Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000096

Physical Location & Seq

Genomic Coordinates Forward (+)

19209824 .. 19215008

Gene Structure 5185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGAGTTCGTTGCGGTTTCAGTTGCCTAATAGTCTCAACTTGTCCTTCCTCATTTTTGCAATCTTATGGACTTATCATGAGGCAGCAAGGGACACACTTAAACTAGGGGACACTCTCAATTCATCGAGTTCCTTGGTTTCTGCAAAGGGAAAGTTCACTATGTGTTTCTATGTAAATGATGAAAATTCCAACTCCAGCTACCTAGCTGCATGGCAGACGGGAAGTAGAAATCACGCATGGATTGCCAACCGATACACACCAGTATTATACCCTTCCGGAGTTCTAACATTGGACATGAATAAAACATTAAAAATTATGCACAAAGGTGGTGATCCTGTGGTGCTTTTCCGGGCTTCTGAAACTAACAGTATTCACAGTACTAGTAGTGTTGTGGCTACTCTGTTGGATTCTGGAAATTTTATTGTGCAAGAACTGAACTATGATGGAACAATGAGGCAGGTACTGTGGCAAAGTTTTGATTATCCTACAGACACCCTTTTGCCAGGCATGAAAGTAGGAGTTAACCACAAAAATGGCCACATTTGGTTTCTTTCAGCATGGTCAGGTGAGGAACAACCAGCACCAGGGCCTTTCACCCTTGATTGGGACCCTAGTGGACGTGAACTGAAAATAAAGCGACGTGCGGTGGTTTATTGGACCAGTGGAATCTTTAGAGATGGGCAATTCGAATTTATGAAACCTTATGATGAATTGGGTACTCTCAGGTATAAGTTTAGCATTGTTTCGAATGAGAATGAAGACTACTTCACTTACACTAGTGCTAGTGTCAATCAAAGCTACGGACCACAATGGGTGCTAAACATCTTTGGGCGACTCCTTGATTTAAATGGAAATGTTATTGCGCCAGCAGATCAGTGTTATGGCTTTACCACCGATGGAGGGTGCCAGAGACGGGACTATCCCAGTTGCAGGCATATTGGTGACACATTTGTTGAAACGAATGGTTTCTTCAGATCACTCACATCCAATATGACAACGAAGCATGATTCAAATACAAGTCTCACCCTTAGTGATTGTAAGGCAGCTTGTTGGGAGGATTGTGACTGTCTTGGATTCATGACTCTCTTCGAAAATCAGACTGGATGTGAATTTTGGGTCGGAAACTGGACCTTTAGTTCACGTGACCTCTTTGGTTATGCTAATCCAAGAATTTTTGTCCTATCTGGATTATCTCGCAATGATACAAACAGTGCAGATACAACCAACGAAGAATCAGATACTAACAGTTGGATATGGATTGGTACTTCCATTGCTGCTGCTCTGTTATTAATGGTGCTTTGCATCTTGTGTTATCTCCTAAGAAGAAGAAAATCCCTCCTTTCAGGGAAATGCCAGCAAAAGATTGAGAATGAATTGCTAGATTTGGTGCAATCTGATAAATCGCTTGATGCTGAGGGGCTTCCTAATGATGGAAAGATGGGACATAATGATTTAAGTGCATATACTTATGCATCTGTCTTGGCTGCTACAAGCAACTTTTCTGATGAAAACAAACTTGGAGAGGGAGGATTTGGACCTGTTTATAGGGGGAAGTCGTGGACAGGAAGAGACATAGCTGTGAAGAGACTTTCTAGATGTTCAGGGCAAGGAACATTAGAGTTTAAGAATGAATTGATACTAATATCTGAACTCCAACATACTAACCTTGTTCAACTTCTGGGATTTTGCATTCACGGGGAAGAGAGGATGTTGATATATGAGTATATGCCAAACAAAAGCTTGGACTTCTTCTTATTCGATACAACCAGACGGATGCTATTAGATTGGAATAAGCGTTTCAGTATAATAGAAGGAATAGCTCAAGGATTGCTTTATTTGCACAAATACTCCAGGGTGAGGGTAATTCATAGAGATTTAAAAGCTAGTAACATTCTACTTGATGAAAACATGATTCCCAGAATATCTGACTTTGGTTTGGCAAGGATTTTCATGCATGATGAACCAGAAGCAAATACTCATAGGGTTGTCGGTACACATGGTTACATGTCTCCTGAGTATGCCATGGAGGGAATTTTCTCCACAAAATCTGATGTCTACAGTTTTGGTGTGCTAATGCTTGAAATCATAAGTGGAAGGAAAAGCAGTAGTTTCAACGATAATGATCATGTGTTGAATATAGTAGGATATGCATGGGAGTTGTGGAAACAAGGTCTTGGGTTACAATTAATGGATCCAACACTGTGCAGCTCATATATTGAAGATCAATTGTTGAGATGCTTCCATGTTGGTCTGCTTTGTGTGGAAGAAAAGGCAGTTGATCGACCCACCATGTCTGATGTCATATCTATGCTAACAAATGAAGGCATGTCACCACCTGCACCTACAAAACCAGCATTTTGTACGGGAAGAAAAGTCGTTGGGAATGGTAAAGATGGAAATCGATCAGAATCAGTAAATGATATATCGGATTATGAATTTGAGGGACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

