Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003576.1

Orthogroup ID

OG0000096

Physical Location & Seq

Genomic Coordinates Reverse (-)

42795 .. 45794

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003576.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

atgtgtttctatgtaaatgatgaaaattccaactccagctacctagctgcatggcagacgggaagtagaaatcacgcatggattgccaaccgatacacaccagtattatacccttccggagttctaacattggacatgaataaaacattaaaaattatgcacaaaggtggtgatcctgtggtgcttttccgggcttctgaaactaacagtattcacagtactagtagtgttgtggctactctgttggattctggaaattttattgtgcaagaactgaactccgatggaacaatgaggcaggtactgtggcaaagttttgattatcctacagacacccttttgccaggcatgaaagtaggagttaaccacaaaaatggccacatttggtttctttcagcatggtcaggtgaggaacaaccagcaccagggcctttcacccttgattgggaccctagtggacgtgaactgaaaataaagcgacgtgcggtggtttattggaccagtggaatctttagagacgggcaattcgaatttatgaaaccttatgatgaattgggtactctcaggtataagtttagcattgtttcgaatgagaatgaagactacttcacttacactagtgctagtgtcaatcaaagctacggaccacaatgggtgctaaacatctttgggcgactccttgatttaaatggaaatgttattgcgccagcagatcagtgttatggctttaccaccgatggagggtgccagagacgggactatcccagttgcaggcatattggtgacacatttgttgaaacgaatggtttcttcagatcactcacatccaatatgacaacgaagcatgattcaaatgcaagtctcacccttagtgattgtaaggcagcttgttgggaggattgtgactgtcttggattcatgactctcttcgaaaatcagactggatgtgaattttgggtcggaaactggacctttagttcacgtgacctctttggttatgctaatccaagaatttttgtcctatctggattatctcgcaatgggaaatgccagcaaaagattgagaatgaattgctagatttggtgcaatctgataaatcgcttgatgctgagcggcttcctaatgatggaaacatggggcataatgatttaagtgcatctacttatgcatctgtcttggctgctacaagcaacttttctgatgaaaacaaacttggagagggaggatttggacctgtttatagggggaagtcggggacaggaagagacatagctgtgaagagactttctagatgttcagggcaaggaacattagagtttaagaatgaattgatactaatatctgaactccaacatacgaaccttgttcaacttctgggattttgcattcatggggaagagaggatgttgatatatgagtatatgccaaacaaaagcttggacttcttcttattcgatacaaccagacggatgctattagattggaataagcgtttcagtataatagaaggaatagctcaaggattgctttatttgcacaaatactccagggtgagggtaattcatagagatttaaaagctagtaacattctacttgatgaaaacatgattcccagaatatctgactttggtttggcaaggattttcatgcatgatgaaccagaagcaaatactcatagggttgtcggtacacatggttacatgtctcctgagtatgccatggagggaattttctccacaaaatctgatgtctacagttttggtgtgctaatgcttgaaatcataagtggaaggaaaagcagtagtttcaacgataatgatcatgtgttgaatatagtaggatatgcatgggagttgtggaaacaaggtcttgggttacaattaatggatccaacactgtgcagttcatatattgaagatcaattgttgagatgcttccatgttggtctgctttgtgtggaagaaaaggcagttgatcgacccaccatgtctgatgtcatatctctgctaacaaatgaaggcatgtcaccacctgcacctacaaaaccagcattttgtacgggaaaaaaagtcgttggggctggtatagatggaaagggatcagaatcagtaaatgatatatcggattatgaatttgagggacgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

715

Amino Acids

80.32

Weight (kDa)

