Rh5CG194200

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
19308136 .. 19308711
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG194200.1

Sequence Viewer

Length: 576 bp
ATGATCAACTTATTGTGCTTGCTCATCAGTTTCTCAAGCTTCTGTACCTGTCATGGTGTAGGCGTGCAGTTGCACTGTTCATTGGAGACACGCTTTATAAGGCTCGAGGAATTGAGGGGAAGCCCTCAATTTCTCGAGCTTTATGGTCTCCGCTTCGGGGGAGTTTACGTTGGGCCAGGGATGAAATTAGGTTTACGTGATGGTCTAACCAGCAACACTATGTCGATTTGGAGTTGGCGGGAAAGTCAGAACAGCCCGGGGCCAGGGTCTTTCAGCCTTTATTGGGATTCCGGCACACGCCAATTGCAAGTTAGAAGAAACGGGGATCTTTGGTGGACTAGCGAACCATACGAGTATGCTCATTTCCGTAATAAATCCAAGGTCTACAATTTTAGCGTGGTTTCATATGAGAATGGAGACTACTTCAGTTACACTGTCGTTGGTGATCCAAATGGCAGATCAGCCTGGGTGCTGGACACAGGTGGGGAGCTTTATGAAGTTATCTATAACATTTCTATTGCGTCAGCAGGTCACTGTGATGGCTATAAAAATGGGACAATATTTAAGTGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

191

Amino Acids

21.58

Weight (kDa)