816

Amino Acids

91.96

Weight (kDa)

5.54

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	80 - 187	3.6e-24	D-mannose binding lectin
Pkinase	PF00069	501 - 709	5.3e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	503 - 770	3.6e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000096)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica	MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica	Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis	pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis	RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata	RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora	Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa	Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha	Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana	Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2344
Acc36I	ACCTGC	2 cut(s)	448, 2344
AccB1I	GGYRCC	1 cut(s)	903
AccI	GTMKAC	1 cut(s)	2055
AccIII	TCCGGA	1 cut(s)	275
AciI	CCGC	2 cut(s)	13, 644
AclWI	GGATC	3 cut(s)	326, 2186, 2199
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	7 cut(s)	184, 415, 689, 1109, 1170, 2031, 2435
AcuI	CTGAAG	1 cut(s)	955
AcvI	CACGTG	1 cut(s)	1142
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	6 cut(s)	379, 462, 718, 1264, 1993, 2362
AfiI	CCNNNNNNNGG	8 cut(s)	584, 603, 604, 900, 913, 930, 1430, 1857
AflIII	ACRYGT	1 cut(s)	2004
AgsI	TTSAA	7 cut(s)	956, 1011, 1673, 2081, 2113, 2134, 2219
AhlI	ACTAGT	2 cut(s)	380, 776
AjiI	CACGTC	2 cut(s)	620, 641
AjnI	CCWGG	3 cut(s)	502, 583, 1850
AjuI	GAANNNNNNNTTGG	2 cut(s)	1500, 1532
AleI	CACNNNNGTG	1 cut(s)	324
AloI	GAACNNNNNNTCC	2 cut(s)	1120, 1152
AluBI	AGCT	9 cut(s)	198, 206, 798, 1046, 1577, 1740, 1820, 1883, 2208
AluI	AGCT	9 cut(s)	198, 206, 798, 1046, 1577, 1740, 1820, 1883, 2208
Alw26I	GTCTC	6 cut(s)	38, 904, 1025, 1563, 1579, 2013
AlwI	GGATC	3 cut(s)	326, 2186, 2199
AlwNI	CAGNNNCTG	1 cut(s)	463
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	2 cut(s)	535, 587
ApeKI	GCWGC	7 cut(s)	83, 206, 1043, 1274, 1277, 1484, 2205