5.37

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000096)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica	MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica	Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis	pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis	RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata	RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora	Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa	Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha	Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana	Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2041
Acc36I	ACCTGC	2 cut(s)	289, 2041
AccB1I	GGYRCC	1 cut(s)	744
AccBSI	CCGCTC	1 cut(s)	1114
AccI	GTMKAC	1 cut(s)	1752
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	2 cut(s)	485, 1114
AclWI	GGATC	4 cut(s)	167, 1883, 1896, 2107
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	7 cut(s)	25, 256, 530, 950, 1011, 1728, 2132
AcuI	CTGAAG	1 cut(s)	796
AcvI	CACGTG	1 cut(s)	983
AfaI	GTAC	5 cut(s)	220, 303, 559, 1690, 2059
AfiI	CCNNNNNNNGG	8 cut(s)	425, 444, 445, 741, 754, 771, 1127, 1554
AflIII	ACRYGT	1 cut(s)	1701
AgsI	TTSAA	7 cut(s)	797, 852, 1370, 1778, 1810, 1831, 1916
AhlI	ACTAGT	2 cut(s)	221, 617
AjiI	CACGTC	2 cut(s)	461, 482
AjnI	CCWGG	3 cut(s)	343, 424, 1547
AjuI	GAANNNNNNNTTGG	2 cut(s)	1197, 1229
AleI	CACNNNNGTG	1 cut(s)	165
AloI	GAACNNNNNNTCC	2 cut(s)	961, 993
AluBI	AGCT	8 cut(s)	39, 47, 639, 887, 1274, 1437, 1517, 1580
AluI	AGCT	8 cut(s)	39, 47, 639, 887, 1274, 1437, 1517, 1580
Alw26I	GTCTC	6 cut(s)	510, 745, 866, 1260, 1276, 1710
AlwI	GGATC	4 cut(s)	167, 1883, 1896, 2107
AlwNI	CAGNNNCTG	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	116
AoxI	GGCC	2 cut(s)	376, 428
ApeKI	GCWGC	3 cut(s)	47, 884, 1181
ApoI	RAATTY	7 cut(s)	25, 256, 530, 950, 1011, 1728, 2132
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
AseI	ATTAAT	1 cut(s)	1883
Asp700I	GAANNNNTTC	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	6 cut(s)	428, 448, 498, 644, 969, 1232
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	7 cut(s)	182, 419, 427, 794, 856, 1564, 2019
AsuII	TTCGAA	3 cut(s)	528, 587, 930
AvaII	GGWCC	5 cut(s)	448, 498, 644, 969, 1232
BalI	TGGCCA	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	1888
BanI	GGYRCC	1 cut(s)	744
BbrPI	CACGTG	1 cut(s)	983
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	34, 896, 1168
BccI	CCATC	4 cut(s)	278, 731, 1121, 2084
BciT130I	CCWGG	3 cut(s)	345, 426, 1549
BclI	TGATCA	1 cut(s)	1819
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	6 cut(s)	510, 745, 866, 1260, 1276, 1710
BcuI	ACTAGT	2 cut(s)	221, 617
