, 437
CviAII CATG 1 cut(s) 25
CviJI RGCY 6 cut(s) 14, 162, 170, 228, 406, 422
CviKI_1 RGCY 6 cut(s) 14, 162, 170, 228, 406, 422
CviQI GTAC 3 cut(s) 71, 147, 437
DdeI CTNAG 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 386
Eco47I GGWCC 2 cut(s) 451, 528
Eco81I CCTNAGG 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 1 cut(s) 28
FaiI YATR 9 cut(s) 26, 104, 108, 200, 300, 332, 343, 410, 449
FaqI GGGAC 2 cut(s) 454, 514
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 505
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
Hin1II CATG 1 cut(s) 28
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 1 cut(s) 463
Hpy166II GTNNAC 2 cut(s) 122, 184
Hpy188I TCNGA 3 cut(s) 130, 237, 557
Hpy188III TCNNGA 3 cut(s) 25, 287, 385
Hpy8I GTNNAC 2 cut(s) 122, 184
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 204, 547
HpyCH4IV ACGT 2 cut(s) 180, 559
HpyCH4V TGCA 3 cut(s) 106, 352, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 2 cut(s) 180, 559
Hsp92II CATG 1 cut(s) 28
KpnI GGTACC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 99, 336, 363, 454, 514, 524
LweI GCATC 1 cut(s) 40
MaeII ACGT 2 cut(s) 180, 559
MboII GAAGA 2 cut(s) 17, 505
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 7 cut(s) 52, 61, 257, 273, 307, 482, 542
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 4 cut(s) 173, 230, 416, 562
MspCI CTTAAG 1 cut(s) 229
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 358
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 3 cut(s) 72, 453, 530
NsiI ATGCAT 1 cut(s) 108
PagI TCATGA 1 cut(s) 24
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 528
PsiI TTATAA 1 cut(s) 410
Psp1406I AACGTT 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 72, 453, 530
PspPI GGNCC 2 cut(s) 451, 528
PspPPI RGGWCCY 1 cut(s) 528
RsaI GTAC 3 cut(s) 72, 148, 438
RsaNI GTAC 3 cut(s) 71, 147, 437
SaqAI TTAA 4 cut(s) 173, 230, 416, 562
SatI GCNGC 1 cut(s) 15
Sau96I GGNCC 2 cut(s) 451, 528
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 2 cut(s) 451, 528
SmlI CTYRAG 2 cut(s) 229, 383
SmoI CTYRAG 2 cut(s) 229, 383
SsiI CCGC 1 cut(s) 15
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 204, 547
TaiI ACGT 2 cut(s) 183, 562
TaqI TCGA 3 cut(s) 288, 461, 474
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 4 cut(s) 173, 230, 416, 562
Tru9I TTAA 4 cut(s) 173, 230, 416, 562
TspDTI ATGAA 2 cut(s) 13, 476
TspGWI ACGGA 1 cut(s) 524
Vha464I CTTAAG 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 451, 528
XagI CCTNNNNNAGG 1 cut(s) 536
XapI RAATTY 5 cut(s) 20, 151, 246, 307, 412
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.