ApoI	RAATTY	7 cut(s)	184, 415, 689, 1109, 1170, 2031, 2435
AseI	ATTAAT	2 cut(s)	1289, 2186
Asp700I	GAANNNNTTC	1 cut(s)	965
AspLEI	GCGC	1 cut(s)	865
AspS9I	GGNCC	6 cut(s)	587, 607, 657, 803, 1128, 1535
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	7 cut(s)	341, 578, 586, 953, 1015, 1867, 2322
AsuII	TTCGAA	3 cut(s)	687, 746, 1089
AvaII	GGWCC	5 cut(s)	607, 657, 803, 1128, 1535
BalI	TGGCCA	1 cut(s)	537
BamHI	GGATCC	1 cut(s)	2191
BanI	GGYRCC	1 cut(s)	903
BbrPI	CACGTG	1 cut(s)	1142
BbsI	GAAGAC	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	1413
BbvI	GCAGC	7 cut(s)	95, 193, 1055, 1261, 1264, 1471, 2217
BccI	CCATC	6 cut(s)	437, 671, 890, 1424, 1432, 2387
BciT130I	CCWGG	3 cut(s)	504, 585, 1852
BclI	TGATCA	1 cut(s)	2122
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	6 cut(s)	38, 904, 1025, 1563, 1579, 2013
BcuI	ACTAGT	2 cut(s)	380, 776
BfaI	CTAG	9 cut(s)	104, 203, 381, 612, 777, 783, 1379, 1593, 1884
BfmI	CTRYAG	2 cut(s)	486, 2056
BfuAI	ACCTGC	2 cut(s)	448, 2344
BisI	GCNGC	7 cut(s)	84, 207, 1044, 1275, 1278, 1485, 2206
BlsI	GCNGC	7 cut(s)	85, 208, 1045, 1276, 1279, 1486, 2207
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	4 cut(s)	350, 504, 585, 1852
Bme18I	GGWCC	5 cut(s)	607, 657, 803, 1128, 1535
BmgBI	CACGTC	2 cut(s)	620, 641
BmgT120I	GGNCC	6 cut(s)	587, 607, 657, 803, 1128, 1535
BmiI	GGNNCC	4 cut(s)	608, 609, 905, 2193
BmrFI	CCNGG	4 cut(s)	350, 504, 585, 1852
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	5 cut(s)	1311, 1399, 1481, 1764, 2225
BmuI	ACTGGG	1 cut(s)	918
BpiI	GAAGAC	1 cut(s)	765
BpmI	CTGGAG	2 cut(s)	178, 1834
Bpu10I	CCTNAGC	1 cut(s)	1413
Bpu14I	TTCGAA	3 cut(s)	687, 746, 1089
BpuEI	CTTGAG	1 cut(s)	1806
BpuMI	CCSGG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	2401
BsaAI	YACGTR	1 cut(s)	1142
BsaBI	GATNNNNATC	3 cut(s)	2121, 2397, 2407
BsaJI	CCNNGG	4 cut(s)	132, 584, 1851, 2022
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	1832, 1862
Bsc4I	CCNNNNNNNGG	8 cut(s)	584, 603, 604, 900, 913, 930, 1430, 1857
Bse1I	ACTGG	5 cut(s)	260, 660, 924, 1105, 1130
Bse3DI	GCAATG	2 cut(s)	1204, 1269
Bse8I	GATNNNNATC	3 cut(s)	2121, 2397, 2407
BseAI	TCCGGA	1 cut(s)	275
BseBI	CCWGG	3 cut(s)	504, 585, 1852
BseCI	ATCGAT	1 cut(s)	2401
BseDI	CCNNGG	4 cut(s)	132, 584, 1851, 2022
BseGI	GGATG	4 cut(s)	983, 1109, 1713, 1779
BseJI	GATNNNNATC	3 cut(s)	2121, 2397, 2407