6.41

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 518
AccI GTMKAC 1 cut(s) 384
AciI CCGC 2 cut(s) 151, 238
AclWI GGATC 2 cut(s) 333, 440
AcuI CTGAAG 1 cut(s) 409
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 3 cut(s) 157, 263, 283
AjnI CCWGG 3 cut(s) 175, 262, 464
AluBI AGCT 3 cut(s) 39, 139, 490
AluI AGCT 3 cut(s) 39, 139, 490
Alw26I GTCTC 3 cut(s) 80, 152, 411
AlwI GGATC 2 cut(s) 333, 440
Ama87I CYCGRG 3 cut(s) 104, 134, 256
AoxI GGCC 2 cut(s) 173, 260
AspS9I GGNCC 2 cut(s) 173, 260
AsuC2I CCSGG 2 cut(s) 257, 258
AsuHPI GGTGA 1 cut(s) 455
AvaI CYCGRG 3 cut(s) 104, 134, 256
BccI CCATC 2 cut(s) 194, 533
BciT130I CCWGG 3 cut(s) 177, 264, 466
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 257, 258
BcoDI GTCTC 3 cut(s) 80, 152, 411
BfaI CTAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 518
Bme1390I CCNGG 5 cut(s) 177, 257, 258, 264, 466
BmeT110I CYCGRG 3 cut(s) 104, 134, 256
BmgT120I GGNCC 2 cut(s) 173, 260
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 5 cut(s) 177, 257, 258, 264, 466
BpuEI CTTGAG 1 cut(s) 19
BpuMI CCSGG 2 cut(s) 257, 258
BsaAI YACGTR 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 6 cut(s) 176, 256, 257, 263, 378, 465
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 263, 283
BseBI CCWGG 3 cut(s) 177, 264, 466
BseDI CCNNGG 6 cut(s) 176, 256, 257, 263, 378, 465
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 3 cut(s) 157, 263, 283
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 2 cut(s) 175, 262
BsiHKCI CYCGRG 3 cut(s) 104, 134, 256
BsiSI CCGG 2 cut(s) 257, 291
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 3 cut(s) 157, 263, 283
BsmAI GTCTC 3 cut(s) 80, 152, 411
BsmFI GGGAC 1 cut(s) 568
BsnI GGCC 2 cut(s) 175, 262
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 3 cut(s) 104, 134, 256
Bsp143I GATC 4 cut(s) 3, 325, 445, 458
BspACI CCGC 2 cut(s) 151, 238
BspANI GGCC 2 cut(s) 175, 262
BspLI GGNNCC 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 518
BspPI GGATC 2 cut(s) 333, 440
BspTNI GGTCTC 1 cut(s) 152
BssECI CCNNGG 6 cut(s) 176, 256, 257, 263, 378, 465
BssMI GATC 4 cut(s) 3, 325, 445, 458
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 3 cut(s) 177, 264, 466
Bst4CI ACNGT 3 cut(s) 77, 436, 536
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 20, 65
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 4 cut(s) 6, 328, 448, 461
BstMAI GTCTC 3 cut(s) 80, 152, 411
BstMBI GATC 4 cut(s) 3, 325, 445, 458
BstNI CCWGG 3 cut(s) 177, 264, 466
BstSCI CCNGG 5 cut(s) 175, 255, 256, 262, 464
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 2 cut(s) 175, 262
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 3 cut(s) 73, 432, 532
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 2 cut(s) 20, 65
Cfr13I GGNCC 2 cut(s) 173, 260
Cfr9I CCCGGG 1 cut(s) 256
CseI GACGC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 45
CviAII CATG 1 cut(s) 53
CviQI GTAC 1 cut(s) 45
DpnI GATC 4 cut(s) 5, 327, 447, 460
DpnII GATC 4 cut(s) 3, 325, 445, 458
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 409
Eco88I CYCGRG 3 cut(s) 104, 134, 256
EcoRII CCWGG 3 cut(s) 175, 262, 464
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 1 cut(s) 56
FaqI GGGAC 1 cut(s) 568
FatI CATG 1 cut(s) 52
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 406
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 384
FokI GGATG 1 cut(s) 193
FspBI CTAG 1 cut(s) 339
HaeIII GGCC 2 cut(s) 175, 262
HapII CCGG 2 cut(s) 257, 291
HgaI GACGC 1 cut(s) 510
Hin1II CATG 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 1 cut(s) 287
HpaII CCGG 2 cut(s) 257, 291
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 4 cut(s) 166, 194, 336, 385
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 4 cut(s) 166, 194, 336, 385
HpyCH4III ACNGT 3 cut(s) 77, 436, 536
HpyCH4IV ACGT 2 cut(s) 168, 196
HpyCH4V TGCA 3 cut(s) 67, 73, 307
HpySE526I ACGT 2 cut(s) 168, 196
Hsp92II CATG 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 325, 445, 458
LmnI GCTCC 1 cut(s) 487
MaeI CTAG 1 cut(s) 339
MaeII ACGT 2 cut(s) 168, 196
MaeIII GTNAC 2 cut(s) 428, 530
MalI GATC 4 cut(s) 5, 327, 447, 460
MboI GATC 4 cut(s) 3, 325, 445, 458
MboII GAAGA 1 cut(s) 327
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 1 cut(s) 325
MluCI AATT 5 cut(s) 110, 128, 185, 302, 388
MnlI CCTC 3 cut(s) 100, 108, 135
MseI TTAA 1 cut(s) 564
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 2 cut(s) 257, 291
MspR9I CCNGG 5 cut(s) 177, 257, 258, 264, 466
MunI CAATTG 1 cut(s) 302
MvaI CCWGG 3 cut(s) 177, 264, 466
NciI CCSGG 2 cut(s) 257, 258
NdeI CATATG 1 cut(s) 406
NdeII GATC 4 cut(s) 3, 325, 445, 458
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 530
PaeR7I CTCGAG 2 cut(s) 104, 134
PfeI GAWTC 1 cut(s) 287
Ppu21I YACGTR 1 cut(s) 197
PsiI TTATAA 1 cut(s) 98
Psp6I CCWGG 3 cut(s) 175, 262, 464
PspGI CCWGG 3 cut(s) 175, 262, 464
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 2 cut(s) 173, 260
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 537
SaqAI TTAA 1 cut(s) 564
Sau3AI GATC 4 cut(s) 3, 325, 445, 458
Sau96I GGNCC 2 cut(s) 173, 260
ScrFI CCNGG 5 cut(s) 177, 257, 258, 264, 466
Sfr274I CTCGAG 2 cut(s) 104, 134
SlaI CTCGAG 2 cut(s) 104, 134
SmaI CCCGGG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 3 cut(s) 34, 104, 134
SmoI CTYRAG 3 cut(s) 34, 104, 134
Sse9I AATT 5 cut(s) 110, 128, 185, 302, 388
SsiI CCGC 2 cut(s) 151, 238
SspI AATATT 1 cut(s) 561
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 5 cut(s) 175, 255, 256, 262, 464
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 3 cut(s) 77, 436, 536
TaiI ACGT 2 cut(s) 171, 199
TaqI TCGA 3 cut(s) 105, 135, 224
TasI AATT 5 cut(s) 110, 128, 185, 302, 388
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 3 cut(s) 80, 439, 539
TseFI GTSAC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 4 cut(s) 69, 197, 393, 510
TspGWI ACGGA 1 cut(s) 356
TspMI CCCGGG 1 cut(s) 256
TspRI CASTG 3 cut(s) 80, 439, 539
XhoI CTCGAG 2 cut(s) 104, 134
XmaI CCCGGG 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.