BfaI	CTAG	8 cut(s)	44, 222, 453, 618, 624, 1076, 1290, 1581
BfmI	CTRYAG	2 cut(s)	327, 1753
BfuAI	ACCTGC	2 cut(s)	289, 2041
BisI	GCNGC	4 cut(s)	48, 885, 1115, 1182
BlpI	GCTNAGC	1 cut(s)	1110
BlsI	GCNGC	4 cut(s)	49, 886, 1116, 1183
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	4 cut(s)	191, 345, 426, 1549
Bme18I	GGWCC	5 cut(s)	448, 498, 644, 969, 1232
BmgBI	CACGTC	2 cut(s)	461, 482
BmgT120I	GGNCC	6 cut(s)	428, 448, 498, 644, 969, 1232
BmiI	GGNNCC	4 cut(s)	449, 450, 746, 1890
BmrFI	CCNGG	4 cut(s)	191, 345, 426, 1549
BmrI	ACTGGG	1 cut(s)	759
BmsI	GCATC	5 cut(s)	1096, 1166, 1178, 1461, 1922
BmuI	ACTGGG	1 cut(s)	759
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	2 cut(s)	19, 1531
Bpu1102I	GCTNAGC	1 cut(s)	1110
Bpu14I	TTCGAA	3 cut(s)	528, 587, 930
BpuEI	CTTGAG	1 cut(s)	1503
BpuMI	CCSGG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	983
BsaBI	GATNNNNATC	2 cut(s)	1818, 2104
BsaJI	CCNNGG	3 cut(s)	425, 1548, 1719
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	1529, 1559
Bsc4I	CCNNNNNNNGG	8 cut(s)	425, 444, 445, 741, 754, 771, 1127, 1554
Bse1I	ACTGG	5 cut(s)	101, 501, 765, 946, 971
Bse3DI	GCAATG	1 cut(s)	1045
Bse8I	GATNNNNATC	2 cut(s)	1818, 2104
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	3 cut(s)	345, 426, 1549
BseDI	CCNNGG	3 cut(s)	425, 1548, 1719
BseGI	GGATG	4 cut(s)	824, 950, 1410, 1476
BseJI	GATNNNNATC	2 cut(s)	1818, 2104
BseLI	CCNNNNNNNGG	8 cut(s)	425, 444, 445, 741, 754, 771, 1127, 1554
BseMI	GCAATG	1 cut(s)	1045
BseMII	CTCAG	3 cut(s)	577, 1101, 1701
BseNI	ACTGG	5 cut(s)	101, 501, 765, 946, 971
BseXI	GCAGC	3 cut(s)	34, 896, 1168
BsgI	GTGCAG	2 cut(s)	1921, 2019
BshFI	GGCC	2 cut(s)	378, 430
BshNI	GGYRCC	1 cut(s)	744
BsiSI	CCGG	2 cut(s)	117, 190
BslFI	GGGAC	3 cut(s)	461, 770, 1270
BslI	CCNNNNNNNGG	8 cut(s)	425, 444, 445, 741, 754, 771, 1127, 1554
BsmAI	GTCTC	6 cut(s)	510, 745, 866, 1260, 1276, 1710
BsmBI	CGTCTC	2 cut(s)	510, 745
BsmFI	GGGAC	3 cut(s)	461, 770, 1270
BsmI	GAATGC	1 cut(s)	1386
BsnI	GGCC	2 cut(s)	378, 430
Bsp119I	TTCGAA	3 cut(s)	528, 587, 930
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	8 cut(s)	172, 712, 815, 1819, 1888, 1918, 1975, 2099
Bsp1720I	GCTNAGC	1 cut(s)	1110
Bsp19I	CCATGG	1 cut(s)	1719
BspACI	CCGC	2 cut(s)	485, 1114
BspANI	GGCC	2 cut(s)	378, 430
BspCNI	CTCAG	3 cut(s)	576, 1102, 1702
BspEI	TCCGGA	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	918
BspLI	GGNNCC	4 cut(s)	449, 450, 746, 1890
BspMI	ACCTGC	2 cut(s)	289, 2041
BspPI	GGATC	4 cut(s)	167, 1883, 1896, 2107
BspT104I	TTCGAA	3 cut(s)	528, 587, 930
BspT107I	GGYRCC	1 cut(s)	744
BsrBI	CCGCTC	1 cut(s)	1114
BsrDI	GCAATG	1 cut(s)	1045
BsrI	ACTGG	5 cut(s)	101, 501, 765, 946, 971
BssECI	CCNNGG	3 cut(s)	425, 1548, 1719