BseLI	CCNNNNNNNGG	8 cut(s)	584, 603, 604, 900, 913, 930, 1430, 1857
BseMI	GCAATG	2 cut(s)	1204, 1269
BseMII	CTCAG	3 cut(s)	736, 1404, 2004
BseNI	ACTGG	5 cut(s)	260, 660, 924, 1105, 1130
BseXI	GCAGC	7 cut(s)	95, 193, 1055, 1261, 1264, 1471, 2217
BsgI	GTGCAG	3 cut(s)	1233, 2224, 2322
BshFI	GGCC	2 cut(s)	537, 589
BshNI	GGYRCC	1 cut(s)	903
BshVI	ATCGAT	1 cut(s)	2401
BsiSI	CCGG	2 cut(s)	276, 349
BslFI	GGGAC	5 cut(s)	104, 122, 620, 929, 1455
BslI	CCNNNNNNNGG	8 cut(s)	584, 603, 604, 900, 913, 930, 1430, 1857
BsmAI	GTCTC	6 cut(s)	38, 904, 1025, 1563, 1579, 2013
BsmBI	CGTCTC	1 cut(s)	904
BsmFI	GGGAC	5 cut(s)	104, 122, 620, 929, 1455
BsmI	GAATGC	1 cut(s)	1689
BsnI	GGCC	2 cut(s)	537, 589
Bsp119I	TTCGAA	3 cut(s)	687, 746, 1089
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	8 cut(s)	331, 871, 974, 2122, 2191, 2221, 2278, 2402
Bsp19I	CCATGG	1 cut(s)	2022
BspACI	CCGC	2 cut(s)	13, 644
BspANI	GGCC	2 cut(s)	537, 589
BspCNI	CTCAG	3 cut(s)	735, 1405, 2005
BspDI	ATCGAT	1 cut(s)	2401
BspEI	TCCGGA	1 cut(s)	275
BspHI	TCATGA	2 cut(s)	76, 1077
BspLI	GGNNCC	4 cut(s)	608, 609, 905, 2193
BspMI	ACCTGC	2 cut(s)	448, 2344
BspPI	GGATC	3 cut(s)	326, 2186, 2199
BspT104I	TTCGAA	3 cut(s)	687, 746, 1089
BspT107I	GGYRCC	1 cut(s)	903
BsrDI	GCAATG	2 cut(s)	1204, 1269
BsrI	ACTGG	5 cut(s)	260, 660, 924, 1105, 1130
BssECI	CCNNGG	4 cut(s)	132, 584, 1851, 2022
BssMI	GATC	8 cut(s)	331, 871, 974, 2122, 2191, 2221, 2278, 2402
BssT1I	CCWWGG	2 cut(s)	132, 2022
Bst2UI	CCWGG	3 cut(s)	504, 585, 1852
Bst4CI	ACNGT	8 cut(s)	368, 377, 465, 1067, 1211, 1247, 2060, 2202
Bst6I	CTCTTC	4 cut(s)	1091, 1561, 1577, 1695
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	1142
BstBI	TTCGAA	3 cut(s)	687, 746, 1089
BstC8I	GCNNGC	3 cut(s)	867, 932, 1355
BstDEI	CTNAG	5 cut(s)	722, 1028, 1319, 1413, 2013
BstDSI	CCRYGG	1 cut(s)	2022
BstF5I	GGATG	4 cut(s)	983, 1109, 1713, 1779
BstHHI	GCGC	1 cut(s)	865
BstKTI	GATC	8 cut(s)	334, 874, 977, 2125, 2194, 2224, 2281, 2405
BstMAI	GTCTC	6 cut(s)	38, 904, 1025, 1563, 1579, 2013
BstMBI	GATC	8 cut(s)	331, 871, 974, 2122, 2191, 2221, 2278, 2402
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 1837
BstNI	CCWGG	3 cut(s)	504, 585, 1852
BstNSI	RCATGY	2 cut(s)	2008, 2329
BstSCI	CCNGG	4 cut(s)	348, 502, 583, 1850
BstSFI	CTRYAG	2 cut(s)	486, 2056
BstV1I	GCAGC	7 cut(s)	95, 193, 1055, 1261, 1264, 1471, 2217
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	2191
