Rmu_sc0006827.1_g000016

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006827.1
Physical Location & Seq
Forward (+)
46809 .. 49613
2805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006827.1_g000016.1.cds

Sequence Viewer

Length: 726 bp
atgggatgctgctgcaaatcggaggcgaagggatgctgggtgcgcgggctgcaggttagtgggttgctgggggcgcgggctgcaggtcggactgctgggatctgcaaggcgcgggcctggattgagtgtgcgctggctgtcgaccggtgtgcgggagctgcgggggtagactgcaggggcgagctgcgggggcaggctgcggtcttgcgagttgggcagggttgcagcgaggaggtaggctggtgggctggtgcgcaggggctgcacggcaagcacagcaggaggctgcggtgtgcagctagggttgaaggctgcggcaggtttttgtggtggaatgccaagtcgctgggattgggcggccgcctaggcagcctaggcgggcgactaggcggttgggcggcactgtctaggcgggcatgggtgttatggaaagaaggtgtaggactaaaactacgggatccaacactcggcgattcatgtgataaagatcatttgttgaggtgcatctatgttggtttgctctgcgtagaggaaaatgcagccagtcgaccaaagatgttaaatgtgatatctatgctgactaatgaaagcatgtcactgccagtacctacaaaaccaacattttgtacagaaagaaatgtcatcacaacaactgtagatggagacggaccggaagtggtggtattggtaaatggtatctccaattctgattttgatggacgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

241

Amino Acids

25.64

Weight (kDa)