BssMI	GATC	8 cut(s)	172, 712, 815, 1819, 1888, 1918, 1975, 2099
BssT1I	CCWWGG	1 cut(s)	1719
Bst2UI	CCWGG	3 cut(s)	345, 426, 1549
Bst4CI	ACNGT	6 cut(s)	209, 218, 306, 908, 1757, 1899
Bst6I	CTCTTC	4 cut(s)	932, 1258, 1274, 1392
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	983
BstBI	TTCGAA	3 cut(s)	528, 587, 930
BstC8I	GCNNGC	3 cut(s)	708, 773, 1052
BstDEI	CTNAG	4 cut(s)	563, 869, 1110, 1710
BstDSI	CCRYGG	1 cut(s)	1719
BstF5I	GGATG	4 cut(s)	824, 950, 1410, 1476
BstHHI	GCGC	1 cut(s)	706
BstKTI	GATC	8 cut(s)	175, 715, 818, 1822, 1891, 1921, 1978, 2102
BstMAI	GTCTC	6 cut(s)	510, 745, 866, 1260, 1276, 1710
BstMBI	GATC	8 cut(s)	172, 712, 815, 1819, 1888, 1918, 1975, 2099
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 1534
BstNI	CCWGG	3 cut(s)	345, 426, 1549
BstNSI	RCATGY	2 cut(s)	1705, 2026
BstSCI	CCNGG	4 cut(s)	189, 343, 424, 1547
BstSFI	CTRYAG	2 cut(s)	327, 1753
BstV1I	GCAGC	3 cut(s)	34, 896, 1168
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	1888
BstXI	CCANNNNNNTGG	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	1888
BsuRI	GGCC	2 cut(s)	378, 430
BtgI	CCRYGG	1 cut(s)	1719
BtrI	CACGTC	2 cut(s)	461, 482
BtsCI	GGATG	4 cut(s)	824, 950, 1410, 1476
BtsIMutI	CAGTG	3 cut(s)	508, 722, 1895
BveI	ACCTGC	2 cut(s)	289, 2041
Cac8I	GCNNGC	3 cut(s)	708, 773, 1052
CaiI	CAGNNNCTG	1 cut(s)	304
CciI	TCATGA	1 cut(s)	918
CfoI	GCGC	1 cut(s)	706
Cfr13I	GGNCC	6 cut(s)	428, 448, 498, 644, 969, 1232
Csp6I	GTAC	5 cut(s)	219, 302, 558, 1689, 2058
CviQI	GTAC	5 cut(s)	219, 302, 558, 1689, 2058
DdeI	CTNAG	4 cut(s)	563, 869, 1110, 1710
DpnI	GATC	8 cut(s)	174, 714, 817, 1821, 1890, 1920, 1977, 2101
DpnII	GATC	8 cut(s)	172, 712, 815, 1819, 1888, 1918, 1975, 2099
DraI	TTTAAA	2 cut(s)	687, 1575
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	4 cut(s)	932, 1258, 1274, 1392
EarI	CTCTTC	4 cut(s)	932, 1258, 1274, 1392
Eco130I	CCWWGG	1 cut(s)	1719
Eco47I	GGWCC	5 cut(s)	448, 498, 644, 969, 1232
Eco57I	CTGAAG	1 cut(s)	796
Eco72I	CACGTG	1 cut(s)	983
EcoO109I	RGGNCCY	2 cut(s)	428, 448
EcoRII	CCWGG	3 cut(s)	343, 424, 1547
EcoT14I	CCWWGG	1 cut(s)	1719
EcoT22I	ATGCAT	3 cut(s)	1171, 1653, 1849
ErhI	CCWWGG	1 cut(s)	1719
Esp3I	CGTCTC	2 cut(s)	510, 745
FalI	AAGNNNNNCTT	2 cut(s)	1512, 1544
FaqI	GGGAC	3 cut(s)	461, 770, 1270
FbaI	TGATCA	1 cut(s)	1819
FblI	GTMKAC	1 cut(s)	1752
Fnu4HI	GCNGC	4 cut(s)	48, 885, 1115, 1182
FokI	GGATG	4 cut(s)	811, 957, 1417, 1483
Fsp4HI	GCNGC	4 cut(s)	48, 885, 1115, 1182
FspBI	CTAG	8 cut(s)	44, 222, 453, 618, 624, 1076, 1290, 1581
GlaI	GCGC	1 cut(s)	705
GluI	GCNGC	4 cut(s)	48, 885, 1115, 1182
GsuI	CTGGAG	2 cut(s)	19, 1531
HaeIII	GGCC	2 cut(s)	378, 430
HapII	CCGG	2 cut(s)	117, 190