BstXI	CCANNNNNNTGG	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	2191
Bsu15I	ATCGAT	1 cut(s)	2401
BsuRI	GGCC	2 cut(s)	537, 589
BsuTUI	ATCGAT	1 cut(s)	2401
BtgI	CCRYGG	1 cut(s)	2022
BtrI	CACGTC	2 cut(s)	620, 641
BtsCI	GGATG	4 cut(s)	983, 1109, 1713, 1779
BtsIMutI	CAGTG	4 cut(s)	667, 881, 1216, 2198
BveI	ACCTGC	2 cut(s)	448, 2344
Cac8I	GCNNGC	3 cut(s)	867, 932, 1355
CaiI	CAGNNNCTG	1 cut(s)	463
CciI	TCATGA	2 cut(s)	76, 1077
CfoI	GCGC	1 cut(s)	865
Cfr13I	GGNCC	6 cut(s)	587, 607, 657, 803, 1128, 1535
ClaI	ATCGAT	1 cut(s)	2401
Csp6I	GTAC	6 cut(s)	378, 461, 717, 1263, 1992, 2361
CviQI	GTAC	6 cut(s)	378, 461, 717, 1263, 1992, 2361
DdeI	CTNAG	5 cut(s)	722, 1028, 1319, 1413, 2013
DpnI	GATC	8 cut(s)	333, 873, 976, 2124, 2193, 2223, 2280, 2404
DpnII	GATC	8 cut(s)	331, 871, 974, 2122, 2191, 2221, 2278, 2402
DraI	TTTAAA	2 cut(s)	846, 1878
DraIII	CACNNNGTG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	4 cut(s)	1091, 1561, 1577, 1695
EarI	CTCTTC	4 cut(s)	1091, 1561, 1577, 1695
Eco130I	CCWWGG	2 cut(s)	132, 2022
Eco47I	GGWCC	5 cut(s)	607, 657, 803, 1128, 1535
Eco57I	CTGAAG	1 cut(s)	955
Eco72I	CACGTG	1 cut(s)	1142
EcoO109I	RGGNCCY	2 cut(s)	587, 607
EcoRII	CCWGG	3 cut(s)	502, 583, 1850
EcoT14I	CCWWGG	2 cut(s)	132, 2022
EcoT22I	ATGCAT	3 cut(s)	1474, 1956, 2152
ErhI	CCWWGG	2 cut(s)	132, 2022
Esp3I	CGTCTC	1 cut(s)	904
FalI	AAGNNNNNCTT	2 cut(s)	1815, 1847
FaqI	GGGAC	5 cut(s)	104, 122, 620, 929, 1455
FbaI	TGATCA	1 cut(s)	2122
FblI	GTMKAC	1 cut(s)	2055
Fnu4HI	GCNGC	7 cut(s)	84, 207, 1044, 1275, 1278, 1485, 2206
FokI	GGATG	4 cut(s)	970, 1116, 1720, 1786
Fsp4HI	GCNGC	7 cut(s)	84, 207, 1044, 1275, 1278, 1485, 2206
FspBI	CTAG	9 cut(s)	104, 203, 381, 612, 777, 783, 1379, 1593, 1884
GlaI	GCGC	1 cut(s)	864
GluI	GCNGC	7 cut(s)	84, 207, 1044, 1275, 1278, 1485, 2206
GsuI	CTGGAG	2 cut(s)	178, 1834
HaeIII	GGCC	2 cut(s)	537, 589
HapII	CCGG	2 cut(s)	276, 349
HhaI	GCGC	1 cut(s)	865
Hin6I	GCGC	1 cut(s)	863
HinP1I	GCGC	1 cut(s)	863
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	1738
HinfI	GANTC	9 cut(s)	407, 666, 834, 1007, 1074, 1081, 1232, 1912, 2408
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	2 cut(s)	276, 349
HphI	GGTGA	7 cut(s)	341, 578, 586, 953, 1015, 1867, 2322
Hpy166II	GTNNAC	8 cut(s)	156, 523, 617, 623, 1139, 1560, 1994, 2056
Hpy188III	TCNNGA	7 cut(s)	77, 276, 411, 1078, 1185, 1593, 2012
Hpy8I	GTNNAC	8 cut(s)	156, 523, 617, 623, 1139, 1560, 1994, 2056
