Rh5BG174700

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
18319854 .. 18337832
17979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG174700.1

Sequence Viewer

Length: 525 bp
ATGGCTGGCGGTGTCGATTTGATTTGCTTGGTGTTTATGTGGAGCTTGTGGAGTGCTGCTTGTAATGGTGCAACAAACACCCTGAAACCAGATGAAAATCCTGTATCAGAGTGGCTGCTAACCACAATAGGGCGACTAAAAGACTTTGATGAATCAATTGATATTGCAAAAGCAGATTCCTGTTATGGGTATAACACTGAAGGTGGATGCCAGATTTGGGACCAGCCAAAGTGTCGGCGTTCTACTGCGGTATTTGAGCAACAAAATGGTTACTTTAATCCAACAGGTGCTAGCGGCACTACTGCAACATCAACAAGTGATTCAAATACAAGTCTCAGTATTAGTGACTGTAAGGCTGCTTGTTGGGCAGATTGTAACTGTATTGGATTCCTCTTTCTGTTTCCTAATCAGACTGGATGTCGGTATTGGACTGGAAACTTGAAATTCATTGCAGACAGCATAAGTTATAATTCAAATGTTGTATATGTTTTAGCAACAAAGTCAGTCGACAGCAGCACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

18.94

Weight (kDa)

4.57

Isoelectric Point (pI)

24.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AccI GTMKAC 1 cut(s) 507
AciI CCGC 3 cut(s) 9, 248, 294
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 219
AfiI CCNNNNNNNGG 3 cut(s) 129, 186, 217
AgsI TTSAA 3 cut(s) 324, 442, 474
AhdI GACNNNNNGTC 1 cut(s) 417
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 338
ApeKI GCWGC 4 cut(s) 56, 115, 356, 513
ApoI RAATTY 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 290
AvaII GGWCC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 43, 102, 343
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 291
BisI GCNGC 5 cut(s) 57, 116, 295, 357, 514
BlsI GCNGC 5 cut(s) 58, 117, 296, 358, 515
Bme18I GGWCC 1 cut(s) 220
BmeRI GACNNNNNGTC 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 221
BmsI GCATC 1 cut(s) 197
BmtI GCTAGC 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 96
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 186, 217
Bse1I ACTGG 2 cut(s) 418, 436
Bse3DI GCAATG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 96
BseGI GGATG 2 cut(s) 212, 422
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 3 cut(s) 129, 186, 217
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 2 cut(s) 418, 436
BseXI GCAGC 3 cut(s) 43, 102, 343
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 3 cut(s) 129, 186, 217
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 233
BspACI CCGC 3 cut(s) 9, 248, 294
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 221
BspOI GCTAGC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 2 cut(s) 418, 436
Bst4CI ACNGT 2 cut(s) 350, 380
BstC8I GCNNGC 2 cut(s) 7, 292
BstDEI CTNAG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 212, 422
BstMAI GTCTC 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 43, 102, 343
BtsCI GGATG 2 cut(s) 212, 422
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 7, 292
Cfr13I GGNCC 1 cut(s) 220
CviJI RGCY 5 cut(s) 5, 45, 115, 226, 356
CviKI_1 RGCY 5 cut(s) 5, 45, 115, 226, 356
DdeI CTNAG 1 cut(s) 335
DriI GACNNNNNGTC 1 cut(s) 417
Eam1105I GACNNNNNGTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 219
FaiI YATR 7 cut(s) 38, 186, 192, 461, 468, 484, 486
FaqI GGGAC 1 cut(s) 233
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 5 cut(s) 57, 116, 295, 357, 514
FokI GGATG 2 cut(s) 219, 429
Fsp4HI GCNGC 5 cut(s) 57, 116, 295, 357, 514
FspBI CTAG 1 cut(s) 291
GluI GCNGC 5 cut(s) 57, 116, 295, 357, 514
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 4 cut(s) 152, 176, 320, 387
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 2 cut(s) 109, 411
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 2 cut(s) 350, 380
HpyCH4V TGCA 4 cut(s) 71, 167, 305, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 335
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 9 cut(s) 95, 102, 114, 193, 224, 236, 270, 399, 417
Lsp1109I GCAGC 3 cut(s) 43, 102, 343
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 269, 344, 374
MfeI CAATTG 1 cut(s) 156
MluCI AATT 3 cut(s) 156, 443, 469
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 1 cut(s) 401
MseI TTAA 1 cut(s) 276
MunI CAATTG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 365
NheI GCTAGC 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 344
PfeI GAWTC 4 cut(s) 152, 176, 320, 387
PkrI GCNGC 5 cut(s) 58, 117, 296, 358, 515
PsiI TTATAA 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 220
SalI GTCGAC 1 cut(s) 506
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 5 cut(s) 57, 116, 295, 357, 514
Sau96I GGNCC 1 cut(s) 220
SetI ASST 3 cut(s) 47, 205, 289
SfaNI GCATC 1 cut(s) 197
SinI GGWCC 1 cut(s) 220
Sse9I AATT 3 cut(s) 156, 443, 469
SsiI CCGC 3 cut(s) 9, 248, 294
SspMI CTAG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 350, 380
TaqI TCGA 2 cut(s) 15, 507
TasI AATT 3 cut(s) 156, 443, 469
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 4 cut(s) 152, 176, 320, 387
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 4 cut(s) 56, 115, 356, 513
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 108, 165, 436
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.