HhaI	GCGC	1 cut(s)	706
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	1435
HinfI	GANTC	8 cut(s)	248, 507, 675, 848, 915, 922, 1609, 2105
HpaI	GTTAAC	1 cut(s)	364
HpaII	CCGG	2 cut(s)	117, 190
HphI	GGTGA	7 cut(s)	182, 419, 427, 794, 856, 1564, 2019
Hpy166II	GTNNAC	6 cut(s)	364, 458, 464, 980, 1691, 1753
Hpy188III	TCNNGA	6 cut(s)	117, 252, 919, 1026, 1290, 1709
Hpy8I	GTNNAC	6 cut(s)	364, 458, 464, 980, 1691, 1753
Hpy99I	CGWCG	1 cut(s)	483
HpyAV	CCTTC	4 cut(s)	123, 1502, 1785, 2012
HpyCH4III	ACNGT	6 cut(s)	209, 218, 306, 908, 1757, 1899
HpyCH4IV	ACGT	4 cut(s)	460, 481, 982, 2143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 1534
HpyF3I	CTNAG	4 cut(s)	563, 869, 1110, 1710
HpySE526I	ACGT	4 cut(s)	460, 481, 982, 2143
HspAI	GCGC	1 cut(s)	704
KflI	GGGWCCC	1 cut(s)	448
Kpn2I	TCCGGA	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	1819
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	8 cut(s)	172, 712, 815, 1819, 1888, 1918, 1975, 2099
Lsp1109I	GCAGC	3 cut(s)	34, 896, 1168
LweI	GCATC	5 cut(s)	1096, 1166, 1178, 1461, 1922
MaeI	CTAG	8 cut(s)	44, 222, 453, 618, 624, 1076, 1290, 1581
MaeII	ACGT	4 cut(s)	460, 481, 982, 2143
MaeIII	GTNAC	7 cut(s)	782, 902, 983, 1583, 1697, 1875, 2025
MalI	GATC	8 cut(s)	174, 714, 817, 1821, 1890, 1920, 1977, 2101
MbiI	CCGCTC	1 cut(s)	1114
MboI	GATC	8 cut(s)	172, 712, 815, 1819, 1888, 1918, 1975, 2099
MboII	GAAGA	9 cut(s)	611, 802, 919, 1275, 1291, 1409, 1438, 1928, 1973
MfeI	CAATTG	1 cut(s)	1922
MflI	RGATCY	1 cut(s)	1888
MlsI	TGGCCA	1 cut(s)	378
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	669, 916
MmeI	TCCRAC	5 cut(s)	54, 225, 940, 1375, 1916
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	3 cut(s)	1171, 1653, 1849
MroI	TCCGGA	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	806
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	8 cut(s)	149, 363, 686, 1151, 1320, 1574, 1883, 2146
MslI	CAYNNNNRTG	4 cut(s)	165, 372, 780, 1274
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	2 cut(s)	117, 190
MspR9I	CCNGG	4 cut(s)	191, 345, 426, 1549
MunI	CAATTG	1 cut(s)	1922
Mva1269I	GAATGC	1 cut(s)	1386
MvaI	CCWGG	3 cut(s)	345, 426, 1549
MwoI	GCNNNNNNNGC	2 cut(s)	83, 1534
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	1719
NdeII	GATC	8 cut(s)	172, 712, 815, 1819, 1888, 1918, 1975, 2099
NlaIV	GGNNCC	4 cut(s)	449, 450, 746, 1890
NmuCI	GTSAC	4 cut(s)	782, 902, 983, 2025
NsiI	ATGCAT	3 cut(s)	1171, 1653, 1849
NspI	RCATGY	2 cut(s)	1705, 2026
NspV	TTCGAA	3 cut(s)	528, 587, 930
OliI	CACNNNNGTG	1 cut(s)	165
PagI	TCATGA	1 cut(s)	918
PaqCI	CACCTGC	1 cut(s)	2041
PciI	ACATGT	1 cut(s)	1701
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PctI	GAATGC	1 cut(s)	1386
