RchiOBHm_Chr5g0025171

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
19148279 .. 19148677
399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30486

Sequence Viewer

Length: 318 bp
ATGTATGCATGGGTGTTATGGAAAGAAGGTGTAGGACTAGAACTACTGGATCCAACACTCGGCGATTCATGTGATAAAGATCATTTGTTGAGGTGCATCTATGTTGGTTTGCTCTGCGTAGAGGAAAATGCAGCCAGTCGACCAAAGATGTTAAATGTGATATCTATGCTGACTAATGAAAGCATGTCACTGCCAGTACCTACAAAACCAACATTTTGTACAGAAAGAAATGTCATCACAACTACTGTAGATGGAAACGGACCGGAAGTGGTGGTATTGGTAAATGGTATCTCCAATTCTGATTTTGATGGACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.52

Weight (kDa)

4.53

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AclWI GGATC 2 cut(s) 44, 57
AfaI GTAC 2 cut(s) 198, 220
AfiI CCNNNNNNNGG 1 cut(s) 59
AlwI GGATC 2 cut(s) 44, 57
ApeKI GCWGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 260
AvaII GGWCC 1 cut(s) 260
BamHI GGATCC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 245, 302
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 51, 135, 194
Bse8I GATNNNNATC 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 59
BseNI ACTGG 3 cut(s) 51, 135, 194
BseXI GCAGC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 218
Bsp143I GATC 2 cut(s) 49, 79
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 2 cut(s) 44, 57
BsrGI TGTACA 1 cut(s) 218
BsrI ACTGG 3 cut(s) 51, 135, 194
BssMI GATC 2 cut(s) 49, 79
Bst4CI ACNGT 1 cut(s) 247
BstAUI TGTACA 1 cut(s) 218
BstKTI GATC 2 cut(s) 52, 82
BstMBI GATC 2 cut(s) 49, 79
BstNSI RCATGY 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 260
CpoI CGGWCCG 1 cut(s) 260
Csp6I GTAC 2 cut(s) 197, 219
CspI CGGWCCG 1 cut(s) 260
CviAII CATG 3 cut(s) 9, 69, 184
CviJI RGCY 1 cut(s) 134
CviKI_1 RGCY 1 cut(s) 134
CviQI GTAC 2 cut(s) 197, 219
DpnI GATC 2 cut(s) 51, 81
DpnII GATC 2 cut(s) 49, 79
Eco32I GATATC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 260
EcoRV GATATC 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 10
FaeI CATG 3 cut(s) 12, 72, 187
FaiI YATR 7 cut(s) 6, 10, 19, 70, 102, 167, 185
FatI CATG 3 cut(s) 8, 68, 183
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 38
GluI GCNGC 1 cut(s) 132
HapII CCGG 1 cut(s) 263
Hin1II CATG 3 cut(s) 12, 72, 187
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 8, 96, 131
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 3 cut(s) 12, 72, 187
Kzo9I GATC 2 cut(s) 49, 79
LpnPI CCDG 4 cut(s) 32, 148, 207, 276
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 186
MalI GATC 2 cut(s) 51, 81
MboI GATC 2 cut(s) 49, 79
MflI RGATCY 1 cut(s) 49
MluCI AATT 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 84, 115
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 2 cut(s) 152, 316
MspI CCGG 1 cut(s) 263
NdeII GATC 2 cut(s) 49, 79
NlaIII CATG 3 cut(s) 12, 72, 187
NlaIV GGNNCC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 10
NspI RCATGY 1 cut(s) 187
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 2 cut(s) 198, 220
RsaNI GTAC 2 cut(s) 197, 219
Rsr2I CGGWCCG 1 cut(s) 260
RsrII CGGWCCG 1 cut(s) 260
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 152, 316
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 49, 79
Sau96I GGNCC 1 cut(s) 260
SetI ASST 4 cut(s) 31, 95, 202, 316
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 246
SgeI CNNG 9 cut(s) 21, 50, 59, 71, 81, 147, 196, 206, 275
SinI GGWCC 1 cut(s) 260
Sse9I AATT 1 cut(s) 295
SspMI CTAG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 295
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 152, 316
Tru9I TTAA 2 cut(s) 152, 316
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 2 cut(s) 57, 192
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 260
XceI RCATGY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.