9.05

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 255
Acc36I ACCTGC 3 cut(s) 43, 74, 309
AccI GTMKAC 3 cut(s) 141, 168, 547
AccII CGCG 3 cut(s) 45, 76, 112
AclWI GGATC 3 cut(s) 107, 452, 465
AcoI YGGCCR 1 cut(s) 358
AfaI GTAC 2 cut(s) 606, 628
AfiI CCNNNNNNNGG 2 cut(s) 151, 467
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 3 cut(s) 158, 184, 299
AluI AGCT 3 cut(s) 158, 184, 299
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 3 cut(s) 107, 452, 465
AlwNI CAGNNNCTG 1 cut(s) 262
AoxI GGCC 2 cut(s) 114, 358
AsiGI ACCGGT 1 cut(s) 144
AspA2I CCTAGG 2 cut(s) 364, 373
AspLEI GCGC 5 cut(s) 45, 76, 112, 133, 256
AspS9I GGNCC 2 cut(s) 114, 668
AvaII GGWCC 1 cut(s) 668
AvrII CCTAGG 2 cut(s) 364, 373
BamHI GGATCC 1 cut(s) 457
BccI CCATC 2 cut(s) 653, 710
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 5 cut(s) 300, 365, 374, 386, 408
BfmI CTRYAG 4 cut(s) 50, 81, 172, 654
BfuAI ACCTGC 3 cut(s) 43, 74, 309
BglI GCCNNNNNGGC 1 cut(s) 366
BlnI CCTAGG 2 cut(s) 364, 373
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 668
BmgT120I GGNCC 2 cut(s) 114, 668
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 23, 513
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 364, 373
BsaWI WCCGGW 2 cut(s) 144, 670
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 467
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 543, 602
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 364, 373
BseGI GGATG 2 cut(s) 11, 38
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 151, 467
BseNI ACTGG 2 cut(s) 543, 602
BseRI GAGGAG 1 cut(s) 245
BseX3I CGGCCG 1 cut(s) 358
BseYI CCCAGC 4 cut(s) 36, 67, 95, 346
BsgI GTGCAG 2 cut(s) 248, 315
Bsh1236I CGCG 3 cut(s) 45, 76, 112
Bsh1285I CGRYCG 2 cut(s) 145, 361
BshFI GGCC 2 cut(s) 116, 360
BshTI ACCGGT 1 cut(s) 144
BsiEI CGRYCG 2 cut(s) 145, 361
BsiSI CCGG 2 cut(s) 145, 671
BslI CCNNNNNNNGG 2 cut(s) 151, 467
BsmAI GTCTC 1 cut(s) 657
BsmBI CGTCTC 1 cut(s) 657
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 2 cut(s) 116, 360
Bsp1407I TGTACA 1 cut(s) 626
Bsp143I GATC 3 cut(s) 99, 457, 487
BspANI GGCC 2 cut(s) 116, 360
BspFNI CGCG 3 cut(s) 45, 76, 112
BspLI GGNNCC 1 cut(s) 459
BspMAI CTGCAG 3 cut(s) 54, 85, 176
BspMI ACCTGC 3 cut(s) 43, 74, 309
BspPI GGATC 3 cut(s) 107, 452, 465
BsrFI RCCGGY 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 626
BsrI ACTGG 2 cut(s) 543, 602
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 364, 373
BssMI GATC 3 cut(s) 99, 457, 487
BssT1I CCWWGG 2 cut(s) 364, 373
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 405, 655
BstAPI GCANNNNNTGC 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 626
BstC8I GCNNGC 9 cut(s) 47, 78, 114, 135, 182, 195, 272, 380, 414
BstF5I GGATG 2 cut(s) 11, 38
BstFNI CGCG 3 cut(s) 45, 76, 112
BstHHI GCGC 5 cut(s) 45, 76, 112, 133, 256
BstKTI GATC 3 cut(s) 102, 460, 490
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 3 cut(s) 99, 457, 487
BstMCI CGRYCG 2 cut(s) 145, 361
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 4 cut(s) 50, 81, 172, 654
BstUI CGCG 3 cut(s) 45, 76, 112
BstX2I RGATCY 2 cut(s) 99, 457
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 2 cut(s) 99, 457
BstZI CGGCCG 1 cut(s) 358
BsuRI GGCC 2 cut(s) 116, 360
BtsCI GGATG 2 cut(s) 11, 38
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 2 cut(s) 401, 596
BveI ACCTGC 3 cut(s) 43, 74, 309
Cac8I GCNNGC 9 cut(s) 47, 78, 114, 135, 182, 195, 272, 380, 414
CaiI CAGNNNCTG 1 cut(s) 262
CciNI GCGGCCGC 1 cut(s) 358
CfoI GCGC 5 cut(s) 45, 76, 112, 133, 256
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 114, 668
CpoI CGGWCCG 1 cut(s) 668
Csp6I GTAC 2 cut(s) 605, 627
CspAI ACCGGT 1 cut(s) 144
CspI CGGWCCG 1 cut(s) 668
CviAII CATG 3 cut(s) 417, 477, 592