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	6 cut(s)	248, 507, 848, 915, 1609, 2105
PkrI	GCNGC	4 cut(s)	49, 886, 1116, 1183
PleI	GAGTC	2 cut(s)	669, 916
PmaCI	CACGTG	1 cut(s)	983
PmlI	CACGTG	1 cut(s)	983
PpsI	GAGTC	2 cut(s)	669, 916
Ppu21I	YACGTR	1 cut(s)	983
PpuMI	RGGWCCY	1 cut(s)	448
PscI	ACATGT	1 cut(s)	1701
PshBI	ATTAAT	1 cut(s)	1883
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	3 cut(s)	343, 424, 1547
PspCI	CACGTG	1 cut(s)	983
PspGI	CCWGG	3 cut(s)	343, 424, 1547
PspN4I	GGNNCC	4 cut(s)	449, 450, 746, 1890
PspPI	GGNCC	6 cut(s)	428, 448, 498, 644, 969, 1232
PspPPI	RGGWCCY	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	1888
RsaI	GTAC	5 cut(s)	220, 303, 559, 1690, 2059
RsaNI	GTAC	5 cut(s)	219, 302, 558, 1689, 2058
RseI	CAYNNNNRTG	4 cut(s)	165, 372, 780, 1274
SaqAI	TTAA	8 cut(s)	149, 363, 686, 1151, 1320, 1574, 1883, 2146
SatI	GCNGC	4 cut(s)	48, 885, 1115, 1182
Sau3AI	GATC	8 cut(s)	172, 712, 815, 1819, 1888, 1918, 1975, 2099
Sau96I	GGNCC	6 cut(s)	428, 448, 498, 644, 969, 1232
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	2 cut(s)	669, 916
ScrFI	CCNGG	4 cut(s)	191, 345, 426, 1549
SfaNI	GCATC	5 cut(s)	1096, 1166, 1178, 1461, 1922
SfcI	CTRYAG	2 cut(s)	327, 1753
SfuI	TTCGAA	3 cut(s)	528, 587, 930
SinI	GGWCC	5 cut(s)	448, 498, 644, 969, 1232
SmiI	ATTTAAAT	1 cut(s)	687
SmiMI	CAYNNNNRTG	4 cut(s)	165, 372, 780, 1274
SmlI	CTYRAG	1 cut(s)	1518
SmoI	CTYRAG	1 cut(s)	1518
SpeI	ACTAGT	2 cut(s)	221, 617
SsiI	CCGC	2 cut(s)	485, 1114
SspMI	CTAG	8 cut(s)	44, 222, 453, 618, 624, 1076, 1290, 1581
StyD4I	CCNGG	4 cut(s)	189, 343, 424, 1547
StyI	CCWWGG	1 cut(s)	1719
SwaI	ATTTAAAT	1 cut(s)	687
TaaI	ACNGT	6 cut(s)	209, 218, 306, 908, 1757, 1899
TaiI	ACGT	4 cut(s)	463, 484, 985, 2146
TaqI	TCGA	5 cut(s)	528, 587, 930, 1455, 1978
TatI	WGTACW	1 cut(s)	218
TauI	GCSGC	1 cut(s)	1117
TfiI	GAWTC	6 cut(s)	248, 507, 848, 915, 1609, 2105
Tru1I	TTAA	8 cut(s)	149, 363, 686, 1151, 1320, 1574, 1883, 2146
Tru9I	TTAA	8 cut(s)	149, 363, 686, 1151, 1320, 1574, 1883, 2146
TscAI	CASTG	3 cut(s)	508, 722, 1902
TseFI	GTSAC	4 cut(s)	782, 902, 983, 2025
TseI	GCWGC	3 cut(s)	47, 884, 1181
Tsp45I	GTSAC	4 cut(s)	782, 902, 983, 2025
TspGWI	ACGGA	2 cut(s)	657, 1483
TspRI	CASTG	3 cut(s)	508, 722, 1902
VpaK11BI	GGWCC	5 cut(s)	448, 498, 644, 969, 1232
VspI	ATTAAT	1 cut(s)	1883
XapI	RAATTY	7 cut(s)	25, 256, 530, 950, 1011, 1728, 2132
XbaI	TCTAGA	1 cut(s)	1289
XceI	RCATGY	2 cut(s)	1705, 2026
XmiI	GTMKAC	1 cut(s)	1752
XmnI	GAANNNNTTC	1 cut(s)	806
XspI	CTAG	8 cut(s)	44, 222, 453, 618, 624, 1076, 1290, 1581
ZrmI	AGTACT	1 cut(s)	220
Zsp2I	ATGCAT	3 cut(s)	1171, 1653, 1849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.