RchiOBHm_Chr5g0025351

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
19271828 .. 19272929
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30501

Sequence Viewer

Length: 753 bp
ATGTTGATATATGAGTACATGCCAAACAAAAGTCTGGACTATTTTTTATTTGATTCAATCAGAGGTGTTTTTCTGGATTGGAGCAAGCGTTTCAGCATAATTGAAGGAATCGCTCAAGGATTCCTTTATTTGCACAAATTCTCAAGAACAAGAGTAGTTCATAGAGATCTAAACGCTAGTAACGTACTACTTGATGAAAATATGAACTCCAAAATTTCAGATTTTGGTATGGCAAGGATTTTCTCCATTAATGATCTGGAAGCAAATACTAGTAGGATTGTTGGGACACGTGGTTACATGCCTCCTGAGTACGCAATGGAAGGAATTTTCTCTACAAAATCCAATGTCTACAGTTTTGGAGTGTTAGTGCTTGAAATCATAAGTGGTCGGAGAAACAATAGCTTCTACAATGATGATCGCGCCATCAGTTTAGTAGGATATGCATGGGAGTTGTGGAAAGAAGGCGCAGGGCTACAACTAATGGTTCCAGCACTAGCTGATTCGTGTACTAACAAAGATAAACTGTTAAGATGCGTTCAAGTTGGTCTTCTATGCGTGGAGGATAGTGCAGCGAATCGACCTACCATGTCAGATGTGCTCTCCGGGTTGACAAATGAAAGCTCACCATTACCTGCACCTACAAAACTAGCATTTTCTACCGATAGACATGCGGTCATCAGTAGTATAGTTGAGAAGGAACCACAAATTTTATCTGTAAATGATGTGACCATTTCTGATTGTGATGGACGTTAA

Protein Analysis

250

Amino Acids

27.98

Weight (kDa)