Hpy99I	CGWCG	1 cut(s)	642
HpyAV	CCTTC	5 cut(s)	55, 282, 1805, 2088, 2315
HpyCH4III	ACNGT	8 cut(s)	368, 377, 465, 1067, 1211, 1247, 2060, 2202
HpyCH4IV	ACGT	4 cut(s)	619, 640, 1141, 2446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 1837
HpyF3I	CTNAG	5 cut(s)	722, 1028, 1319, 1413, 2013
HpySE526I	ACGT	4 cut(s)	619, 640, 1141, 2446
HspAI	GCGC	1 cut(s)	863
KflI	GGGWCCC	1 cut(s)	607
Kpn2I	TCCGGA	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	2122
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	8 cut(s)	331, 871, 974, 2122, 2191, 2221, 2278, 2402
Lsp1109I	GCAGC	7 cut(s)	95, 193, 1055, 1261, 1264, 1471, 2217
LweI	GCATC	5 cut(s)	1311, 1399, 1481, 1764, 2225
MaeI	CTAG	9 cut(s)	104, 203, 381, 612, 777, 783, 1379, 1593, 1884
MaeII	ACGT	4 cut(s)	619, 640, 1141, 2446
MaeIII	GTNAC	7 cut(s)	941, 1061, 1142, 1886, 2000, 2178, 2328
MalI	GATC	8 cut(s)	333, 873, 976, 2124, 2193, 2223, 2280, 2404
MboI	GATC	8 cut(s)	331, 871, 974, 2122, 2191, 2221, 2278, 2402
MfeI	CAATTG	1 cut(s)	2225
MflI	RGATCY	1 cut(s)	2191
MlsI	TGGCCA	1 cut(s)	537
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	828, 1075
MmeI	TCCRAC	6 cut(s)	213, 384, 1099, 1229, 1678, 2219
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	3 cut(s)	1474, 1956, 2152
MroI	TCCGGA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	965
MscI	TGGCCA	1 cut(s)	537
MslI	CAYNNNNRTG	5 cut(s)	324, 531, 939, 1577, 2306
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	2 cut(s)	276, 349
MspR9I	CCNGG	4 cut(s)	350, 504, 585, 1852
MunI	CAATTG	1 cut(s)	2225
Mva1269I	GAATGC	1 cut(s)	1689
MvaI	CCWGG	3 cut(s)	504, 585, 1852
MwoI	GCNNNNNNNGC	2 cut(s)	242, 1837
NciI	CCSGG	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	2022
NdeII	GATC	8 cut(s)	331, 871, 974, 2122, 2191, 2221, 2278, 2402
NlaIV	GGNNCC	4 cut(s)	608, 609, 905, 2193
NmuCI	GTSAC	4 cut(s)	941, 1061, 1142, 2328
NsiI	ATGCAT	3 cut(s)	1474, 1956, 2152
NspI	RCATGY	2 cut(s)	2008, 2329
NspV	TTCGAA	3 cut(s)	687, 746, 1089
OliI	CACNNNNGTG	1 cut(s)	324
PagI	TCATGA	2 cut(s)	76, 1077
PaqCI	CACCTGC	1 cut(s)	2344
PciI	ACATGT	1 cut(s)	2004
PctI	GAATGC	1 cut(s)	1689
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	7 cut(s)	407, 666, 1007, 1074, 1232, 1912, 2408
PkrI	GCNGC	7 cut(s)	85, 208, 1045, 1276, 1279, 1486, 2207
PleI	GAGTC	2 cut(s)	828, 1075
PmaCI	CACGTG	1 cut(s)	1142
PmlI	CACGTG	1 cut(s)	1142