CviQI GTAC 2 cut(s) 605, 627
DpnI GATC 3 cut(s) 101, 459, 489
DpnII GATC 3 cut(s) 99, 457, 487
EaeI YGGCCR 1 cut(s) 358
EagI CGGCCG 1 cut(s) 358
EclXI CGGCCG 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 364, 373
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 668
Eco52I CGGCCG 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 364, 373
ErhI CCWWGG 2 cut(s) 364, 373
Esp3I CGTCTC 1 cut(s) 657
FaeI CATG 3 cut(s) 420, 480, 595
FaiI YATR 6 cut(s) 418, 427, 478, 510, 575, 593
FatI CATG 3 cut(s) 416, 476, 591
FauI CCCGC 8 cut(s) 38, 69, 105, 145, 154, 180, 371, 405
FblI GTMKAC 3 cut(s) 141, 168, 547
FokI GGATG 2 cut(s) 18, 45
FspBI CTAG 5 cut(s) 300, 365, 374, 386, 408
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 5 cut(s) 44, 75, 111, 132, 255
GsaI CCCAGC 4 cut(s) 40, 71, 99, 350
HaeIII GGCC 2 cut(s) 116, 360
HapII CCGG 2 cut(s) 145, 671
HhaI GCGC 5 cut(s) 45, 76, 112, 133, 256
Hin1II CATG 3 cut(s) 420, 480, 595
Hin6I GCGC 5 cut(s) 43, 74, 110, 131, 254
HinP1I GCGC 5 cut(s) 43, 74, 110, 131, 254
HincII GTYRAC 2 cut(s) 142, 548
HindII GTYRAC 2 cut(s) 142, 548
HinfI GANTC 1 cut(s) 473
HpaII CCGG 2 cut(s) 145, 671
Hpy166II GTNNAC 3 cut(s) 142, 169, 548
Hpy188I TCNGA 3 cut(s) 22, 90, 709
Hpy8I GTNNAC 3 cut(s) 142, 169, 548
HpyAV CCTTC 3 cut(s) 22, 302, 428
HpyCH4III ACNGT 2 cut(s) 405, 655
HpyCH4IV ACGT 1 cut(s) 721
HpySE526I ACGT 1 cut(s) 721
Hsp92II CATG 3 cut(s) 420, 480, 595
HspAI GCGC 5 cut(s) 43, 74, 110, 131, 254
Kzo9I GATC 3 cut(s) 99, 457, 487
LmnI GCTCC 1 cut(s) 155
LweI GCATC 2 cut(s) 23, 513
MaeI CTAG 5 cut(s) 300, 365, 374, 386, 408
MaeII ACGT 1 cut(s) 721
MaeIII GTNAC 1 cut(s) 594
MalI GATC 3 cut(s) 101, 459, 489
MboI GATC 3 cut(s) 99, 457, 487
MflI RGATCY 2 cut(s) 99, 457
MluCI AATT 1 cut(s) 703
MmeI TCCRAC 2 cut(s) 68, 485
MnlI CCTC 6 cut(s) 16, 223, 226, 276, 492, 523
MseI TTAA 2 cut(s) 560, 724
MspI CCGG 2 cut(s) 145, 671
MspR9I CCNGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 3 cut(s) 45, 76, 112
NdeII GATC 3 cut(s) 99, 457, 487
NlaIII CATG 3 cut(s) 420, 480, 595
NlaIV GGNNCC 1 cut(s) 459
NmeAIII GCCGAG 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 594
NotI GCGGCCGC 1 cut(s) 358
NsbI TGCGCA 1 cut(s) 255
NspI RCATGY 1 cut(s) 595
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 473
PinAI ACCGGT 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 4 cut(s) 36, 67, 95, 346
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 2 cut(s) 114, 668
PstI CTGCAG 3 cut(s) 54, 85, 176
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 2 cut(s) 99, 457
RsaI GTAC 2 cut(s) 606, 628
RsaNI GTAC 2 cut(s) 605, 627
Rsr2I CGGWCCG 1 cut(s) 668
RsrII CGGWCCG 1 cut(s) 668
SalI GTCGAC 2 cut(s) 140, 546
SaqAI TTAA 2 cut(s) 560, 724
Sau3AI GATC 3 cut(s) 99, 457, 487
Sau96I GGNCC 2 cut(s) 114, 668
ScrFI CCNGG 1 cut(s) 118
SfaNI GCATC 2 cut(s) 23, 513
SfcI CTRYAG 4 cut(s) 50, 81, 172, 654
SinI GGWCC 1 cut(s) 668
Sse9I AATT 1 cut(s) 703
SspMI CTAG 5 cut(s) 300, 365, 374, 386, 408
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 2 cut(s) 364, 373
TaaI ACNGT 2 cut(s) 405, 655
TaiI ACGT 1 cut(s) 724
TaqI TCGA 2 cut(s) 141, 547
TasI AATT 1 cut(s) 703
TatI WGTACW 1 cut(s) 626
TauI GCSGC 4 cut(s) 318, 360, 363, 401
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 2 cut(s) 560, 724
Tru9I TTAA 2 cut(s) 560, 724
TscAI CASTG 2 cut(s) 408, 603
TseFI GTSAC 1 cut(s) 594
Tsp45I GTSAC 1 cut(s) 594
TspDTI ATGAA 2 cut(s) 465, 600
TspGWI ACGGA 1 cut(s) 681
TspRI CASTG 2 cut(s) 408, 603
VpaK11BI GGWCC 1 cut(s) 668
XceI RCATGY 1 cut(s) 595
XmaJI CCTAGG 2 cut(s) 364, 373
XmiI GTMKAC 3 cut(s) 141, 168, 547
XspI CTAG 5 cut(s) 300, 365, 374, 386, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.