5.3

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 141 4.1e-27 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 132 4.4e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 420
AciI CCGC 1 cut(s) 671
AcsI RAATTY 4 cut(s) 137, 213, 324, 705
AcvI CACGTG 1 cut(s) 290
AfaI GTAC 4 cut(s) 17, 186, 311, 508
AflIII ACRYGT 1 cut(s) 287
AgsI TTSAA 4 cut(s) 57, 104, 374, 539
AhdI GACNNNNNGTC 1 cut(s) 671
AhlI ACTAGT 1 cut(s) 269
AluBI AGCT 3 cut(s) 402, 497, 621
AluI AGCT 3 cut(s) 402, 497, 621
Alw21I GWGCWC 1 cut(s) 600
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 4 cut(s) 137, 213, 324, 705
AseI ATTAAT 1 cut(s) 249
AspLEI GCGC 2 cut(s) 422, 467
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 1 cut(s) 615
BbrPI CACGTG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 1 cut(s) 581
BccI CCATC 2 cut(s) 431, 737
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BcnI CCSGG 1 cut(s) 604
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 4 cut(s) 177, 270, 494, 647
BfmI CTRYAG 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 640
BglII AGATCT 1 cut(s) 166
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 604
BmeRI GACNNNNNGTC 1 cut(s) 671
BmiI GGNNCC 2 cut(s) 486, 699
BmrFI CCNGG 1 cut(s) 604
BmsI GCATC 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 539
BpuEI CTTGAG 2 cut(s) 99, 127
BpuMI CCSGG 1 cut(s) 604
BsaAI YACGTR 1 cut(s) 290
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 351, 381
Bse3DI GCAATG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 581
BsgI GTGCAG 2 cut(s) 588, 618
Bsh1236I CGCG 1 cut(s) 420
BsiHKAI GWGCWC 1 cut(s) 600
BsiSI CCGG 1 cut(s) 603
BslFI GGGAC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 3 cut(s) 166, 253, 415
BspACI CCGC 1 cut(s) 671
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 420
BspLI GGNNCC 2 cut(s) 486, 699
BspMI ACCTGC 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 321
BssMI GATC 3 cut(s) 166, 253, 415
Bst4CI ACNGT 2 cut(s) 353, 525
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 2 cut(s) 422, 467
BstKTI GATC 3 cut(s) 169, 256, 418
BstMBI GATC 3 cut(s) 166, 253, 415
BstNSI RCATGY 3 cut(s) 22, 301, 671
BstSCI CCNGG 1 cut(s) 602
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 581
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 2 cut(s) 422, 467
Csp6I GTAC 4 cut(s) 16, 185, 310, 507
CviAII CATG 5 cut(s) 19, 298, 444, 586, 668
CviJI RGCY 4 cut(s) 402, 472, 497, 621
CviKI_1 RGCY 4 cut(s) 402, 472, 497, 621
CviQI GTAC 4 cut(s) 16, 185, 310, 507
DdeI CTNAG 1 cut(s) 306
DpnI GATC 3 cut(s) 168, 255, 417
DpnII GATC 3 cut(s) 166, 253, 415
DriI GACNNNNNGTC 1 cut(s) 671
Eam1105I GACNNNNNGTC 1 cut(s) 671
Eco72I CACGTG 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 445
FaeI CATG 5 cut(s) 22, 301, 447, 589, 671
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 531, 563
FaqI GGGAC 1 cut(s) 298
FatI CATG 5 cut(s) 18, 297, 443, 585, 667
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 570
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 4 cut(s) 177, 270, 494, 647
GlaI GCGC 2 cut(s) 421, 466
GluI GCNGC 1 cut(s) 570
HapII CCGG 1 cut(s) 603
HhaI GCGC 2 cut(s) 422, 467
Hin1II CATG 5 cut(s) 22, 301, 447, 589, 671
Hin6I GCGC 2 cut(s) 420, 465
HinP1I GCGC 2 cut(s) 420, 465
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 5 cut(s) 53, 108, 120, 500, 574
HpaII CCGG 1 cut(s) 603
HphI GGTGA 1 cut(s) 615
Hpy166II GTNNAC 3 cut(s) 349, 507, 609
Hpy188I TCNGA 5 cut(s) 62, 220, 390, 592, 736
Hpy188III TCNNGA 5 cut(s) 35, 74, 144, 257, 305
Hpy8I GTNNAC 3 cut(s) 349, 507, 609
HpyAV CCTTC 4 cut(s) 98, 314, 455, 688
HpyCH4III ACNGT 2 cut(s) 353, 525
HpyCH4IV ACGT 3 cut(s) 183, 289, 748
HpyCH4V TGCA 4 cut(s) 133, 443, 569, 635
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 3 cut(s) 183, 289, 748
Hsp92II CATG 5 cut(s) 22, 301, 447, 589, 671
HspAI GCGC 2 cut(s) 420, 465
Kzo9I GATC 3 cut(s) 166, 253, 415
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 8 cut(s) 20, 59, 242, 318, 453, 501, 616, 645
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 1 cut(s) 521
MaeI CTAG 4 cut(s) 177, 270, 494, 647
MaeII ACGT 3 cut(s) 183, 289, 748
MaeIII GTNAC 3 cut(s) 179, 293, 724
MalI GATC 3 cut(s) 168, 255, 417
MboI GATC 3 cut(s) 166, 253, 415
MboII GAAGA 1 cut(s) 539
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 5 cut(s) 99, 137, 213, 324, 705
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 3 cut(s) 56, 312, 553
Mph1103I ATGCAT 1 cut(s) 445
MseI TTAA 3 cut(s) 249, 527, 751
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 1 cut(s) 604
MvnI CGCG 1 cut(s) 420
NciI CCSGG 1 cut(s) 604
NdeII GATC 3 cut(s) 166, 253, 415
NlaIII CATG 5 cut(s) 22, 301, 447, 589, 671
NlaIV GGNNCC 2 cut(s) 486, 699
NmuCI GTSAC 1 cut(s) 724
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 3 cut(s) 22, 301, 671
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 5 cut(s) 53, 108, 120, 500, 574
PkrI GCNGC 1 cut(s) 571
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
Ppu21I YACGTR 1 cut(s) 290
PshBI ATTAAT 1 cut(s) 249
PspCI CACGTG 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 486, 699
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 4 cut(s) 17, 186, 311, 508
RsaNI GTAC 4 cut(s) 16, 185, 310, 507
SaqAI TTAA 3 cut(s) 249, 527, 751
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 3 cut(s) 166, 253, 415
ScrFI CCNGG 1 cut(s) 604
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 1 cut(s) 521
SfcI CTRYAG 1 cut(s) 349
SmlI CTYRAG 2 cut(s) 114, 142
SmoI CTYRAG 2 cut(s) 114, 142
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 5 cut(s) 99, 137, 213, 324, 705
SsiI CCGC 1 cut(s) 671
SspMI CTAG 4 cut(s) 177, 270, 494, 647
StyD4I CCNGG 1 cut(s) 602
TaaI ACNGT 2 cut(s) 353, 525
TaiI ACGT 3 cut(s) 186, 292, 751
TaqI TCGA 1 cut(s) 577
TasI AATT 5 cut(s) 99, 137, 213, 324, 705
TatI WGTACW 2 cut(s) 15, 506
TfiI GAWTC 5 cut(s) 53, 108, 120, 500, 574
Tru1I TTAA 3 cut(s) 249, 527, 751
Tru9I TTAA 3 cut(s) 249, 527, 751
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 4 cut(s) 149, 210, 218, 630
VspI ATTAAT 1 cut(s) 249
XapI RAATTY 4 cut(s) 137, 213, 324, 705
XceI RCATGY 3 cut(s) 22, 301, 671
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 4 cut(s) 177, 270, 494, 647
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.