PpsI	GAGTC	2 cut(s)	828, 1075
Ppu21I	YACGTR	1 cut(s)	1142
PpuMI	RGGWCCY	1 cut(s)	607
PscI	ACATGT	1 cut(s)	2004
PshBI	ATTAAT	2 cut(s)	1289, 2186
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	3 cut(s)	502, 583, 1850
PspCI	CACGTG	1 cut(s)	1142
PspGI	CCWGG	3 cut(s)	502, 583, 1850
PspN4I	GGNNCC	4 cut(s)	608, 609, 905, 2193
PspPI	GGNCC	6 cut(s)	587, 607, 657, 803, 1128, 1535
PspPPI	RGGWCCY	1 cut(s)	607
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	2191
RsaI	GTAC	6 cut(s)	379, 462, 718, 1264, 1993, 2362
RsaNI	GTAC	6 cut(s)	378, 461, 717, 1263, 1992, 2361
RseI	CAYNNNNRTG	5 cut(s)	324, 531, 939, 1577, 2306
SatI	GCNGC	7 cut(s)	84, 207, 1044, 1275, 1278, 1485, 2206
Sau3AI	GATC	8 cut(s)	331, 871, 974, 2122, 2191, 2221, 2278, 2402
Sau96I	GGNCC	6 cut(s)	587, 607, 657, 803, 1128, 1535
ScaI	AGTACT	1 cut(s)	379
SchI	GAGTC	2 cut(s)	828, 1075
ScrFI	CCNGG	4 cut(s)	350, 504, 585, 1852
SfaNI	GCATC	5 cut(s)	1311, 1399, 1481, 1764, 2225
SfcI	CTRYAG	2 cut(s)	486, 2056
SfuI	TTCGAA	3 cut(s)	687, 746, 1089
SinI	GGWCC	5 cut(s)	607, 657, 803, 1128, 1535
SmiI	ATTTAAAT	1 cut(s)	846
SmiMI	CAYNNNNRTG	5 cut(s)	324, 531, 939, 1577, 2306
SmlI	CTYRAG	1 cut(s)	1821
SmoI	CTYRAG	1 cut(s)	1821
SpeI	ACTAGT	2 cut(s)	380, 776
SsiI	CCGC	2 cut(s)	13, 644
SspMI	CTAG	9 cut(s)	104, 203, 381, 612, 777, 783, 1379, 1593, 1884
StyD4I	CCNGG	4 cut(s)	348, 502, 583, 1850
StyI	CCWWGG	2 cut(s)	132, 2022
SwaI	ATTTAAAT	1 cut(s)	846
TaaI	ACNGT	8 cut(s)	368, 377, 465, 1067, 1211, 1247, 2060, 2202
TaiI	ACGT	4 cut(s)	622, 643, 1144, 2449
TaqI	TCGA	7 cut(s)	125, 687, 746, 1089, 1758, 2281, 2401
TatI	WGTACW	1 cut(s)	377
TfiI	GAWTC	7 cut(s)	407, 666, 1007, 1074, 1232, 1912, 2408
TscAI	CASTG	4 cut(s)	667, 881, 1216, 2205
TseFI	GTSAC	4 cut(s)	941, 1061, 1142, 2328
TseI	GCWGC	7 cut(s)	83, 206, 1043, 1274, 1277, 1484, 2205
Tsp45I	GTSAC	4 cut(s)	941, 1061, 1142, 2328
TspGWI	ACGGA	2 cut(s)	816, 1786
TspRI	CASTG	4 cut(s)	667, 881, 1216, 2205
VpaK11BI	GGWCC	5 cut(s)	607, 657, 803, 1128, 1535
VspI	ATTAAT	2 cut(s)	1289, 2186
XapI	RAATTY	7 cut(s)	184, 415, 689, 1109, 1170, 2031, 2435
XbaI	TCTAGA	1 cut(s)	1592
XceI	RCATGY	2 cut(s)	2008, 2329
XmiI	GTMKAC	1 cut(s)	2055
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	9 cut(s)	104, 203, 381, 612, 777, 783, 1379, 1593, 1884
ZrmI	AGTACT	1 cut(s)	379
Zsp2I	ATGCAT	3 cut(s)	1474, 1956, 2152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.